data_A1L09 # _chem_comp.id A1L09 _chem_comp.name "~{N}-[(2~{S})-1-[[4-[(dimethylamino)methyl]phenyl]methylamino]-1-oxidanylidene-hexan-2-yl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H40 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-04-24 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.642 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Z7E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L09 C10 C1 C 0 1 N N N N N N 133.552 22.347 129.714 0.047 2.494 -0.652 C10 A1L09 1 A1L09 C11 C2 C 0 1 N N N N N N 132.072 22.001 129.421 -0.290 3.549 -1.709 C11 A1L09 2 A1L09 C12 C3 C 0 1 N N N N N N 131.288 21.636 130.668 0.499 4.828 -1.422 C12 A1L09 3 A1L09 C13 C4 C 0 1 N N N N N N 133.059 25.977 131.063 -1.272 -1.054 -0.093 C13 A1L09 4 A1L09 C16 C5 C 0 1 N N N N N N 131.466 27.001 132.700 -3.456 -2.126 -0.230 C16 A1L09 5 A1L09 C01 C6 C 0 1 N N N N N N 135.974 28.459 123.890 6.163 -1.963 -0.703 C01 A1L09 6 A1L09 C02 C7 C 0 1 Y N N N N N 135.828 27.542 125.021 5.183 -0.983 -0.109 C02 A1L09 7 A1L09 N03 N1 N 0 1 Y N N N N N 134.831 27.498 125.928 3.855 -0.946 -0.220 N03 A1L09 8 A1L09 C04 C8 C 0 1 Y N N N N N 135.051 26.496 126.864 3.367 0.134 0.490 C04 A1L09 9 A1L09 C05 C9 C 0 1 N N N N N N 134.136 26.166 127.937 1.954 0.514 0.611 C05 A1L09 10 A1L09 O06 O1 O 0 1 N N N N N N 133.032 26.708 127.918 1.640 1.490 1.266 O06 A1L09 11 A1L09 N07 N2 N 0 1 N N N N N N 134.393 25.278 128.971 1.005 -0.218 -0.004 N07 A1L09 12 A1L09 C08 C10 C 0 1 N N S N N N 133.423 24.894 129.979 -0.405 0.161 0.117 C08 A1L09 13 A1L09 C09 C11 C 0 1 N N N N N N 133.783 23.568 130.631 -0.742 1.215 -0.939 C09 A1L09 14 A1L09 O14 O2 O 0 1 N N N N N N 133.924 26.796 131.374 -0.762 -2.131 -0.320 O14 A1L09 15 A1L09 N15 N3 N 0 1 N N N N N N 131.820 26.010 131.678 -2.614 -0.945 -0.027 N15 A1L09 16 A1L09 C17 C12 C 0 1 Y N N N N N 130.639 28.149 132.180 -4.906 -1.736 -0.106 C17 A1L09 17 A1L09 C18 C13 C 0 1 Y N N N N N 130.469 28.360 130.808 -5.531 -1.782 1.126 C18 A1L09 18 A1L09 C19 C14 C 0 1 Y N N N N N 129.701 29.407 130.295 -6.862 -1.425 1.239 C19 A1L09 19 A1L09 C20 C15 C 0 1 Y N N N N N 129.045 30.328 131.119 -7.567 -1.022 0.121 C20 A1L09 20 A1L09 C21 C16 C 0 1 N N N N N N 128.205 31.460 130.506 -9.018 -0.632 0.245 C21 A1L09 21 A1L09 N22 N4 N 0 1 N N N N N N 128.819 32.820 130.361 -9.116 0.807 0.523 N22 A1L09 22 A1L09 C23 C17 C 0 1 N N N N N N 129.109 33.461 131.674 -8.639 1.598 -0.618 C23 A1L09 23 A1L09 C24 C18 C 0 1 N N N N N N 130.092 32.811 129.575 -10.491 1.180 0.884 C24 A1L09 24 A1L09 C25 C19 C 0 1 Y N N N N N 129.209 30.115 132.494 -6.942 -0.975 -1.111 C25 A1L09 25 A1L09 C26 C20 C 0 1 Y N N N N N 129.983 29.059 133.007 -5.610 -1.328 -1.224 C26 A1L09 26 A1L09 C27 C21 C 0 1 Y N N N N N 136.252 25.848 126.491 4.422 0.790 1.062 C27 A1L09 27 A1L09 C28 C22 C 0 1 N N N N N N 136.939 24.687 127.131 4.356 2.024 1.924 C28 A1L09 28 A1L09 C29 C23 C 0 1 Y N N N N N 136.743 26.522 125.327 5.577 0.090 0.690 C29 A1L09 29 A1L09 C30 C24 C 0 1 N N N N N N 137.948 26.353 124.506 6.991 0.333 1.015 C30 A1L09 30 A1L09 O31 O3 O 0 1 N N N N N N 138.828 25.546 124.712 7.373 1.361 1.533 O31 A1L09 31 A1L09 C32 C25 C 0 1 N N N N N N 138.123 27.312 123.326 7.940 -0.800 0.653 C32 A1L09 32 A1L09 C33 C26 C 0 1 N N N N N N 136.828 27.901 122.760 7.556 -1.329 -0.733 C33 A1L09 33 A1L09 C34 C27 C 0 1 N N N N N N 137.145 28.994 121.739 7.562 -0.172 -1.733 C34 A1L09 34 A1L09 C35 C28 C 0 1 N N N N N N 136.085 26.786 122.028 8.579 -2.379 -1.172 C35 A1L09 35 A1L09 H1 H1 H 0 1 N N N N N N 134.016 21.472 130.193 1.114 2.277 -0.683 H1 A1L09 36 A1L09 H2 H2 H 0 1 N N N N N N 134.050 22.546 128.753 -0.219 2.871 0.335 H2 A1L09 37 A1L09 H3 H3 H 0 1 N N N N N N 131.595 22.873 128.950 -0.024 3.172 -2.696 H3 A1L09 38 A1L09 H4 H4 H 0 1 N N N N N N 132.043 21.148 128.727 -1.358 3.766 -1.678 H4 A1L09 39 A1L09 H5 H5 H 0 1 N N N N N N 130.249 21.402 130.393 0.233 5.205 -0.434 H5 A1L09 40 A1L09 H6 H6 H 0 1 N N N N N N 131.747 20.758 131.146 1.566 4.611 -1.453 H6 A1L09 41 A1L09 H7 H7 H 0 1 N N N N N N 131.300 22.483 131.369 0.259 5.579 -2.174 H7 A1L09 42 A1L09 H8 H8 H 0 1 N N N N N N 130.894 26.493 133.491 -3.273 -2.536 -1.224 H8 A1L09 43 A1L09 H9 H9 H 0 1 N N N N N N 132.396 27.408 133.124 -3.216 -2.877 0.522 H9 A1L09 44 A1L09 H10 H10 H 0 1 N N N N N N 136.440 29.387 124.253 6.187 -2.867 -0.095 H10 A1L09 45 A1L09 H11 H11 H 0 1 N N N N N N 134.973 28.682 123.492 5.855 -2.216 -1.718 H11 A1L09 46 A1L09 H12 H12 H 0 1 N N N N N N 134.038 28.107 125.927 3.316 -1.578 -0.720 H12 A1L09 47 A1L09 H13 H13 H 0 1 N N N N N N 135.307 24.876 129.025 1.255 -0.996 -0.526 H13 A1L09 48 A1L09 H14 H14 H 0 1 N N N N N N 132.482 24.708 129.441 -0.588 0.570 1.110 H14 A1L09 49 A1L09 H15 H15 H 0 1 N N N N N N 133.168 23.446 131.535 -1.810 1.432 -0.909 H15 A1L09 50 A1L09 H16 H16 H 0 1 N N N N N N 134.846 23.596 130.912 -0.476 0.838 -1.927 H16 A1L09 51 A1L09 H17 H17 H 0 1 N N N N N N 131.137 25.329 131.415 -3.022 -0.084 0.155 H17 A1L09 52 A1L09 H18 H18 H 0 1 N N N N N N 130.952 27.685 130.117 -4.980 -2.097 2.000 H18 A1L09 53 A1L09 H19 H19 H 0 1 N N N N N N 129.610 29.510 129.224 -7.350 -1.461 2.202 H19 A1L09 54 A1L09 H20 H20 H 0 1 N N N N N N 127.310 31.575 131.135 -9.536 -0.858 -0.687 H20 A1L09 55 A1L09 H21 H21 H 0 1 N N N N N N 127.906 31.132 129.500 -9.476 -1.192 1.060 H21 A1L09 56 A1L09 H23 H23 H 0 1 N N N N N N 128.192 33.485 132.281 -9.243 1.370 -1.497 H23 A1L09 57 A1L09 H24 H24 H 0 1 N N N N N N 129.883 32.883 132.201 -8.723 2.659 -0.386 H24 A1L09 58 A1L09 H25 H25 H 0 1 N N N N N N 129.467 34.488 131.509 -7.596 1.352 -0.820 H25 A1L09 59 A1L09 H26 H26 H 0 1 N N N N N N 130.488 33.835 129.506 -10.795 0.630 1.775 H26 A1L09 60 A1L09 H27 H27 H 0 1 N N N N N N 130.828 32.166 130.077 -10.535 2.250 1.085 H27 A1L09 61 A1L09 H28 H28 H 0 1 N N N N N N 129.896 32.425 128.564 -11.162 0.937 0.060 H28 A1L09 62 A1L09 H29 H29 H 0 1 N N N N N N 128.723 30.787 133.186 -7.493 -0.660 -1.985 H29 A1L09 63 A1L09 H30 H30 H 0 1 N N N N N N 130.072 28.949 134.078 -5.121 -1.288 -2.186 H30 A1L09 64 A1L09 H31 H31 H 0 1 N N N N N N 137.645 25.052 127.891 4.251 1.732 2.969 H31 A1L09 65 A1L09 H32 H32 H 0 1 N N N N N N 136.191 24.036 127.608 5.269 2.605 1.798 H32 A1L09 66 A1L09 H33 H33 H 0 1 N N N N N N 137.486 24.117 126.365 3.498 2.628 1.628 H33 A1L09 67 A1L09 H34 H34 H 0 1 N N N N N N 138.629 26.765 122.517 8.965 -0.429 0.633 H34 A1L09 68 A1L09 H35 H35 H 0 1 N N N N N N 138.758 28.146 123.658 7.854 -1.600 1.388 H35 A1L09 69 A1L09 H36 H36 H 0 1 N N N N N N 137.682 29.816 122.235 8.559 0.269 -1.773 H36 A1L09 70 A1L09 H37 H37 H 0 1 N N N N N N 137.773 28.576 120.938 7.290 -0.544 -2.721 H37 A1L09 71 A1L09 H38 H38 H 0 1 N N N N N N 136.208 29.376 121.308 6.843 0.584 -1.419 H38 A1L09 72 A1L09 H39 H39 H 0 1 N N N N N N 135.841 25.981 122.736 8.586 -3.201 -0.456 H39 A1L09 73 A1L09 H40 H40 H 0 1 N N N N N N 135.157 27.187 121.595 8.309 -2.759 -2.158 H40 A1L09 74 A1L09 H41 H41 H 0 1 N N N N N N 136.722 26.387 121.225 9.569 -1.926 -1.215 H41 A1L09 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L09 C34 C33 SING N N 1 A1L09 C35 C33 SING N N 2 A1L09 C33 C32 SING N N 3 A1L09 C33 C01 SING N N 4 A1L09 C32 C30 SING N N 5 A1L09 C01 C02 SING N N 6 A1L09 C30 O31 DOUB N N 7 A1L09 C30 C29 SING N N 8 A1L09 C02 C29 DOUB Y N 9 A1L09 C02 N03 SING Y N 10 A1L09 C29 C27 SING Y N 11 A1L09 N03 C04 SING Y N 12 A1L09 C27 C04 DOUB Y N 13 A1L09 C27 C28 SING N N 14 A1L09 C04 C05 SING N N 15 A1L09 O06 C05 DOUB N N 16 A1L09 C05 N07 SING N N 17 A1L09 N07 C08 SING N N 18 A1L09 C11 C10 SING N N 19 A1L09 C11 C12 SING N N 20 A1L09 C24 N22 SING N N 21 A1L09 C10 C09 SING N N 22 A1L09 C08 C09 SING N N 23 A1L09 C08 C13 SING N N 24 A1L09 C19 C18 DOUB Y N 25 A1L09 C19 C20 SING Y N 26 A1L09 N22 C21 SING N N 27 A1L09 N22 C23 SING N N 28 A1L09 C21 C20 SING N N 29 A1L09 C18 C17 SING Y N 30 A1L09 C13 O14 DOUB N N 31 A1L09 C13 N15 SING N N 32 A1L09 C20 C25 DOUB Y N 33 A1L09 N15 C16 SING N N 34 A1L09 C17 C16 SING N N 35 A1L09 C17 C26 DOUB Y N 36 A1L09 C25 C26 SING Y N 37 A1L09 C10 H1 SING N N 38 A1L09 C10 H2 SING N N 39 A1L09 C11 H3 SING N N 40 A1L09 C11 H4 SING N N 41 A1L09 C12 H5 SING N N 42 A1L09 C12 H6 SING N N 43 A1L09 C12 H7 SING N N 44 A1L09 C16 H8 SING N N 45 A1L09 C16 H9 SING N N 46 A1L09 C01 H10 SING N N 47 A1L09 C01 H11 SING N N 48 A1L09 N03 H12 SING N N 49 A1L09 N07 H13 SING N N 50 A1L09 C08 H14 SING N N 51 A1L09 C09 H15 SING N N 52 A1L09 C09 H16 SING N N 53 A1L09 N15 H17 SING N N 54 A1L09 C18 H18 SING N N 55 A1L09 C19 H19 SING N N 56 A1L09 C21 H20 SING N N 57 A1L09 C21 H21 SING N N 58 A1L09 C23 H23 SING N N 59 A1L09 C23 H24 SING N N 60 A1L09 C23 H25 SING N N 61 A1L09 C24 H26 SING N N 62 A1L09 C24 H27 SING N N 63 A1L09 C24 H28 SING N N 64 A1L09 C25 H29 SING N N 65 A1L09 C26 H30 SING N N 66 A1L09 C28 H31 SING N N 67 A1L09 C28 H32 SING N N 68 A1L09 C28 H33 SING N N 69 A1L09 C32 H34 SING N N 70 A1L09 C32 H35 SING N N 71 A1L09 C34 H36 SING N N 72 A1L09 C34 H37 SING N N 73 A1L09 C34 H38 SING N N 74 A1L09 C35 H39 SING N N 75 A1L09 C35 H40 SING N N 76 A1L09 C35 H41 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L09 InChI InChI 1.06 "InChI=1S/C28H40N4O3/c1-7-8-9-21(26(34)29-16-19-10-12-20(13-11-19)17-32(5)6)31-27(35)25-18(2)24-22(30-25)14-28(3,4)15-23(24)33/h10-13,21,30H,7-9,14-17H2,1-6H3,(H,29,34)(H,31,35)/t21-/m0/s1" A1L09 InChIKey InChI 1.06 FJJHERPTGMLTTQ-NRFANRHFSA-N A1L09 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)C(=O)NCc3ccc(CN(C)C)cc3" A1L09 SMILES CACTVS 3.385 "CCCC[CH](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)C(=O)NCc3ccc(CN(C)C)cc3" A1L09 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C(=O)NCc1ccc(cc1)CN(C)C)NC(=O)c2c(c3c([nH]2)CC(CC3=O)(C)C)C" A1L09 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(C(=O)NCc1ccc(cc1)CN(C)C)NC(=O)c2c(c3c([nH]2)CC(CC3=O)(C)C)C" # _pdbx_chem_comp_identifier.comp_id A1L09 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-1-[[4-[(dimethylamino)methyl]phenyl]methylamino]-1-oxidanylidene-hexan-2-yl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L09 "Create component" 2024-04-24 PDBJ A1L09 "Initial release" 2025-01-22 RCSB #