data_A1KVY # _chem_comp.id A1KVY _chem_comp.name "[(2~{S},6~{R})-6-(6-aminopurin-9-yl)-4-(2-fluoranylethyl)morpholin-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 F N6 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2026-11-02 _chem_comp.pdbx_modified_date 2026-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 376.281 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1KVY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 35FS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1KVY C2 C1 C 0 1 Y N N N N N 9.807 5.426 -0.795 4.681 -1.081 1.629 C2 A1KVY 1 A1KVY C4 C2 C 0 1 Y N N N N N 7.798 5.669 0.226 2.783 -0.992 0.337 C4 A1KVY 2 A1KVY C5 C3 C 0 1 Y N N N N N 7.099 5.451 -1.025 3.281 -2.045 -0.449 C5 A1KVY 3 A1KVY C6 C4 C 0 1 Y N N N N N 7.859 5.220 -2.165 4.532 -2.590 -0.111 C6 A1KVY 4 A1KVY C8 C5 C 0 1 Y N N N N N 5.509 5.758 0.445 1.355 -1.482 -1.271 C8 A1KVY 5 A1KVY N1 N1 N 0 1 Y N N N N N 9.231 5.197 -2.049 5.188 -2.075 0.923 N1 A1KVY 6 A1KVY N3 N2 N 0 1 Y N N N N N 9.182 5.696 0.374 3.510 -0.546 1.356 N3 A1KVY 7 A1KVY N6 N3 N 0 1 N N N N N N 7.197 4.996 -3.357 5.074 -3.629 -0.847 N6 A1KVY 8 A1KVY N7 N4 N 0 1 Y N N N N N 5.706 5.543 -0.871 2.362 -2.295 -1.412 N7 A1KVY 9 A1KVY N9 N5 N 0 1 Y N N N N N 6.748 5.875 1.157 1.567 -0.658 -0.206 N9 A1KVY 10 A1KVY "C1'" C6 C 0 1 N N R N N N 6.955 6.153 2.543 0.664 0.391 0.272 "C1'" A1KVY 11 A1KVY "C2'" C7 C 0 1 N N N N N N 6.594 7.634 2.882 1.076 1.735 -0.333 "C2'" A1KVY 12 A1KVY "N3'" N6 N 0 1 N N N N N N 6.866 7.841 4.337 0.120 2.770 0.089 "N3'" A1KVY 13 A1KVY "C4'" C8 C 0 1 N N N N N N 6.160 6.867 5.193 -1.244 2.423 -0.336 "C4'" A1KVY 14 A1KVY "C5'" C9 C 0 1 N N S N N N 6.491 5.431 4.777 -1.633 1.071 0.269 "C5'" A1KVY 15 A1KVY "O6'" O1 O 0 1 N N N N N N 6.307 5.259 3.367 -0.676 0.085 -0.126 "O6'" A1KVY 16 A1KVY "C6'" C10 C 0 1 N N N N N N 5.730 4.419 5.653 -3.020 0.667 -0.234 "C6'" A1KVY 17 A1KVY "O7'" O2 O 0 1 N N N N N N 6.104 4.641 6.935 -3.432 -0.535 0.420 "O7'" A1KVY 18 A1KVY P P1 P 0 1 N N N N N N 4.728 4.532 8.050 -4.846 -1.250 0.132 P A1KVY 19 A1KVY O1P O3 O 0 1 N N N N N N 3.880 5.648 7.420 -4.918 -2.641 0.940 O1P A1KVY 20 A1KVY O2P O4 O 0 1 N N N N N N 4.026 3.221 7.662 -6.042 -0.286 0.614 O2P A1KVY 21 A1KVY O3P O5 O 0 1 N N N N N N 5.458 4.654 9.362 -4.978 -1.515 -1.318 O3P A1KVY 22 A1KVY C10 C11 C 0 1 N N N N N N 6.397 9.171 4.732 0.512 4.089 -0.425 C10 A1KVY 23 A1KVY C11 C12 C 0 1 N N N N N N 7.125 9.425 6.082 1.827 4.521 0.228 C11 A1KVY 24 A1KVY F1 F1 F 0 1 N N N N N N 7.408 10.729 5.957 2.200 5.777 -0.262 F1 A1KVY 25 A1KVY H21 H1 H 0 1 N N N N N N 10.885 5.382 -0.755 5.246 -0.695 2.465 H21 A1KVY 26 A1KVY H81 H2 H 0 1 N N N N N N 4.536 5.833 0.907 0.481 -1.463 -1.905 H81 A1KVY 27 A1KVY H61 H3 H 0 1 N N N N N N 7.864 4.823 -4.082 4.589 -3.990 -1.607 H61 A1KVY 28 A1KVY H62 H4 H 0 1 N N N N N N 6.596 4.202 -3.261 5.938 -3.997 -0.604 H62 A1KVY 29 A1KVY "H1'1" H5 H 0 0 N N N N N N 8.035 6.061 2.733 0.716 0.449 1.359 "H1'1" A1KVY 30 A1KVY "H2'1" H6 H 0 0 N N N N N N 7.213 8.318 2.283 2.075 2.000 0.014 "H2'1" A1KVY 31 A1KVY "H2'2" H7 H 0 0 N N N N N N 5.531 7.820 2.669 1.075 1.661 -1.420 "H2'2" A1KVY 32 A1KVY "H4'1" H9 H 0 0 N N N N N N 6.466 7.018 6.239 -1.939 3.189 0.008 "H4'1" A1KVY 33 A1KVY "H4'2" H10 H 0 0 N N N N N N 5.076 7.027 5.102 -1.282 2.359 -1.424 "H4'2" A1KVY 34 A1KVY "H5'1" H11 H 0 0 N N N N N N 7.560 5.284 4.993 -1.648 1.150 1.356 "H5'1" A1KVY 35 A1KVY "H6'1" H12 H 0 0 N N N N N N 4.645 4.568 5.545 -3.733 1.462 -0.014 "H6'1" A1KVY 36 A1KVY "H6'2" H13 H 0 0 N N N N N N 5.991 3.392 5.356 -2.982 0.501 -1.311 "H6'2" A1KVY 37 A1KVY H2 H14 H 0 1 N N N N N N 3.892 6.412 7.984 -5.745 -3.126 0.813 H2 A1KVY 38 A1KVY H3 H15 H 0 1 N N N N N N 4.143 2.582 8.355 -6.018 -0.070 1.556 H3 A1KVY 39 A1KVY H101 H16 H 0 0 N N N N N N 6.680 9.926 3.984 0.644 4.034 -1.506 H101 A1KVY 40 A1KVY H102 H17 H 0 0 N N N N N N 5.305 9.179 4.866 -0.266 4.816 -0.191 H102 A1KVY 41 A1KVY H111 H18 H 0 0 N N N N N N 6.467 9.231 6.942 1.695 4.576 1.308 H111 A1KVY 42 A1KVY H112 H19 H 0 0 N N N N N N 8.037 8.817 6.174 2.604 3.794 -0.007 H112 A1KVY 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1KVY N1 C2 DOUB Y N 1 A1KVY N1 C6 SING Y N 2 A1KVY C2 N3 SING Y N 3 A1KVY N3 C4 DOUB Y N 4 A1KVY C4 C5 SING Y N 5 A1KVY C4 N9 SING Y N 6 A1KVY C5 C6 DOUB Y N 7 A1KVY C5 N7 SING Y N 8 A1KVY C6 N6 SING N N 9 A1KVY N7 C8 DOUB Y N 10 A1KVY C8 N9 SING Y N 11 A1KVY N9 "C1'" SING N N 12 A1KVY "C1'" "C2'" SING N N 13 A1KVY "C1'" "O6'" SING N N 14 A1KVY "C2'" "N3'" SING N N 15 A1KVY "N3'" "C4'" SING N N 16 A1KVY "N3'" C10 SING N N 17 A1KVY "C4'" "C5'" SING N N 18 A1KVY "C5'" "O6'" SING N N 19 A1KVY "C5'" "C6'" SING N N 20 A1KVY "C6'" "O7'" SING N N 21 A1KVY "O7'" P SING N N 22 A1KVY P O1P SING N N 23 A1KVY P O2P SING N N 24 A1KVY C10 C11 SING N N 25 A1KVY C11 F1 SING N N 26 A1KVY O3P P DOUB N N 27 A1KVY C2 H21 SING N N 28 A1KVY C8 H81 SING N N 29 A1KVY N6 H61 SING N N 30 A1KVY N6 H62 SING N N 31 A1KVY "C1'" "H1'1" SING N N 32 A1KVY "C2'" "H2'1" SING N N 33 A1KVY "C2'" "H2'2" SING N N 34 A1KVY "C4'" "H4'1" SING N N 35 A1KVY "C4'" "H4'2" SING N N 36 A1KVY "C5'" "H5'1" SING N N 37 A1KVY "C6'" "H6'1" SING N N 38 A1KVY "C6'" "H6'2" SING N N 39 A1KVY O1P H2 SING N N 40 A1KVY O2P H3 SING N N 41 A1KVY C10 H101 SING N N 42 A1KVY C10 H102 SING N N 43 A1KVY C11 H111 SING N N 44 A1KVY C11 H112 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1KVY InChI InChI 1.06 "InChI=1S/C12H18FN6O5P/c13-1-2-18-3-8(5-23-25(20,21)22)24-9(4-18)19-7-17-10-11(14)15-6-16-12(10)19/h6-9H,1-5H2,(H2,14,15,16)(H2,20,21,22)/t8-,9+/m0/s1" A1KVY InChIKey InChI 1.06 ZSQCAKOERXNDQB-DTWKUNHWSA-N A1KVY SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@H]3CN(CCF)C[C@@H](CO[P](O)(O)=O)O3" A1KVY SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3CN(CCF)C[CH](CO[P](O)(O)=O)O3" A1KVY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3CN(C[C@H](O3)COP(=O)(O)O)CCF)N" A1KVY SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3CN(CC(O3)COP(=O)(O)O)CCF)N" # _pdbx_chem_comp_identifier.comp_id A1KVY _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},6~{R})-6-(6-aminopurin-9-yl)-4-(2-fluoranylethyl)morpholin-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1KVY "Create component" 2026-11-02 PDBE A1KVY "Initial release" 2026-11-11 RCSB #