data_A1L # _chem_comp.id A1L _chem_comp.name "[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H31 N9 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-25 _chem_comp.pdbx_modified_date 2013-09-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 493.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WD2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L C9 C9 C 0 1 N N N -20.583 -7.054 -31.305 9.951 0.432 0.775 C9 A1L 1 A1L N6 N6 N 0 1 N N N -21.011 -6.155 -30.203 8.615 0.142 1.302 N6 A1L 2 A1L C8 C8 C 0 1 N N N -20.336 -5.019 -29.960 7.538 0.239 0.498 C8 A1L 3 A1L O3 O3 O 0 1 N N N -19.341 -4.634 -30.596 7.675 0.567 -0.664 O3 A1L 4 A1L N4 N4 N 0 1 N N N -20.801 -4.296 -28.912 6.309 -0.027 0.983 N4 A1L 5 A1L C7 C7 C 0 1 N N N -20.321 -3.121 -28.465 5.206 0.072 0.159 C7 A1L 6 A1L N5 N5 N 0 1 N N N -19.258 -2.496 -29.032 5.352 0.423 -1.086 N5 A1L 7 A1L N3 N3 N 0 1 N N N -20.951 -2.627 -27.387 3.952 -0.200 0.653 N3 A1L 8 A1L C6 C6 C 0 1 N N N -20.568 -1.404 -26.661 2.781 -0.094 -0.221 C6 A1L 9 A1L C5 C5 C 0 1 N N N -20.797 -0.226 -27.560 1.520 -0.447 0.571 C5 A1L 10 A1L C4 C4 C 0 1 N N N -21.624 0.874 -26.910 0.287 -0.218 -0.306 C4 A1L 11 A1L C2 C2 C 0 1 N N S -21.865 1.875 -28.035 -0.978 -0.451 0.523 C2 A1L 12 A1L N2 N2 N 0 1 N N N -20.933 1.430 -29.111 -1.054 -1.862 0.910 N2 A1L 13 A1L C3 C3 C 0 1 N N N -20.781 1.963 -30.319 -1.104 -2.819 -0.038 C3 A1L 14 A1L O1 O1 O 0 1 N N N -21.387 2.963 -30.693 -1.086 -2.513 -1.211 O1 A1L 15 A1L C10 C10 C 0 1 N N N -19.751 1.229 -31.231 -1.183 -4.270 0.361 C10 A1L 16 A1L N7 N7 N -1 1 N N N -19.475 2.053 -32.426 -1.226 -5.105 -0.842 N7 A1L 17 A1L N8 N8 N 1 1 N N N -19.249 1.514 -33.415 -1.294 -6.349 -0.738 N8 A1L 18 A1L N9 N9 N 0 1 N N N -18.922 1.175 -34.468 -1.349 -7.378 -0.651 N9 A1L 19 A1L C1 C1 C 0 1 N N N -21.579 3.295 -27.546 -2.189 -0.089 -0.297 C1 A1L 20 A1L O2 O2 O 0 1 N N N -20.470 3.792 -27.746 -2.627 -0.874 -1.111 O2 A1L 21 A1L N1 N1 N 0 1 N N N -22.581 3.946 -26.928 -2.785 1.108 -0.126 N1 A1L 22 A1L C12 C12 C 0 1 N N N -22.373 5.346 -26.453 -2.197 2.096 0.781 C12 A1L 23 A1L C13 C13 C 0 1 Y N N -21.752 6.211 -27.589 -1.344 3.056 -0.006 C13 A1L 24 A1L C20 C20 C 0 1 Y N N -21.012 7.360 -27.297 -1.926 4.139 -0.640 C20 A1L 25 A1L C21 C21 C 0 1 Y N N -20.446 8.103 -28.349 -1.143 5.019 -1.363 C21 A1L 26 A1L C22 C22 C 0 1 Y N N -20.615 7.732 -29.687 0.222 4.817 -1.453 C22 A1L 27 A1L C23 C23 C 0 1 Y N N -21.355 6.592 -29.990 0.804 3.735 -0.820 C23 A1L 28 A1L C24 C24 C 0 1 Y N N -21.912 5.847 -28.938 0.022 2.858 -0.091 C24 A1L 29 A1L C11 C11 C 0 1 N N N -23.898 3.313 -26.677 -4.022 1.420 -0.847 C11 A1L 30 A1L C14 C14 C 0 1 Y N N -24.934 3.476 -27.827 -5.207 1.108 0.029 C14 A1L 31 A1L C15 C15 C 0 1 Y N N -24.547 3.542 -29.172 -5.712 -0.178 0.078 C15 A1L 32 A1L C16 C16 C 0 1 Y N N -25.507 3.677 -30.184 -6.796 -0.465 0.886 C16 A1L 33 A1L C17 C17 C 0 1 Y N N -26.863 3.741 -29.863 -7.375 0.533 1.646 C17 A1L 34 A1L C18 C18 C 0 1 Y N N -27.262 3.671 -28.529 -6.870 1.819 1.598 C18 A1L 35 A1L C19 C19 C 0 1 Y N N -26.301 3.537 -27.520 -5.786 2.107 0.790 C19 A1L 36 A1L H1 H1 H 0 1 N N N -21.252 -7.926 -31.349 9.984 1.459 0.414 H1 A1L 37 A1L H2 H2 H 0 1 N N N -20.627 -6.510 -32.260 10.690 0.301 1.566 H2 A1L 38 A1L H3 H3 H 0 1 N N N -19.552 -7.392 -31.123 10.174 -0.250 -0.046 H3 A1L 39 A1L H4 H4 H 0 1 N N N -21.803 -6.395 -29.641 8.506 -0.119 2.230 H4 A1L 40 A1L H5 H5 H 0 1 N N N -21.584 -4.676 -28.419 6.200 -0.289 1.911 H5 A1L 41 A1L H6 H6 H 0 1 N N N -19.021 -1.651 -28.553 4.577 0.493 -1.665 H6 A1L 42 A1L H7 H7 H 0 1 N N N -21.746 -3.131 -27.049 3.843 -0.461 1.581 H7 A1L 43 A1L H8 H8 H 0 1 N N N -19.506 -1.456 -26.381 2.700 0.925 -0.599 H8 A1L 44 A1L H9 H9 H 0 1 N N N -21.182 -1.303 -25.754 2.890 -0.784 -1.058 H9 A1L 45 A1L H10 H10 H 0 1 N N N -21.323 -0.572 -28.462 1.562 -1.493 0.873 H10 A1L 46 A1L H11 H11 H 0 1 N N N -19.820 0.193 -27.843 1.459 0.186 1.456 H11 A1L 47 A1L H12 H12 H 0 1 N N N -21.070 1.342 -26.083 0.293 0.806 -0.680 H12 A1L 48 A1L H13 H13 H 0 1 N N N -22.577 0.474 -26.533 0.305 -0.912 -1.146 H13 A1L 49 A1L H14 H14 H 0 1 N N N -22.907 1.804 -28.380 -0.945 0.170 1.418 H14 A1L 50 A1L H15 H15 H 0 1 N N N -20.357 0.641 -28.899 -1.069 -2.107 1.848 H15 A1L 51 A1L H16 H16 H 0 1 N N N -20.164 0.258 -31.543 -0.307 -4.533 0.954 H16 A1L 52 A1L H17 H17 H 0 1 N N N -18.817 1.068 -30.673 -2.085 -4.437 0.951 H17 A1L 53 A1L H19 H19 H 0 1 N N N -21.693 5.339 -25.588 -2.992 2.646 1.285 H19 A1L 54 A1L H20 H20 H 0 1 N N N -23.341 5.777 -26.156 -1.581 1.587 1.523 H20 A1L 55 A1L H21 H21 H 0 1 N N N -20.876 7.675 -26.273 -2.992 4.296 -0.570 H21 A1L 56 A1L H22 H22 H 0 1 N N N -19.865 8.984 -28.117 -1.598 5.864 -1.858 H22 A1L 57 A1L H23 H23 H 0 1 N N N -20.176 8.324 -30.477 0.833 5.505 -2.018 H23 A1L 58 A1L H24 H24 H 0 1 N N N -21.498 6.286 -31.016 1.870 3.578 -0.890 H24 A1L 59 A1L H25 H25 H 0 1 N N N -22.484 4.962 -29.174 0.477 2.013 0.404 H25 A1L 60 A1L H26 H26 H 0 1 N N N -24.324 3.761 -25.767 -4.032 2.478 -1.109 H26 A1L 61 A1L H27 H27 H 0 1 N N N -23.735 2.237 -26.514 -4.074 0.820 -1.756 H27 A1L 62 A1L H28 H28 H 0 1 N N N -23.500 3.488 -29.431 -5.259 -0.958 -0.516 H28 A1L 63 A1L H29 H29 H 0 1 N N N -25.196 3.732 -31.217 -7.190 -1.470 0.923 H29 A1L 64 A1L H30 H30 H 0 1 N N N -27.601 3.844 -30.645 -8.222 0.309 2.277 H30 A1L 65 A1L H31 H31 H 0 1 N N N -28.310 3.720 -28.275 -7.322 2.599 2.192 H31 A1L 66 A1L H32 H32 H 0 1 N N N -26.617 3.480 -26.489 -5.389 3.110 0.756 H32 A1L 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L N9 N8 TRIP N N 1 A1L N8 N7 SING N N 2 A1L N7 C10 SING N N 3 A1L C9 N6 SING N N 4 A1L C10 C3 SING N N 5 A1L O1 C3 DOUB N N 6 A1L O3 C8 DOUB N N 7 A1L C3 N2 SING N N 8 A1L N6 C8 SING N N 9 A1L C16 C17 DOUB Y N 10 A1L C16 C15 SING Y N 11 A1L C23 C22 DOUB Y N 12 A1L C23 C24 SING Y N 13 A1L C8 N4 SING N N 14 A1L C17 C18 SING Y N 15 A1L C22 C21 SING Y N 16 A1L C15 C14 DOUB Y N 17 A1L N2 C2 SING N N 18 A1L N5 C7 DOUB N N 19 A1L C24 C13 DOUB Y N 20 A1L N4 C7 SING N N 21 A1L C18 C19 DOUB Y N 22 A1L C7 N3 SING N N 23 A1L C21 C20 DOUB Y N 24 A1L C2 C1 SING N N 25 A1L C2 C4 SING N N 26 A1L C14 C19 SING Y N 27 A1L C14 C11 SING N N 28 A1L O2 C1 DOUB N N 29 A1L C13 C20 SING Y N 30 A1L C13 C12 SING N N 31 A1L C5 C4 SING N N 32 A1L C5 C6 SING N N 33 A1L C1 N1 SING N N 34 A1L N3 C6 SING N N 35 A1L N1 C11 SING N N 36 A1L N1 C12 SING N N 37 A1L C9 H1 SING N N 38 A1L C9 H2 SING N N 39 A1L C9 H3 SING N N 40 A1L N6 H4 SING N N 41 A1L N4 H5 SING N N 42 A1L N5 H6 SING N N 43 A1L N3 H7 SING N N 44 A1L C6 H8 SING N N 45 A1L C6 H9 SING N N 46 A1L C5 H10 SING N N 47 A1L C5 H11 SING N N 48 A1L C4 H12 SING N N 49 A1L C4 H13 SING N N 50 A1L C2 H14 SING N N 51 A1L N2 H15 SING N N 52 A1L C10 H16 SING N N 53 A1L C10 H17 SING N N 54 A1L C12 H19 SING N N 55 A1L C12 H20 SING N N 56 A1L C20 H21 SING N N 57 A1L C21 H22 SING N N 58 A1L C22 H23 SING N N 59 A1L C23 H24 SING N N 60 A1L C24 H25 SING N N 61 A1L C11 H26 SING N N 62 A1L C11 H27 SING N N 63 A1L C15 H28 SING N N 64 A1L C16 H29 SING N N 65 A1L C17 H30 SING N N 66 A1L C18 H31 SING N N 67 A1L C19 H32 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L SMILES ACDLabs 12.01 "N#[N+][N-]CC(=O)NC(C(=O)N(Cc1ccccc1)Cc2ccccc2)CCCNC(=[N@H])NC(=O)NC" A1L InChI InChI 1.03 "InChI=1S/C24H31N9O3/c1-27-24(36)31-23(25)28-14-8-13-20(30-21(34)15-29-32-26)22(35)33(16-18-9-4-2-5-10-18)17-19-11-6-3-7-12-19/h2-7,9-12,20H,8,13-17H2,1H3,(H,30,34)(H4,25,27,28,31,36)/t20-/m0/s1" A1L InChIKey InChI 1.03 WCLXSHAWFUUDKF-FQEVSTJZSA-N A1L SMILES_CANONICAL CACTVS 3.385 "CNC(=O)NC(=N)NCCC[C@H](NC(=O)C[N-][N+]#N)C(=O)N(Cc1ccccc1)Cc2ccccc2" A1L SMILES CACTVS 3.385 "CNC(=O)NC(=N)NCCC[CH](NC(=O)C[N-][N+]#N)C(=O)N(Cc1ccccc1)Cc2ccccc2" A1L SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\NCCC[C@@H](C(=O)N(Cc1ccccc1)Cc2ccccc2)NC(=O)C[N-][N+]#N)/NC(=O)NC" A1L SMILES "OpenEye OEToolkits" 1.7.6 "CNC(=O)NC(=N)NCCCC(C(=O)N(Cc1ccccc1)Cc2ccccc2)NC(=O)C[N-][N+]#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1L "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-(azidoacetyl)-N,N-dibenzyl-N~5~-[N-(methylcarbamoyl)carbamimidoyl]-L-ornithinamide" A1L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L "Create component" 2013-06-25 PDBJ A1L "Initial release" 2013-09-18 RCSB #