data_A1L11 # _chem_comp.id A1L11 _chem_comp.name Pimavanserin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 F N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[(4-fluorophenyl)methyl]-1-(1-methylpiperidin-4-yl)-3-[[4-(2-methylpropoxy)phenyl]methyl]urea" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-24 _chem_comp.pdbx_modified_date 2024-08-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 427.555 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L11 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ZMG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L11 C1 C1 C 0 1 N N N N N N -18.487 11.586 33.186 -1.965 1.513 0.791 C1 A1L11 1 A1L11 C2 C2 C 0 1 N N N N N N -20.558 12.805 33.734 -3.993 0.218 1.596 C2 A1L11 2 A1L11 C3 C3 C 0 1 N N N N N N -17.455 12.702 33.190 -1.262 1.271 -0.547 C3 A1L11 3 A1L11 C4 C4 C 0 1 N N N N N N -19.122 11.562 31.802 -0.940 2.003 1.817 C4 A1L11 4 A1L11 C5 C5 C 0 1 N N N N N N -18.037 11.232 30.781 -0.270 3.276 1.293 C5 A1L11 5 A1L11 C6 C6 C 0 1 N N N N N N -16.368 12.345 32.185 -0.583 2.565 -1.003 C6 A1L11 6 A1L11 N1 N1 N 0 1 N N N N N N -19.941 12.038 36.438 -0.482 -0.781 1.168 N1 A1L11 7 A1L11 N2 N2 N 0 1 N N N N N N -16.935 12.212 30.832 0.389 2.992 0.012 N2 A1L11 8 A1L11 O1 O1 O 0 1 N N N N N N -17.679 16.277 40.473 5.717 -0.721 0.196 O1 A1L11 9 A1L11 C7 C7 C 0 1 Y N N N N N -21.899 12.205 34.100 -4.787 -0.154 0.370 C7 A1L11 10 A1L11 C8 C8 C 0 1 N N N N N N -19.607 11.687 37.800 0.324 -2.004 1.195 C8 A1L11 11 A1L11 C9 C9 C 0 1 Y N N N N N -18.145 15.164 39.826 4.416 -1.031 0.437 C9 A1L11 12 A1L11 C10 C10 C 0 1 Y N N N N N -24.364 11.108 34.791 -6.243 -0.838 -1.879 C10 A1L11 13 A1L11 C11 C11 C 0 1 Y N N N N N -19.093 12.913 38.512 1.767 -1.661 0.928 C11 A1L11 14 A1L11 C12 C12 C 0 1 N N N N N N -17.092 16.180 41.768 6.143 -0.729 -1.168 C12 A1L11 15 A1L11 C13 C13 C 0 1 Y N N N N N -22.670 12.789 35.101 -5.047 -1.484 0.093 C13 A1L11 16 A1L11 C14 C14 C 0 1 Y N N N N N -22.363 11.067 33.447 -5.259 0.834 -0.473 C14 A1L11 17 A1L11 C15 C15 C 0 1 Y N N N N N -17.290 14.100 39.570 3.934 -1.042 1.738 C15 A1L11 18 A1L11 N N3 N 0 1 N N N N N N -19.478 11.940 34.199 -2.568 0.263 1.260 N A1L11 19 A1L11 C C16 C 0 1 N N N N N N -19.299 11.466 35.428 -1.811 -0.846 1.383 C A1L11 20 A1L11 O O2 O 0 1 N N N N N N -18.537 10.535 35.629 -2.327 -1.903 1.688 O A1L11 21 A1L11 C16 C17 C 0 1 Y N N N N N -19.474 15.105 39.422 3.566 -1.331 -0.618 C16 A1L11 22 A1L11 C17 C18 C 0 1 Y N N N N N -23.595 10.522 33.790 -5.987 0.494 -1.597 C17 A1L11 23 A1L11 C18 C19 C 0 1 Y N N N N N -23.901 12.243 35.446 -5.774 -1.826 -1.031 C18 A1L11 24 A1L11 C19 C20 C 0 1 Y N N N N N -17.763 12.972 38.911 2.610 -1.357 1.980 C19 A1L11 25 A1L11 C20 C21 C 0 1 Y N N N N N -19.949 13.979 38.762 2.243 -1.645 -0.370 C20 A1L11 26 A1L11 C21 C22 C 0 1 N N N N N N -15.856 11.764 29.940 1.159 4.154 -0.453 C21 A1L11 27 A1L11 C22 C23 C 0 1 N N N N N N -18.162 15.852 42.803 7.626 -0.359 -1.240 C22 A1L11 28 A1L11 C23 C24 C 0 1 N N N N N N -19.374 16.763 42.653 8.114 -0.489 -2.684 C23 A1L11 29 A1L11 C24 C25 C 0 1 N N N N N N -17.586 15.951 44.209 7.815 1.083 -0.765 C24 A1L11 30 A1L11 F F1 F 0 1 N N N N N N -25.555 10.577 35.124 -6.955 -1.171 -2.978 F A1L11 31 A1L11 H1 H1 H 0 1 N N N N N N -18.012 10.619 33.409 -2.742 2.267 0.663 H1 A1L11 32 A1L11 H22 H2 H 0 1 N N N N N N -20.493 12.912 32.641 -4.314 1.196 1.953 H22 A1L11 33 A1L11 H21 H3 H 0 1 N N N N N N -20.461 13.794 34.206 -4.159 -0.525 2.376 H21 A1L11 34 A1L11 H32 H4 H 0 1 N N N N N N -17.931 13.651 32.903 -0.512 0.489 -0.428 H32 A1L11 35 A1L11 H31 H5 H 0 1 N N N N N N -17.017 12.801 34.194 -1.994 0.962 -1.293 H31 A1L11 36 A1L11 H42 H6 H 0 1 N N N N N N -19.910 10.795 31.768 -1.442 2.218 2.760 H42 A1L11 37 A1L11 H41 H7 H 0 1 N N N N N N -19.558 12.546 31.576 -0.185 1.233 1.973 H41 A1L11 38 A1L11 H52 H8 H 0 1 N N N N N N -17.636 10.231 30.996 -1.024 4.050 1.150 H52 A1L11 39 A1L11 H51 H9 H 0 1 N N N N N N -18.478 11.242 29.774 0.471 3.620 2.014 H51 A1L11 40 A1L11 H61 H10 H 0 1 N N N N N N -15.605 13.138 32.181 -0.069 2.392 -1.948 H61 A1L11 41 A1L11 H62 H11 H 0 1 N N N N N N -15.904 11.391 32.478 -1.335 3.342 -1.135 H62 A1L11 42 A1L11 HN1 H12 H 0 1 N N N N N N -20.657 12.713 36.257 -0.060 0.074 0.996 HN1 A1L11 43 A1L11 H81 H14 H 0 1 N N N N N N -20.504 11.311 38.314 0.238 -2.475 2.175 H81 A1L11 44 A1L11 H82 H15 H 0 1 N N N N N N -18.830 10.908 37.800 -0.034 -2.692 0.429 H82 A1L11 45 A1L11 H122 H16 H 0 0 N N N N N N -16.332 15.384 41.765 5.997 -1.724 -1.588 H122 A1L11 46 A1L11 H121 H17 H 0 0 N N N N N N -16.618 17.139 42.026 5.560 -0.005 -1.735 H121 A1L11 47 A1L11 H13 H18 H 0 1 N N N N N N -22.310 13.670 35.612 -4.681 -2.255 0.755 H13 A1L11 48 A1L11 H14 H19 H 0 1 N N N N N N -21.766 10.607 32.674 -5.059 1.872 -0.253 H14 A1L11 49 A1L11 H15 H20 H 0 1 N N N N N N -16.258 14.149 39.883 4.592 -0.806 2.561 H15 A1L11 50 A1L11 H16 H21 H 0 1 N N N N N N -20.137 15.934 39.621 3.938 -1.319 -1.631 H16 A1L11 51 A1L11 H17 H22 H 0 1 N N N N N N -23.956 9.642 33.279 -6.352 1.266 -2.258 H17 A1L11 52 A1L11 H18 H23 H 0 1 N N N N N N -24.497 12.700 36.222 -5.973 -2.865 -1.250 H18 A1L11 53 A1L11 H19 H24 H 0 1 N N N N N N -17.100 12.144 38.710 2.236 -1.370 2.993 H19 A1L11 54 A1L11 H20 H25 H 0 1 N N N N N N -20.980 13.932 38.444 1.583 -1.883 -1.190 H20 A1L11 55 A1L11 H212 H26 H 0 0 N N N N N N -15.029 12.489 29.971 1.922 4.403 0.285 H212 A1L11 56 A1L11 H211 H27 H 0 0 N N N N N N -15.493 10.779 30.270 1.637 3.916 -1.403 H211 A1L11 57 A1L11 H213 H28 H 0 0 N N N N N N -16.238 11.688 28.911 0.490 5.003 -0.585 H213 A1L11 58 A1L11 H220 H29 H 0 0 N N N N N N -18.490 14.815 42.639 8.200 -1.030 -0.601 H220 A1L11 59 A1L11 H232 H30 H 0 0 N N N N N N -20.126 16.502 43.412 7.540 0.183 -3.323 H232 A1L11 60 A1L11 H231 H31 H 0 0 N N N N N N -19.065 17.810 42.789 9.170 -0.225 -2.736 H231 A1L11 61 A1L11 H233 H32 H 0 0 N N N N N N -19.806 16.635 41.650 7.979 -1.516 -3.023 H233 A1L11 62 A1L11 H242 H33 H 0 0 N N N N N N -18.369 15.712 44.944 7.241 1.754 -1.404 H242 A1L11 63 A1L11 H243 H34 H 0 0 N N N N N N -16.754 15.240 44.315 7.468 1.176 0.264 H243 A1L11 64 A1L11 H241 H35 H 0 0 N N N N N N -17.219 16.973 44.384 8.872 1.347 -0.817 H241 A1L11 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L11 F C10 SING N N 1 A1L11 C10 C18 DOUB Y N 2 A1L11 C10 C17 SING Y N 3 A1L11 C18 C13 SING Y N 4 A1L11 C13 C7 DOUB Y N 5 A1L11 C17 C14 DOUB Y N 6 A1L11 C14 C7 SING Y N 7 A1L11 C7 C2 SING N N 8 A1L11 C2 N SING N N 9 A1L11 N C1 SING N N 10 A1L11 N C SING N N 11 A1L11 C1 C4 SING N N 12 A1L11 C1 C3 SING N N 13 A1L11 C4 C5 SING N N 14 A1L11 C5 N2 SING N N 15 A1L11 C3 C6 SING N N 16 A1L11 C6 N2 SING N N 17 A1L11 N2 C21 SING N N 18 A1L11 C O DOUB N N 19 A1L11 C N1 SING N N 20 A1L11 N1 C8 SING N N 21 A1L11 C8 C11 SING N N 22 A1L11 C11 C19 SING Y N 23 A1L11 C11 C20 DOUB Y N 24 A1L11 C19 C15 DOUB Y N 25 A1L11 C15 C9 SING Y N 26 A1L11 C20 C16 SING Y N 27 A1L11 C16 C9 DOUB Y N 28 A1L11 C9 O1 SING N N 29 A1L11 O1 C12 SING N N 30 A1L11 C12 C22 SING N N 31 A1L11 C22 C24 SING N N 32 A1L11 C22 C23 SING N N 33 A1L11 C1 H1 SING N N 34 A1L11 C2 H22 SING N N 35 A1L11 C2 H21 SING N N 36 A1L11 C3 H32 SING N N 37 A1L11 C3 H31 SING N N 38 A1L11 C4 H42 SING N N 39 A1L11 C4 H41 SING N N 40 A1L11 C5 H52 SING N N 41 A1L11 C5 H51 SING N N 42 A1L11 C6 H61 SING N N 43 A1L11 C6 H62 SING N N 44 A1L11 N1 HN1 SING N N 45 A1L11 C8 H81 SING N N 46 A1L11 C8 H82 SING N N 47 A1L11 C12 H122 SING N N 48 A1L11 C12 H121 SING N N 49 A1L11 C13 H13 SING N N 50 A1L11 C14 H14 SING N N 51 A1L11 C15 H15 SING N N 52 A1L11 C16 H16 SING N N 53 A1L11 C17 H17 SING N N 54 A1L11 C18 H18 SING N N 55 A1L11 C19 H19 SING N N 56 A1L11 C20 H20 SING N N 57 A1L11 C21 H212 SING N N 58 A1L11 C21 H211 SING N N 59 A1L11 C21 H213 SING N N 60 A1L11 C22 H220 SING N N 61 A1L11 C23 H232 SING N N 62 A1L11 C23 H231 SING N N 63 A1L11 C23 H233 SING N N 64 A1L11 C24 H242 SING N N 65 A1L11 C24 H243 SING N N 66 A1L11 C24 H241 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L11 InChI InChI 1.06 "InChI=1S/C25H34FN3O2/c1-19(2)18-31-24-10-6-20(7-11-24)16-27-25(30)29(23-12-14-28(3)15-13-23)17-21-4-8-22(26)9-5-21/h4-11,19,23H,12-18H2,1-3H3,(H,27,30)" A1L11 InChIKey InChI 1.06 RKEWSXXUOLRFBX-UHFFFAOYSA-N A1L11 SMILES_CANONICAL CACTVS 3.385 "CC(C)COc1ccc(CNC(=O)N(Cc2ccc(F)cc2)C3CCN(C)CC3)cc1" A1L11 SMILES CACTVS 3.385 "CC(C)COc1ccc(CNC(=O)N(Cc2ccc(F)cc2)C3CCN(C)CC3)cc1" A1L11 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)COc1ccc(cc1)CNC(=O)N(Cc2ccc(cc2)F)C3CCN(CC3)C" A1L11 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)COc1ccc(cc1)CNC(=O)N(Cc2ccc(cc2)F)C3CCN(CC3)C" # _pdbx_chem_comp_identifier.comp_id A1L11 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(4-fluorophenyl)methyl]-1-(1-methylpiperidin-4-yl)-3-[[4-(2-methylpropoxy)phenyl]methyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L11 "Create component" 2024-05-24 PDBJ A1L11 "Initial release" 2024-08-28 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1L11 _pdbx_chem_comp_synonyms.name "1-[(4-fluorophenyl)methyl]-1-(1-methylpiperidin-4-yl)-3-[[4-(2-methylpropoxy)phenyl]methyl]urea" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #