data_A1KOX # _chem_comp.id A1KOX _chem_comp.name "3-[[(2S,6R)-6-(6-aminopurin-9-yl)morpholin-2-yl]methylsulfanyl]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H18 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-04 _chem_comp.pdbx_modified_date 2026-09-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.428 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KOX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 33YO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KOX N N1 N 0 1 N N N N N N 79.079 -10.186 4.576 -6.240 3.154 -1.092 N A1KOX 1 A1KOX C C1 C 0 1 Y N N N N N 79.976 -10.580 3.665 -5.828 2.096 -0.301 C A1KOX 2 A1KOX O O1 O 0 1 N N N N N N 83.968 -14.902 3.265 -0.921 -1.088 -0.044 O A1KOX 3 A1KOX C1 C2 C 0 1 Y N N N N N 80.885 -10.492 1.524 -6.169 0.693 1.500 C1 A1KOX 4 A1KOX C10 C3 C 0 1 Y N N N N N 87.209 -17.245 4.939 3.636 -0.292 0.101 C10 A1KOX 5 A1KOX C11 C4 C 0 1 Y N N N N N 88.045 -17.719 3.928 4.463 0.749 0.493 C11 A1KOX 6 A1KOX C12 C5 C 0 1 Y N N N N N 89.422 -17.758 4.124 5.759 0.834 -0.016 C12 A1KOX 7 A1KOX C13 C6 C 0 1 N N N N N N 90.342 -18.276 3.060 6.647 1.941 0.397 C13 A1KOX 8 A1KOX C14 C7 C 0 1 Y N N N N N 89.959 -17.321 5.324 6.214 -0.130 -0.918 C14 A1KOX 9 A1KOX C15 C8 C 0 1 Y N N N N N 89.128 -16.843 6.326 5.383 -1.163 -1.302 C15 A1KOX 10 A1KOX C16 C9 C 0 1 Y N N N N N 87.755 -16.800 6.133 4.099 -1.248 -0.797 C16 A1KOX 11 A1KOX C2 C10 C 0 1 Y N N N N N 81.925 -11.982 2.985 -4.262 0.351 0.264 C2 A1KOX 12 A1KOX C3 C11 C 0 1 Y N N N N N 80.976 -11.594 4.022 -4.628 1.417 -0.576 C3 A1KOX 13 A1KOX C4 C12 C 0 1 Y N N N N N 82.335 -13.085 4.809 -2.744 0.635 -1.311 C4 A1KOX 14 A1KOX C5 C13 C 0 1 N N R N N N 83.831 -13.551 2.865 -2.296 -1.243 0.315 C5 A1KOX 15 A1KOX C6 C14 C 0 1 N N N N N N 85.053 -12.769 3.312 -2.824 -2.559 -0.262 C6 A1KOX 16 A1KOX C7 C15 C 0 1 N N N N N N 86.340 -14.741 3.048 -0.587 -3.477 -0.160 C7 A1KOX 17 A1KOX C8 C16 C 0 1 N N S N N N 85.087 -15.490 2.620 -0.083 -2.152 0.416 C8 A1KOX 18 A1KOX C9 C17 C 0 1 N N N N N N 85.197 -16.963 3.003 1.354 -1.907 -0.049 C9 A1KOX 19 A1KOX N1 N2 N 0 1 Y N N N N N 79.980 -10.082 2.419 -6.555 1.701 0.739 N1 A1KOX 20 A1KOX N2 N3 N 0 1 Y N N N N N 81.830 -11.408 1.771 -5.056 0.026 1.278 N2 A1KOX 21 A1KOX N3 N4 N 0 1 Y N N N N N 81.279 -12.301 5.116 -3.659 1.537 -1.515 N3 A1KOX 22 A1KOX N4 N5 N 0 1 Y N N N N N 82.706 -12.896 3.538 -3.072 -0.124 -0.227 N4 A1KOX 23 A1KOX N5 N6 N 0 1 N N N N N N 86.249 -13.328 2.684 -1.993 -3.670 0.226 N5 A1KOX 24 A1KOX O1 O2 O 0 1 N N N N N N 91.636 -17.982 3.089 7.898 2.020 -0.097 O1 A1KOX 25 A1KOX O2 O3 O 0 1 N N N N N N 89.923 -18.980 2.160 6.249 2.778 1.181 O2 A1KOX 26 A1KOX S S1 S 0 1 N N N N N N 85.530 -17.168 4.717 2.000 -0.410 0.747 S A1KOX 27 A1KOX H2 H1 H 0 1 N N N N N N 78.469 -9.505 4.171 -5.699 3.435 -1.847 H2 A1KOX 28 A1KOX H3 H3 H 0 1 N N N N N N 78.544 -10.974 4.880 -7.072 3.612 -0.895 H3 A1KOX 29 A1KOX H4 H5 H 0 1 N N N N N N 80.852 -10.056 0.537 -6.790 0.405 2.335 H4 A1KOX 30 A1KOX H13 H6 H 0 1 N N N N N N 87.623 -18.056 2.993 4.105 1.492 1.191 H13 A1KOX 31 A1KOX H15 H7 H 0 1 N N N N N N 91.027 -17.353 5.479 7.217 -0.068 -1.314 H15 A1KOX 32 A1KOX H16 H8 H 0 1 N N N N N N 89.551 -16.503 7.260 5.737 -1.907 -2.000 H16 A1KOX 33 A1KOX H17 H9 H 0 1 N N N N N N 87.112 -16.420 6.913 3.454 -2.058 -1.102 H17 A1KOX 34 A1KOX H20 H10 H 0 1 N N N N N N 82.813 -13.769 5.494 -1.858 0.503 -1.914 H20 A1KOX 35 A1KOX H H11 H 0 1 N N N N N N 83.722 -13.471 1.773 -2.390 -1.258 1.401 H A1KOX 36 A1KOX H6 H12 H 0 1 N N N N N N 85.149 -12.834 4.406 -3.855 -2.709 0.057 H6 A1KOX 37 A1KOX H7 H13 H 0 1 N N N N N N 84.942 -11.715 3.016 -2.781 -2.522 -1.351 H7 A1KOX 38 A1KOX H10 H14 H 0 1 N N N N N N 86.456 -14.826 4.139 -0.508 -3.455 -1.247 H10 A1KOX 39 A1KOX H9 H15 H 0 1 N N N N N N 87.214 -15.186 2.550 0.013 -4.298 0.232 H9 A1KOX 40 A1KOX H1 H16 H 0 1 N N N N N N 84.982 -15.414 1.528 -0.111 -2.193 1.505 H1 A1KOX 41 A1KOX H11 H17 H 0 1 N N N N N N 86.012 -17.422 2.424 1.975 -2.760 0.225 H11 A1KOX 42 A1KOX H12 H18 H 0 1 N N N N N N 84.249 -17.466 2.762 1.370 -1.779 -1.131 H12 A1KOX 43 A1KOX H8 H21 H 0 1 N N N N N N 87.060 -12.842 3.009 -2.341 -4.556 -0.108 H8 A1KOX 44 A1KOX H14 H22 H 0 1 N N N N N N 92.071 -18.394 2.352 8.441 2.762 0.203 H14 A1KOX 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KOX C13 O2 DOUB N N 1 A1KOX O1 C13 SING N N 2 A1KOX C12 C13 SING N N 3 A1KOX C12 C11 SING Y N 4 A1KOX C14 C12 DOUB Y N 5 A1KOX C11 C10 DOUB Y N 6 A1KOX C15 C14 SING Y N 7 A1KOX C16 C15 DOUB Y N 8 A1KOX C10 C16 SING Y N 9 A1KOX S C10 SING N N 10 A1KOX C9 S SING N N 11 A1KOX C8 C9 SING N N 12 A1KOX C8 C7 SING N N 13 A1KOX O C8 SING N N 14 A1KOX C7 N5 SING N N 15 A1KOX N5 C6 SING N N 16 A1KOX C6 C5 SING N N 17 A1KOX C5 O SING N N 18 A1KOX N4 C5 SING N N 19 A1KOX N4 C2 SING Y N 20 A1KOX C4 N4 SING Y N 21 A1KOX C2 N2 DOUB Y N 22 A1KOX C2 C3 SING Y N 23 A1KOX N2 C1 SING Y N 24 A1KOX C1 N1 DOUB Y N 25 A1KOX N1 C SING Y N 26 A1KOX N3 C4 DOUB Y N 27 A1KOX C3 N3 SING Y N 28 A1KOX C C3 DOUB Y N 29 A1KOX N C SING N N 30 A1KOX N H2 SING N N 31 A1KOX N H3 SING N N 32 A1KOX C1 H4 SING N N 33 A1KOX C11 H13 SING N N 34 A1KOX C14 H15 SING N N 35 A1KOX C15 H16 SING N N 36 A1KOX C16 H17 SING N N 37 A1KOX C4 H20 SING N N 38 A1KOX C5 H SING N N 39 A1KOX C6 H6 SING N N 40 A1KOX C6 H7 SING N N 41 A1KOX C7 H10 SING N N 42 A1KOX C7 H9 SING N N 43 A1KOX C8 H1 SING N N 44 A1KOX C9 H11 SING N N 45 A1KOX C9 H12 SING N N 46 A1KOX N5 H8 SING N N 47 A1KOX O1 H14 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KOX InChI InChI 1.06 "InChI=1S/C17H18N6O3S/c18-15-14-16(21-8-20-15)23(9-22-14)13-6-19-5-11(26-13)7-27-12-3-1-2-10(4-12)17(24)25/h1-4,8-9,11,13,19H,5-7H2,(H,24,25)(H2,18,20,21)/t11-,13+/m0/s1" A1KOX InChIKey InChI 1.06 FDIVTNPWGYZEAL-WCQYABFASA-N A1KOX SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@H]3CNC[C@@H](CSc4cccc(c4)C(O)=O)O3" A1KOX SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3CNC[CH](CSc4cccc(c4)C(O)=O)O3" A1KOX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)SC[C@@H]2CNC[C@@H](O2)n3cnc4c3ncnc4N)C(=O)O" A1KOX SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)SCC2CNCC(O2)n3cnc4c3ncnc4N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1KOX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(2~{S},6~{R})-6-(6-aminopurin-9-yl)morpholin-2-yl]methylsulfanyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KOX "Create component" 2026-09-04 PDBE A1KOX "Modify aromatic_flag" 2026-09-04 PDBE A1KOX "Initial release" 2026-09-16 RCSB #