data_A1L08 # _chem_comp.id A1L08 _chem_comp.name "3,6,6-trimethyl-4-oxidanylidene-~{N}-[(2~{S})-1-oxidanylidene-1-[(phenylmethyl)amino]hexan-2-yl]-5,7-dihydro-1~{H}-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H33 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-24 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 423.548 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L08 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Z7D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L08 C10 C1 C 0 1 N N N N N N 33.372 -3.297 181.131 1.081 2.672 0.558 C10 A1L08 1 A1L08 C12 C2 C 0 1 N N N N N N 35.010 -3.167 179.148 0.514 4.989 1.302 C12 A1L08 2 A1L08 C16 C3 C 0 1 N N N N N N 33.219 -8.975 180.752 4.826 -1.755 0.140 C16 A1L08 3 A1L08 C17 C4 C 0 1 Y N N N N N 34.627 -9.095 181.323 6.250 -1.288 -0.015 C17 A1L08 4 A1L08 C19 C5 C 0 1 Y N N N N N 36.186 -9.983 182.971 8.256 -0.396 0.941 C19 A1L08 5 A1L08 C20 C6 C 0 1 Y N N N N N 37.255 -9.304 182.420 8.863 -0.431 -0.301 C20 A1L08 6 A1L08 C22 C7 C 0 1 Y N N N N N 35.726 -8.416 180.796 6.855 -1.318 -1.257 C22 A1L08 7 A1L08 C23 C8 C 0 1 Y N N N N N 27.681 -4.524 183.291 -3.224 0.709 -1.044 C23 A1L08 8 A1L08 C24 C9 C 0 1 N N N N N N 28.491 -3.491 184.006 -3.240 1.936 -1.918 C24 A1L08 9 A1L08 C25 C10 C 0 1 Y N N N N N 26.270 -4.748 183.334 -4.331 -0.048 -0.644 C25 A1L08 10 A1L08 C26 C11 C 0 1 N N N N N N 25.195 -4.094 184.075 -5.762 0.113 -0.944 C26 A1L08 11 A1L08 C28 C12 C 0 1 N N N N N N 23.755 -4.576 183.887 -6.641 -1.067 -0.554 C28 A1L08 12 A1L08 C29 C13 C 0 1 N N N N N N 23.491 -5.236 182.522 -6.203 -1.560 0.829 C29 A1L08 13 A1L08 C30 C14 C 0 1 N N N N N N 22.110 -5.862 182.511 -6.254 -0.394 1.819 C30 A1L08 14 A1L08 C31 C15 C 0 1 N N N N N N 23.532 -4.131 181.417 -7.157 -2.661 1.297 C31 A1L08 15 A1L08 C01 C16 C 0 1 N N N N N N 24.538 -6.302 182.322 -4.777 -2.116 0.779 C01 A1L08 16 A1L08 C02 C17 C 0 1 Y N N N N N 25.955 -5.813 182.495 -3.865 -1.090 0.158 C02 A1L08 17 A1L08 N03 N1 N 0 1 Y N N N N N 27.112 -6.231 181.942 -2.539 -0.979 0.244 N03 A1L08 18 A1L08 C04 C18 C 0 1 Y N N N N N 28.214 -5.473 182.416 -2.123 0.116 -0.491 C04 A1L08 19 A1L08 C05 C19 C 0 1 N N N N N N 29.550 -5.736 181.932 -0.735 0.571 -0.642 C05 A1L08 20 A1L08 O06 O1 O 0 1 N N N N N N 29.669 -6.528 181.029 -0.487 1.552 -1.317 O06 A1L08 21 A1L08 N07 N2 N 0 1 N N N N N N 30.699 -5.174 182.362 0.264 -0.099 -0.034 N07 A1L08 22 A1L08 C08 C20 C 0 1 N N S N N N 32.000 -5.442 181.807 1.648 0.355 -0.185 C08 A1L08 23 A1L08 C09 C21 C 0 1 N N N N N N 33.193 -4.496 182.106 1.944 1.443 0.850 C09 A1L08 24 A1L08 C11 C22 C 0 1 N N N N N N 33.661 -3.592 179.661 1.377 3.760 1.593 C11 A1L08 25 A1L08 C13 C23 C 0 1 N N N N N N 32.335 -6.938 181.878 2.584 -0.807 0.026 C13 A1L08 26 A1L08 O14 O2 O 0 1 N N N N N N 32.078 -7.543 182.904 2.138 -1.907 0.278 O14 A1L08 27 A1L08 N15 N3 N 0 1 N N N N N N 32.833 -7.588 180.784 3.916 -0.625 -0.065 N15 A1L08 28 A1L08 C18 C24 C 0 1 Y N N N N N 34.913 -9.876 182.443 6.949 -0.824 1.083 C18 A1L08 29 A1L08 C21 C25 C 0 1 Y N N N N N 37.007 -8.511 181.318 8.162 -0.890 -1.400 C21 A1L08 30 A1L08 O27 O3 O 0 1 N N N N N N 25.388 -3.173 184.859 -6.210 1.113 -1.464 O27 A1L08 31 A1L08 H1 H1 H 0 1 N N N N N N 34.207 -2.691 181.511 1.309 3.048 -0.439 H1 A1L08 32 A1L08 H2 H2 H 0 1 N N N N N N 32.444 -2.707 181.168 0.028 2.397 0.611 H2 A1L08 33 A1L08 H3 H3 H 0 1 N N N N N N 35.098 -3.432 178.084 -0.539 4.714 1.355 H3 A1L08 34 A1L08 H4 H4 H 0 1 N N N N N N 35.121 -2.079 179.265 0.725 5.764 2.039 H4 A1L08 35 A1L08 H5 H5 H 0 1 N N N N N N 35.798 -3.679 179.720 0.742 5.365 0.304 H5 A1L08 36 A1L08 H6 H6 H 0 1 N N N N N N 32.520 -9.569 181.359 4.615 -2.530 -0.596 H6 A1L08 37 A1L08 H7 H7 H 0 1 N N N N N N 33.206 -9.340 179.715 4.683 -2.159 1.143 H7 A1L08 38 A1L08 H8 H8 H 0 1 N N N N N N 36.348 -10.612 183.834 8.803 -0.037 1.800 H8 A1L08 39 A1L08 H9 H9 H 0 1 N N N N N N 38.248 -9.390 182.836 9.885 -0.099 -0.412 H9 A1L08 40 A1L08 H10 H10 H 0 1 N N N N N N 35.571 -7.782 179.935 6.308 -1.677 -2.116 H10 A1L08 41 A1L08 H11 H11 H 0 1 N N N N N N 28.558 -2.584 183.387 -3.349 2.825 -1.296 H11 A1L08 42 A1L08 H12 H12 H 0 1 N N N N N N 28.009 -3.246 184.964 -2.307 1.996 -2.478 H12 A1L08 43 A1L08 H13 H13 H 0 1 N N N N N N 29.502 -3.883 184.193 -4.078 1.875 -2.614 H13 A1L08 44 A1L08 H14 H14 H 0 1 N N N N N N 23.084 -3.710 183.989 -7.683 -0.752 -0.518 H14 A1L08 45 A1L08 H15 H15 H 0 1 N N N N N N 23.530 -5.309 184.675 -6.524 -1.868 -1.283 H15 A1L08 46 A1L08 H16 H16 H 0 1 N N N N N N 22.056 -6.645 183.282 -7.273 -0.009 1.874 H16 A1L08 47 A1L08 H17 H17 H 0 1 N N N N N N 21.356 -5.089 182.720 -5.944 -0.741 2.805 H17 A1L08 48 A1L08 H18 H18 H 0 1 N N N N N N 21.917 -6.306 181.523 -5.584 0.397 1.484 H18 A1L08 49 A1L08 H19 H19 H 0 1 N N N N N N 22.749 -3.384 181.615 -7.131 -3.489 0.589 H19 A1L08 50 A1L08 H20 H20 H 0 1 N N N N N N 24.517 -3.641 181.425 -6.849 -3.014 2.281 H20 A1L08 51 A1L08 H21 H21 H 0 1 N N N N N N 23.360 -4.591 180.433 -8.170 -2.263 1.354 H21 A1L08 52 A1L08 H22 H22 H 0 1 N N N N N N 24.433 -6.703 181.303 -4.438 -2.341 1.791 H22 A1L08 53 A1L08 H23 H23 H 0 1 N N N N N N 24.358 -7.105 183.052 -4.763 -3.027 0.180 H23 A1L08 54 A1L08 H24 H24 H 0 1 N N N N N N 27.184 -6.979 181.282 -1.956 -1.577 0.738 H24 A1L08 55 A1L08 H25 H25 H 0 1 N N N N N N 30.643 -4.525 183.121 0.066 -0.881 0.504 H25 A1L08 56 A1L08 H26 H26 H 0 1 N N N N N N 31.847 -5.288 180.729 1.791 0.759 -1.188 H26 A1L08 57 A1L08 H27 H27 H 0 1 N N N N N N 34.115 -5.096 182.075 2.998 1.717 0.797 H27 A1L08 58 A1L08 H28 H28 H 0 1 N N N N N N 33.055 -4.089 183.118 1.717 1.067 1.847 H28 A1L08 59 A1L08 H29 H29 H 0 1 N N N N N N 32.897 -3.078 179.060 1.150 3.384 2.590 H29 A1L08 60 A1L08 H30 H30 H 0 1 N N N N N N 33.574 -4.679 179.514 2.431 4.034 1.540 H30 A1L08 61 A1L08 H31 H31 H 0 1 N N N N N N 32.937 -7.060 179.941 4.273 0.254 -0.267 H31 A1L08 62 A1L08 H32 H32 H 0 1 N N N N N N 34.108 -10.418 182.916 6.475 -0.796 2.053 H32 A1L08 63 A1L08 H33 H33 H 0 1 N N N N N N 37.816 -7.961 180.859 8.635 -0.914 -2.371 H33 A1L08 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L08 C12 C11 SING N N 1 A1L08 C11 C10 SING N N 2 A1L08 C16 N15 SING N N 3 A1L08 C16 C17 SING N N 4 A1L08 N15 C13 SING N N 5 A1L08 C22 C21 DOUB Y N 6 A1L08 C22 C17 SING Y N 7 A1L08 O06 C05 DOUB N N 8 A1L08 C10 C09 SING N N 9 A1L08 C21 C20 SING Y N 10 A1L08 C17 C18 DOUB Y N 11 A1L08 C31 C29 SING N N 12 A1L08 C08 C13 SING N N 13 A1L08 C08 C09 SING N N 14 A1L08 C08 N07 SING N N 15 A1L08 C13 O14 DOUB N N 16 A1L08 C05 N07 SING N N 17 A1L08 C05 C04 SING N N 18 A1L08 N03 C04 SING Y N 19 A1L08 N03 C02 SING Y N 20 A1L08 C01 C02 SING N N 21 A1L08 C01 C29 SING N N 22 A1L08 C04 C23 DOUB Y N 23 A1L08 C20 C19 DOUB Y N 24 A1L08 C18 C19 SING Y N 25 A1L08 C02 C25 DOUB Y N 26 A1L08 C30 C29 SING N N 27 A1L08 C29 C28 SING N N 28 A1L08 C23 C25 SING Y N 29 A1L08 C23 C24 SING N N 30 A1L08 C25 C26 SING N N 31 A1L08 C28 C26 SING N N 32 A1L08 C26 O27 DOUB N N 33 A1L08 C10 H1 SING N N 34 A1L08 C10 H2 SING N N 35 A1L08 C12 H3 SING N N 36 A1L08 C12 H4 SING N N 37 A1L08 C12 H5 SING N N 38 A1L08 C16 H6 SING N N 39 A1L08 C16 H7 SING N N 40 A1L08 C19 H8 SING N N 41 A1L08 C20 H9 SING N N 42 A1L08 C22 H10 SING N N 43 A1L08 C24 H11 SING N N 44 A1L08 C24 H12 SING N N 45 A1L08 C24 H13 SING N N 46 A1L08 C28 H14 SING N N 47 A1L08 C28 H15 SING N N 48 A1L08 C30 H16 SING N N 49 A1L08 C30 H17 SING N N 50 A1L08 C30 H18 SING N N 51 A1L08 C31 H19 SING N N 52 A1L08 C31 H20 SING N N 53 A1L08 C31 H21 SING N N 54 A1L08 C01 H22 SING N N 55 A1L08 C01 H23 SING N N 56 A1L08 N03 H24 SING N N 57 A1L08 N07 H25 SING N N 58 A1L08 C08 H26 SING N N 59 A1L08 C09 H27 SING N N 60 A1L08 C09 H28 SING N N 61 A1L08 C11 H29 SING N N 62 A1L08 C11 H30 SING N N 63 A1L08 N15 H31 SING N N 64 A1L08 C18 H32 SING N N 65 A1L08 C21 H33 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L08 InChI InChI 1.06 "InChI=1S/C25H33N3O3/c1-5-6-12-18(23(30)26-15-17-10-8-7-9-11-17)28-24(31)22-16(2)21-19(27-22)13-25(3,4)14-20(21)29/h7-11,18,27H,5-6,12-15H2,1-4H3,(H,26,30)(H,28,31)/t18-/m0/s1" A1L08 InChIKey InChI 1.06 FKYWIFNZDJPACP-SFHVURJKSA-N A1L08 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)C(=O)NCc3ccccc3" A1L08 SMILES CACTVS 3.385 "CCCC[CH](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)C(=O)NCc3ccccc3" A1L08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C(=O)NCc1ccccc1)NC(=O)c2c(c3c([nH]2)CC(CC3=O)(C)C)C" A1L08 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(C(=O)NCc1ccccc1)NC(=O)c2c(c3c([nH]2)CC(CC3=O)(C)C)C" # _pdbx_chem_comp_identifier.comp_id A1L08 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3,6,6-trimethyl-4-oxidanylidene-~{N}-[(2~{S})-1-oxidanylidene-1-[(phenylmethyl)amino]hexan-2-yl]-5,7-dihydro-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L08 "Create component" 2024-04-24 PDBJ A1L08 "Initial release" 2025-01-22 RCSB #