data_A1L1G # _chem_comp.id A1L1G _chem_comp.name "(1~{R},3~{S})-6-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{Z},17~{E})-16-(hydroxymethyl)-3,7,12-trimethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]-1,5,5-trimethyl-cyclohexane-1,3-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H56 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-03 _chem_comp.pdbx_modified_date 2025-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 616.870 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L1G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L1G C1 C1 C 0 1 N N N N N N ? ? ? 11.536 0.057 -0.043 C1 A1L1G 1 A1L1G C5 C2 C 0 1 N N N N N N ? ? ? 12.228 0.871 -2.289 C5 A1L1G 2 A1L1G C4 C3 C 0 1 N N N N N N ? ? ? 13.661 0.589 1.103 C4 A1L1G 3 A1L1G C3 C4 C 0 1 N N N N N N ? ? ? 13.663 -0.741 -1.018 C3 A1L1G 4 A1L1G C2 C5 C 0 1 N N N N N N ? ? ? 9.222 -0.973 0.601 C2 A1L1G 5 A1L1G C10 C6 C 0 1 N N N N N N ? ? ? 11.477 1.129 2.200 C10 A1L1G 6 A1L1G C11 C7 C 0 1 N N R N N N ? ? ? 12.221 1.055 0.864 C11 A1L1G 7 A1L1G C12 C8 C 0 1 N N N N N N ? ? ? 11.482 -1.496 -1.985 C12 A1L1G 8 A1L1G C14 C9 C 0 1 N N N N N N ? ? ? -9.934 -0.294 0.229 C14 A1L1G 9 A1L1G C17 C10 C 0 1 N N N N N N ? ? ? -11.714 -2.096 -1.172 C17 A1L1G 10 A1L1G C18 C11 C 0 1 N N N N N N ? ? ? -10.910 1.725 1.694 C18 A1L1G 11 A1L1G C19 C12 C 0 1 N N N N N N ? ? ? -11.581 2.762 -0.476 C19 A1L1G 12 A1L1G C20 C13 C 0 1 N N R N N N ? ? ? -12.161 -0.638 -1.046 C20 A1L1G 13 A1L1G C21 C14 C 0 1 N N N N N N ? ? ? -13.662 -0.439 -0.906 C21 A1L1G 14 A1L1G C22 C15 C 0 1 N N S N N N ? ? ? -13.976 1.001 -0.502 C22 A1L1G 15 A1L1G C23 C16 C 0 1 N N N N N N ? ? ? -13.198 1.332 0.777 C23 A1L1G 16 A1L1G C24 C17 C 0 1 N N N N N N ? ? ? -11.725 1.526 0.414 C24 A1L1G 17 A1L1G C25 C18 C 0 1 N N S N N N ? ? ? -11.211 0.296 -0.312 C25 A1L1G 18 A1L1G C26 C19 C 0 1 N N N N N N ? ? ? -7.608 -1.498 1.331 C26 A1L1G 19 A1L1G C27 C20 C 0 1 N N N N N N ? ? ? -2.823 -1.901 1.158 C27 A1L1G 20 A1L1G C28 C21 C 0 1 N N N N N N ? ? ? 3.339 1.035 -0.679 C28 A1L1G 21 A1L1G C29 C22 C 0 1 N N N N N N ? ? ? -8.752 0.172 -0.189 C29 A1L1G 22 A1L1G C30 C23 C 0 1 N N N N N N ? ? ? -7.553 -0.383 0.319 C30 A1L1G 23 A1L1G C31 C24 C 0 1 N N N N N N ? ? ? -6.348 0.092 -0.107 C31 A1L1G 24 A1L1G C32 C25 C 0 1 N N N N N N ? ? ? -5.164 -0.541 0.295 C32 A1L1G 25 A1L1G C33 C26 C 0 1 N N N N N N ? ? ? -3.941 0.002 -0.045 C33 A1L1G 26 A1L1G C34 C27 C 0 1 N N N N N N ? ? ? -2.762 -0.627 0.355 C34 A1L1G 27 A1L1G C35 C28 C 0 1 N N N N N N ? ? ? -1.535 -0.082 0.014 C35 A1L1G 28 A1L1G C36 C29 C 0 1 N N N N N N ? ? ? -0.360 -0.710 0.412 C36 A1L1G 29 A1L1G C37 C30 C 0 1 N N N N N N ? ? ? 0.871 -0.162 0.070 C37 A1L1G 30 A1L1G C38 C31 C 0 1 N N N N N N ? ? ? 2.042 -0.788 0.467 C38 A1L1G 31 A1L1G C39 C32 C 0 1 N N N N N N ? ? ? 3.277 -0.239 0.124 C39 A1L1G 32 A1L1G C40 C33 C 0 1 N N N N N N ? ? ? 4.444 -0.862 0.520 C40 A1L1G 33 A1L1G C41 C34 C 0 1 N N N N N N ? ? ? 5.685 -0.310 0.175 C41 A1L1G 34 A1L1G C42 C35 C 0 1 N N N N N N ? ? ? 6.837 -0.926 0.565 C42 A1L1G 35 A1L1G C43 C36 C 0 1 N N N N N N ? ? ? 8.152 0.905 -0.586 C43 A1L1G 36 A1L1G C44 C37 C 0 1 N N N N N N ? ? ? 8.090 -0.368 0.217 C44 A1L1G 37 A1L1G C45 C38 C 0 1 N N S N N N ? ? ? 10.379 -0.458 0.279 C45 A1L1G 38 A1L1G C6 C39 C 0 1 N N N N N N ? ? ? 12.223 -0.326 -1.336 C6 A1L1G 39 A1L1G C8 C40 C 0 1 N N S N N N ? ? ? 14.357 0.381 -0.244 C8 A1L1G 40 A1L1G O13 O1 O 0 1 N N N N N N ? ? ? -8.226 -2.645 0.743 O13 A1L1G 41 A1L1G O15 O2 O 0 1 N N N N N N ? ? ? -11.376 0.323 -1.739 O15 A1L1G 42 A1L1G O16 O3 O 0 1 N N N N N N ? ? ? -15.378 1.135 -0.258 O16 A1L1G 43 A1L1G O7 O4 O 0 1 N N N N N N ? ? ? 15.724 0.030 -0.022 O7 A1L1G 44 A1L1G O9 O5 O 0 1 N N N N N N ? ? ? 12.225 2.343 0.245 O9 A1L1G 45 A1L1G H1 H1 H 0 1 N N N N N N ? ? ? 12.762 1.701 -1.827 H1 A1L1G 46 A1L1G H2 H2 H 0 1 N N N N N N ? ? ? 12.723 0.593 -3.219 H2 A1L1G 47 A1L1G H3 H3 H 0 1 N N N N N N ? ? ? 11.201 1.172 -2.499 H3 A1L1G 48 A1L1G H4 H4 H 0 1 N N N N N N ? ? ? 14.198 1.345 1.676 H4 A1L1G 49 A1L1G H5 H5 H 0 1 N N N N N N ? ? ? 13.653 -0.349 1.657 H5 A1L1G 50 A1L1G H6 H6 H 0 1 N N N N N N ? ? ? 13.655 -1.648 -0.414 H6 A1L1G 51 A1L1G H7 H7 H 0 1 N N N N N N ? ? ? 14.201 -0.928 -1.947 H7 A1L1G 52 A1L1G H8 H8 H 0 1 N N N N N N ? ? ? 9.178 -1.885 1.176 H8 A1L1G 53 A1L1G H9 H9 H 0 1 N N N N N N ? ? ? 11.482 0.147 2.673 H9 A1L1G 54 A1L1G H10 H10 H 0 1 N N N N N N ? ? ? 11.973 1.849 2.852 H10 A1L1G 55 A1L1G H11 H11 H 0 1 N N N N N N ? ? ? 10.449 1.444 2.026 H11 A1L1G 56 A1L1G H12 H12 H 0 1 N N N N N N ? ? ? 10.453 -1.203 -2.194 H12 A1L1G 57 A1L1G H13 H13 H 0 1 N N N N N N ? ? ? 11.978 -1.770 -2.915 H13 A1L1G 58 A1L1G H14 H14 H 0 1 N N N N N N ? ? ? 11.486 -2.349 -1.306 H14 A1L1G 59 A1L1G H15 H15 H 0 1 N N N N N N ? ? ? -9.974 -1.093 0.955 H15 A1L1G 60 A1L1G H16 H16 H 0 1 N N N N N N ? ? ? -10.746 -2.138 -1.671 H16 A1L1G 61 A1L1G H17 H17 H 0 1 N N N N N N ? ? ? -11.630 -2.537 -0.179 H17 A1L1G 62 A1L1G H18 H18 H 0 1 N N N N N N ? ? ? -12.448 -2.652 -1.755 H18 A1L1G 63 A1L1G H19 H19 H 0 1 N N N N N N ? ? ? -11.016 0.847 2.332 H19 A1L1G 64 A1L1G H20 H20 H 0 1 N N N N N N ? ? ? -9.860 1.863 1.438 H20 A1L1G 65 A1L1G H21 H21 H 0 1 N N N N N N ? ? ? -11.274 2.605 2.224 H21 A1L1G 66 A1L1G H22 H22 H 0 1 N N N N N N ? ? ? -11.943 3.639 0.059 H22 A1L1G 67 A1L1G H23 H23 H 0 1 N N N N N N ? ? ? -10.532 2.902 -0.735 H23 A1L1G 68 A1L1G H24 H24 H 0 1 N N N N N N ? ? ? -12.165 2.624 -1.386 H24 A1L1G 69 A1L1G H25 H25 H 0 1 N N N N N N ? ? ? -14.144 -0.659 -1.859 H25 A1L1G 70 A1L1G H26 H26 H 0 1 N N N N N N ? ? ? -14.045 -1.119 -0.145 H26 A1L1G 71 A1L1G H27 H27 H 0 1 N N N N N N ? ? ? -13.675 1.679 -1.300 H27 A1L1G 72 A1L1G H28 H28 H 0 1 N N N N N N ? ? ? -13.590 2.248 1.217 H28 A1L1G 73 A1L1G H29 H29 H 0 1 N N N N N N ? ? ? -13.295 0.511 1.487 H29 A1L1G 74 A1L1G H30 H30 H 0 1 N N N N N N ? ? ? -6.596 -1.752 1.647 H30 A1L1G 75 A1L1G H31 H31 H 0 1 N N N N N N ? ? ? -8.188 -1.175 2.196 H31 A1L1G 76 A1L1G H32 H32 H 0 1 N N N N N N ? ? ? -2.836 -2.756 0.482 H32 A1L1G 77 A1L1G H33 H33 H 0 1 N N N N N N ? ? ? -1.950 -1.964 1.807 H33 A1L1G 78 A1L1G H34 H34 H 0 1 N N N N N N ? ? ? -3.728 -1.905 1.765 H34 A1L1G 79 A1L1G H35 H35 H 0 1 N N N N N N ? ? ? 3.351 1.890 -0.003 H35 A1L1G 80 A1L1G H36 H36 H 0 1 N N N N N N ? ? ? 4.244 1.038 -1.287 H36 A1L1G 81 A1L1G H37 H37 H 0 1 N N N N N N ? ? ? 2.465 1.098 -1.328 H37 A1L1G 82 A1L1G H38 H38 H 0 1 N N N N N N ? ? ? -8.712 0.971 -0.915 H38 A1L1G 83 A1L1G H39 H39 H 0 1 N N N N N N ? ? ? -6.307 0.955 -0.754 H39 A1L1G 84 A1L1G H40 H40 H 0 1 N N N N N N ? ? ? -5.208 -1.454 0.870 H40 A1L1G 85 A1L1G H41 H41 H 0 1 N N N N N N ? ? ? -3.898 0.915 -0.621 H41 A1L1G 86 A1L1G H42 H42 H 0 1 N N N N N N ? ? ? -1.491 0.831 -0.562 H42 A1L1G 87 A1L1G H43 H43 H 0 1 N N N N N N ? ? ? -0.404 -1.622 0.988 H43 A1L1G 88 A1L1G H44 H44 H 0 1 N N N N N N ? ? ? 0.915 0.751 -0.506 H44 A1L1G 89 A1L1G H45 H45 H 0 1 N N N N N N ? ? ? 1.999 -1.701 1.043 H45 A1L1G 90 A1L1G H46 H46 H 0 1 N N N N N N ? ? ? 4.401 -1.775 1.095 H46 A1L1G 91 A1L1G H47 H47 H 0 1 N N N N N N ? ? ? 5.729 0.603 -0.401 H47 A1L1G 92 A1L1G H48 H48 H 0 1 N N N N N N ? ? ? 6.793 -1.839 1.141 H48 A1L1G 93 A1L1G H49 H49 H 0 1 N N N N N N ? ? ? 8.164 1.761 0.090 H49 A1L1G 94 A1L1G H50 H50 H 0 1 N N N N N N ? ? ? 9.057 0.909 -1.194 H50 A1L1G 95 A1L1G H51 H51 H 0 1 N N N N N N ? ? ? 7.278 0.968 -1.235 H51 A1L1G 96 A1L1G H52 H52 H 0 1 N N N N N N ? ? ? 14.310 1.303 -0.822 H52 A1L1G 97 A1L1G H53 H53 H 0 1 N N N N N N ? ? ? -8.295 -3.403 1.340 H53 A1L1G 98 A1L1G H54 H54 H 0 1 N N N N N N ? ? ? -15.932 0.928 -1.023 H54 A1L1G 99 A1L1G H55 H55 H 0 1 N N N N N N ? ? ? 16.229 0.700 0.460 H55 A1L1G 100 A1L1G H56 H56 H 0 1 N N N N N N ? ? ? 12.650 3.032 0.774 H56 A1L1G 101 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L1G O16 C22 SING N N 1 A1L1G C21 C22 SING N N 2 A1L1G C21 C20 SING N N 3 A1L1G C22 C23 SING N N 4 A1L1G C17 C20 SING N N 5 A1L1G C20 O15 SING N N 6 A1L1G C20 C25 SING N N 7 A1L1G C23 C24 SING N N 8 A1L1G O15 C25 SING N N 9 A1L1G C25 C24 SING N N 10 A1L1G C25 C14 SING N N 11 A1L1G C24 C19 SING N N 12 A1L1G C24 C18 SING N N 13 A1L1G C14 C29 DOUB N E 14 A1L1G C29 C30 SING N N 15 A1L1G C30 C31 DOUB N Z 16 A1L1G C30 C26 SING N N 17 A1L1G O13 C26 SING N N 18 A1L1G C31 C32 SING N N 19 A1L1G C32 C33 DOUB N E 20 A1L1G C33 C34 SING N N 21 A1L1G C34 C35 DOUB N E 22 A1L1G C34 C27 SING N N 23 A1L1G C35 C36 SING N N 24 A1L1G C28 C39 SING N N 25 A1L1G C37 C36 DOUB N E 26 A1L1G C37 C38 SING N N 27 A1L1G C38 C39 DOUB N E 28 A1L1G C39 C40 SING N N 29 A1L1G C40 C41 DOUB N E 30 A1L1G C41 C42 SING N N 31 A1L1G C43 C44 SING N N 32 A1L1G C42 C44 DOUB N E 33 A1L1G C44 C2 SING N N 34 A1L1G C2 C45 DOUB N N 35 A1L1G C45 C1 DOUB N N 36 A1L1G C10 C11 SING N N 37 A1L1G C1 C11 SING N N 38 A1L1G C1 C6 SING N N 39 A1L1G C12 C6 SING N N 40 A1L1G C11 O9 SING N N 41 A1L1G C11 C4 SING N N 42 A1L1G C6 C5 SING N N 43 A1L1G C6 C3 SING N N 44 A1L1G C4 C8 SING N N 45 A1L1G C3 C8 SING N N 46 A1L1G C8 O7 SING N N 47 A1L1G C5 H1 SING N N 48 A1L1G C5 H2 SING N N 49 A1L1G C5 H3 SING N N 50 A1L1G C4 H4 SING N N 51 A1L1G C4 H5 SING N N 52 A1L1G C3 H6 SING N N 53 A1L1G C3 H7 SING N N 54 A1L1G C2 H8 SING N N 55 A1L1G C10 H9 SING N N 56 A1L1G C10 H10 SING N N 57 A1L1G C10 H11 SING N N 58 A1L1G C12 H12 SING N N 59 A1L1G C12 H13 SING N N 60 A1L1G C12 H14 SING N N 61 A1L1G C14 H15 SING N N 62 A1L1G C17 H16 SING N N 63 A1L1G C17 H17 SING N N 64 A1L1G C17 H18 SING N N 65 A1L1G C18 H19 SING N N 66 A1L1G C18 H20 SING N N 67 A1L1G C18 H21 SING N N 68 A1L1G C19 H22 SING N N 69 A1L1G C19 H23 SING N N 70 A1L1G C19 H24 SING N N 71 A1L1G C21 H25 SING N N 72 A1L1G C21 H26 SING N N 73 A1L1G C22 H27 SING N N 74 A1L1G C23 H28 SING N N 75 A1L1G C23 H29 SING N N 76 A1L1G C26 H30 SING N N 77 A1L1G C26 H31 SING N N 78 A1L1G C27 H32 SING N N 79 A1L1G C27 H33 SING N N 80 A1L1G C27 H34 SING N N 81 A1L1G C28 H35 SING N N 82 A1L1G C28 H36 SING N N 83 A1L1G C28 H37 SING N N 84 A1L1G C29 H38 SING N N 85 A1L1G C31 H39 SING N N 86 A1L1G C32 H40 SING N N 87 A1L1G C33 H41 SING N N 88 A1L1G C35 H42 SING N N 89 A1L1G C36 H43 SING N N 90 A1L1G C37 H44 SING N N 91 A1L1G C38 H45 SING N N 92 A1L1G C40 H46 SING N N 93 A1L1G C41 H47 SING N N 94 A1L1G C42 H48 SING N N 95 A1L1G C43 H49 SING N N 96 A1L1G C43 H50 SING N N 97 A1L1G C43 H51 SING N N 98 A1L1G C8 H52 SING N N 99 A1L1G O13 H53 SING N N 100 A1L1G O16 H54 SING N N 101 A1L1G O7 H55 SING N N 102 A1L1G O9 H56 SING N N 103 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L1G InChI InChI 1.06 "InChI=1S/C40H56O5/c1-29(16-12-17-31(3)20-21-35-36(4,5)24-33(42)26-38(35,8)44)14-10-11-15-30(2)18-13-19-32(28-41)22-23-40-37(6,7)25-34(43)27-39(40,9)45-40/h10-20,22-23,33-34,41-44H,24-28H2,1-9H3/b11-10+,16-12+,18-13+,23-22+,29-14+,30-15+,31-17+,32-19-/t21-,33+,34+,38-,39-,40+/m1/s1" A1L1G InChIKey InChI 1.06 OWWSPDNLRSCPIS-XZHZJERWSA-N A1L1G SMILES_CANONICAL CACTVS 3.385 "CC(=C/C=C/C=C(C)/C=C/C=C(CO)/C=C/[C@@]12O[C@]1(C)C[C@@H](O)CC2(C)C)\C=C\C=C(C)\[CH]=[C@@]=[C]3C(C)(C)C[C@H](O)C[C@@]3(C)O" A1L1G SMILES CACTVS 3.385 "CC(=CC=CC=C(C)C=CC=C(CO)C=C[C]12O[C]1(C)C[CH](O)CC2(C)C)C=CC=C(C)[CH]=[C]=[C]3C(C)(C)C[CH](O)C[C]3(C)O" A1L1G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C(=C\C=C\C=C(/C)\C=C\C=C(/CO)\C=C\[C@]12[C@](O1)(C[C@H](CC2(C)C)O)C)/C=C/C=C(\C)/C=C=C3[C@](C[C@H](CC3(C)C)O)(C)O" A1L1G SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CC=CC=C(C)C=CC=C(CO)C=CC12C(CC(CC1(O2)C)O)(C)C)C=CC=C(C)C=C=C3C(CC(CC3(C)O)O)(C)C" # _pdbx_chem_comp_identifier.comp_id A1L1G _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S})-6-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{Z},17~{E})-16-(hydroxymethyl)-3,7,12-trimethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]-1,5,5-trimethyl-cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L1G "Create component" 2024-05-03 PDBJ A1L1G "Modify coordinates" 2025-08-18 RCSB A1L1G "Initial release" 2025-08-27 RCSB #