data_A1KTY # _chem_comp.id A1KTY _chem_comp.name "(1~{S},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-oxabicyclo[4.1.0]heptane-2,3,4-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-09-29 _chem_comp.pdbx_modified_date 2026-10-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.167 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KTY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 34SN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KTY C4 C1 C 0 1 N N S N N N 1.029 -15.152 -19.160 -0.974 0.949 -0.196 C4 A1KTY 1 A1KTY C5 C2 C 0 1 N N R N N N 0.632 -16.622 -19.157 -1.845 -0.215 0.227 C5 A1KTY 2 A1KTY C6 C3 C 0 1 N N R N N N -0.875 -16.827 -19.339 -1.239 -1.557 -0.156 C6 A1KTY 3 A1KTY C7 C4 C 0 1 N N R N N N -1.760 -15.692 -19.795 0.246 -1.679 -0.459 C7 A1KTY 4 A1KTY C3 C5 C 0 1 N N R N N N 0.383 -14.337 -20.298 0.483 0.753 0.158 C3 A1KTY 5 A1KTY O1 O1 O 0 1 N N N N N N -1.844 -14.209 -22.391 3.351 0.339 -0.035 O1 A1KTY 6 A1KTY C1 C6 C 0 1 N N N N N N -1.902 -13.512 -21.102 2.445 -0.746 0.176 C1 A1KTY 7 A1KTY C2 C7 C 0 1 N N R N N N -1.138 -14.297 -20.018 1.113 -0.439 -0.512 C2 A1KTY 8 A1KTY O2 O2 O 0 1 N N N N N N 0.874 -13.013 -20.179 1.230 1.922 -0.185 O2 A1KTY 9 A1KTY O3 O3 O 0 1 N N N N N N 2.494 -15.120 -19.312 -1.446 2.135 0.447 O3 A1KTY 10 A1KTY O4 O4 O 0 1 N N N N N N 0.966 -17.211 -17.861 -3.123 -0.089 -0.399 O4 A1KTY 11 A1KTY O5 O5 O 0 1 N N N N N N -1.224 -16.727 -20.786 -0.293 -2.111 0.773 O5 A1KTY 12 A1KTY H1 H1 H 0 1 N N N N N N 0.746 -14.702 -18.197 -1.059 1.078 -1.275 H1 A1KTY 13 A1KTY H2 H2 H 0 1 N N N N N N 1.169 -17.146 -19.962 -1.977 -0.184 1.308 H2 A1KTY 14 A1KTY H3 H3 H 0 1 N N N N N N -1.344 -17.631 -18.753 -1.913 -2.250 -0.659 H3 A1KTY 15 A1KTY H4 H4 H 0 1 N N N N N N -2.829 -15.735 -19.540 0.528 -2.463 -1.162 H4 A1KTY 16 A1KTY H5 H5 H 0 1 N N N N N N 0.593 -14.789 -21.279 0.527 0.613 1.238 H5 A1KTY 17 A1KTY H6 H6 H 0 1 N N N N N N -2.320 -13.709 -23.044 4.218 0.213 0.375 H6 A1KTY 18 A1KTY H7 H7 H 0 1 N N N N N N -1.450 -12.515 -21.211 2.868 -1.659 -0.241 H7 A1KTY 19 A1KTY H8 H8 H 0 1 N N N N N N -2.953 -13.406 -20.797 2.280 -0.878 1.246 H8 A1KTY 20 A1KTY H9 H9 H 0 1 N N N N N N -1.268 -13.742 -19.077 1.306 -0.195 -1.556 H9 A1KTY 21 A1KTY H10 H10 H 0 1 N N N N N N 1.809 -13.005 -20.346 0.888 2.736 0.208 H10 A1KTY 22 A1KTY H11 H11 H 0 1 N N N N N N 2.896 -15.621 -18.612 -2.361 2.362 0.231 H11 A1KTY 23 A1KTY H12 H12 H 0 1 N N N N N N 1.896 -17.110 -17.697 -3.595 0.724 -0.171 H12 A1KTY 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KTY O1 C1 SING N N 1 A1KTY C1 C2 SING N N 2 A1KTY O5 C7 SING N N 3 A1KTY O5 C6 SING N N 4 A1KTY C3 O2 SING N N 5 A1KTY C3 C2 SING N N 6 A1KTY C3 C4 SING N N 7 A1KTY C2 C7 SING N N 8 A1KTY C7 C6 SING N N 9 A1KTY C6 C5 SING N N 10 A1KTY O3 C4 SING N N 11 A1KTY C4 C5 SING N N 12 A1KTY C5 O4 SING N N 13 A1KTY C4 H1 SING N N 14 A1KTY C5 H2 SING N N 15 A1KTY C6 H3 SING N N 16 A1KTY C7 H4 SING N N 17 A1KTY C3 H5 SING N N 18 A1KTY O1 H6 SING N N 19 A1KTY C1 H7 SING N N 20 A1KTY C1 H8 SING N N 21 A1KTY C2 H9 SING N N 22 A1KTY O2 H10 SING N N 23 A1KTY O3 H11 SING N N 24 A1KTY O4 H12 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KTY InChI InChI 1.06 "InChI=1S/C7H12O5/c8-1-2-3(9)4(10)5(11)7-6(2)12-7/h2-11H,1H2/t2-,3-,4+,5-,6-,7+/m1/s1" A1KTY InChIKey InChI 1.06 YQLWKYQDOQEWRD-GEGSFZHJSA-N A1KTY SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H]2O[C@H]12" A1KTY SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]2O[CH]12" A1KTY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H]2[C@@H]1O2)O)O)O)O" A1KTY SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C2C1O2)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1KTY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-oxabicyclo[4.1.0]heptane-2,3,4-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KTY "Create component" 2026-09-29 PDBE A1KTY "Initial release" 2026-10-28 RCSB #