data_A1KVX # _chem_comp.id A1KVX _chem_comp.name "[(2~{S},6~{R})-6-(6-aminopurin-9-yl)-4-(2-oxidanylideneethyl)morpholin-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N6 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-11-02 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.274 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KVX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 35FR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KVX N1 N1 N 0 1 Y N N N N N 9.409 5.111 -2.000 -5.196 1.934 0.926 N1 A1KVX 1 A1KVX C2 C1 C 0 1 Y N N N N N 9.988 5.334 -0.809 -4.681 0.949 1.639 C2 A1KVX 2 A1KVX N3 N2 N 0 1 Y N N N N N 9.239 5.589 0.266 -3.509 0.417 1.366 N3 A1KVX 3 A1KVX C4 C2 C 0 1 Y N N N N N 7.863 5.623 0.171 -2.785 0.860 0.343 C4 A1KVX 4 A1KVX C5 C3 C 0 1 Y N N N N N 7.252 5.409 -1.057 -3.289 1.908 -0.446 C5 A1KVX 5 A1KVX C6 C4 C 0 1 Y N N N N N 8.093 5.162 -2.144 -4.545 2.443 -0.115 C6 A1KVX 6 A1KVX N6 N3 N 0 1 N N N N N N 7.505 4.925 -3.448 -5.092 3.476 -0.856 N6 A1KVX 7 A1KVX N7 N4 N 0 1 Y N N N N N 5.915 5.504 -0.881 -2.367 2.164 -1.405 N7 A1KVX 8 A1KVX C8 C5 C 0 1 Y N N N N N 5.687 5.768 0.410 -1.354 1.359 -1.259 C8 A1KVX 9 A1KVX N9 N5 N 0 1 Y N N N N N 6.847 5.833 1.047 -1.565 0.535 -0.193 N9 A1KVX 10 A1KVX "C1'" C6 C 0 1 N N R N N N 7.068 6.141 2.483 -0.654 -0.505 0.291 "C1'" A1KVX 11 A1KVX "C2'" C7 C 0 1 N N N N N N 6.675 7.551 2.767 -1.053 -1.855 -0.313 "C2'" A1KVX 12 A1KVX "N3'" N6 N 0 1 N N N N N N 6.923 7.829 4.119 -0.091 -2.881 0.114 "N3'" A1KVX 13 A1KVX "C4'" C8 C 0 1 N N N N N N 6.286 6.901 5.005 1.272 -2.523 -0.306 "C4'" A1KVX 14 A1KVX "C5'" C9 C 0 1 N N S N N N 6.648 5.428 4.729 1.648 -1.168 0.299 "C5'" A1KVX 15 A1KVX "O6'" O1 O 0 1 N N N N N N 6.408 5.170 3.306 0.684 -0.190 -0.102 "O6'" A1KVX 16 A1KVX "C6'" C10 C 0 1 N N N N N N 5.706 4.626 5.494 3.034 -0.753 -0.199 "C6'" A1KVX 17 A1KVX "O7'" O2 O 0 1 N N N N N N 6.052 4.740 6.848 3.433 0.454 0.454 "O7'" A1KVX 18 A1KVX P P1 P 0 1 N N N N N N 4.875 4.550 7.920 4.842 1.180 0.172 P A1KVX 19 A1KVX O1P O3 O 0 1 N N N N N N 3.889 3.376 7.710 5.945 0.218 0.393 O1P A1KVX 20 A1KVX O2P O4 O 0 1 N N N N N N 5.554 4.605 9.250 4.881 1.700 -1.351 O2P A1KVX 21 A1KVX O3P O5 O 0 1 N N N N N N 3.890 5.664 7.587 5.011 2.431 1.171 O3P A1KVX 22 A1KVX C10 C11 C 0 1 N N N N N N 6.576 9.192 4.504 -0.470 -4.204 -0.399 C10 A1KVX 23 A1KVX C11 C12 C 0 1 N N N N N N 7.341 9.568 5.789 -1.764 -4.638 0.239 C11 A1KVX 24 A1KVX O11 O6 O 0 1 N N N N N N 7.345 10.703 6.155 -2.702 -4.952 -0.453 O11 A1KVX 25 A1KVX H21 H1 H 0 1 N N N N N N 11.064 5.307 -0.721 -5.244 0.565 2.477 H21 A1KVX 26 A1KVX H61 H2 H 0 1 N N N N N N 8.229 4.741 -4.112 -5.960 3.836 -0.618 H61 A1KVX 27 A1KVX H62 H3 H 0 1 N N N N N N 6.891 4.138 -3.398 -4.608 3.839 -1.614 H62 A1KVX 28 A1KVX H81 H4 H 0 1 N N N N N N 4.715 5.906 0.860 -0.477 1.346 -1.889 H81 A1KVX 29 A1KVX "H1'1" H5 H 0 0 N N N N N N 8.149 6.062 2.670 -0.711 -0.562 1.378 "H1'1" A1KVX 30 A1KVX "H2'1" H6 H 0 0 N N N N N N 7.264 8.233 2.136 -2.051 -2.126 0.030 "H2'1" A1KVX 31 A1KVX "H2'2" H7 H 0 0 N N N N N N 5.605 7.686 2.553 -1.048 -1.782 -1.401 "H2'2" A1KVX 32 A1KVX "H4'1" H9 H 0 0 N N N N N N 6.585 7.144 6.035 1.972 -3.283 0.043 "H4'1" A1KVX 33 A1KVX "H4'2" H10 H 0 0 N N N N N N 5.197 7.015 4.902 1.314 -2.461 -1.393 "H4'2" A1KVX 34 A1KVX "H5'1" H11 H 0 0 N N N N N N 7.691 5.223 5.013 1.658 -1.244 1.386 "H5'1" A1KVX 35 A1KVX "H6'1" H12 H 0 0 N N N N N N 4.683 4.997 5.336 3.751 -1.542 0.026 "H6'1" A1KVX 36 A1KVX "H6'2" H13 H 0 0 N N N N N N 5.767 3.574 5.179 2.999 -0.589 -1.276 "H6'2" A1KVX 37 A1KVX H2 H14 H 0 1 N N N N N N 5.262 3.877 9.786 4.185 2.335 -1.568 H2 A1KVX 38 A1KVX H3 H15 H 0 1 N N N N N N 3.045 5.287 7.373 5.840 2.916 1.056 H3 A1KVX 39 A1KVX H101 H16 H 0 0 N N N N N N 6.853 9.884 3.695 -0.597 -4.152 -1.480 H101 A1KVX 40 A1KVX H102 H17 H 0 0 N N N N N N 5.494 9.258 4.688 0.313 -4.924 -0.160 H102 A1KVX 41 A1KVX H111 H18 H 0 0 N N N N N N 7.868 8.811 6.352 -1.852 -4.668 1.315 H111 A1KVX 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KVX N1 C2 DOUB Y N 1 A1KVX N1 C6 SING Y N 2 A1KVX C2 N3 SING Y N 3 A1KVX N3 C4 DOUB Y N 4 A1KVX C4 C5 SING Y N 5 A1KVX C4 N9 SING Y N 6 A1KVX C5 C6 DOUB Y N 7 A1KVX C5 N7 SING Y N 8 A1KVX C6 N6 SING N N 9 A1KVX N7 C8 DOUB Y N 10 A1KVX C8 N9 SING Y N 11 A1KVX N9 "C1'" SING N N 12 A1KVX "C1'" "C2'" SING N N 13 A1KVX "C1'" "O6'" SING N N 14 A1KVX "C2'" "N3'" SING N N 15 A1KVX "N3'" "C4'" SING N N 16 A1KVX "N3'" C10 SING N N 17 A1KVX "C4'" "C5'" SING N N 18 A1KVX "C5'" "O6'" SING N N 19 A1KVX "C5'" "C6'" SING N N 20 A1KVX "C6'" "O7'" SING N N 21 A1KVX "O7'" P SING N N 22 A1KVX P O1P DOUB N N 23 A1KVX P O2P SING N N 24 A1KVX C10 C11 SING N N 25 A1KVX C11 O11 DOUB N N 26 A1KVX O3P P SING N N 27 A1KVX C2 H21 SING N N 28 A1KVX N6 H61 SING N N 29 A1KVX N6 H62 SING N N 30 A1KVX C8 H81 SING N N 31 A1KVX "C1'" "H1'1" SING N N 32 A1KVX "C2'" "H2'1" SING N N 33 A1KVX "C2'" "H2'2" SING N N 34 A1KVX "C4'" "H4'1" SING N N 35 A1KVX "C4'" "H4'2" SING N N 36 A1KVX "C5'" "H5'1" SING N N 37 A1KVX "C6'" "H6'1" SING N N 38 A1KVX "C6'" "H6'2" SING N N 39 A1KVX O2P H2 SING N N 40 A1KVX O3P H3 SING N N 41 A1KVX C10 H101 SING N N 42 A1KVX C10 H102 SING N N 43 A1KVX C11 H111 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KVX InChI InChI 1.06 "InChI=1S/C12H17N6O6P/c13-11-10-12(15-6-14-11)18(7-16-10)9-4-17(1-2-19)3-8(24-9)5-23-25(20,21)22/h2,6-9H,1,3-5H2,(H2,13,14,15)(H2,20,21,22)/t8-,9+/m0/s1" A1KVX InChIKey InChI 1.06 GAPSVHZDOPQFFN-DTWKUNHWSA-N A1KVX SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@H]3CN(CC=O)C[C@@H](CO[P](O)(O)=O)O3" A1KVX SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3CN(CC=O)C[CH](CO[P](O)(O)=O)O3" A1KVX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3CN(C[C@H](O3)COP(=O)(O)O)CC=O)N" A1KVX SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3CN(CC(O3)COP(=O)(O)O)CC=O)N" # _pdbx_chem_comp_identifier.comp_id A1KVX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},6~{R})-6-(6-aminopurin-9-yl)-4-(2-oxidanylideneethyl)morpholin-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KVX "Create component" 2026-11-02 PDBE A1KVX "Initial release" 2026-11-11 RCSB #