data_A1L1S # _chem_comp.id A1L1S _chem_comp.name "~{N}-(7-methyl-1,8-naphthyridin-2-yl)-3-[[3-[(7-methyl-1,8-naphthyridin-2-yl)amino]-3-oxidanylidene-propyl]amino]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-05-09 _chem_comp.pdbx_modified_date 2025-04-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 443.501 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L1S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ZD2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L1S O02 O1 O 0 1 N N N N N N -3.817 -4.130 9.477 3.595 0.336 -0.147 O02 A1L1S 1 A1L1S C15 C1 C 0 1 N N N N N N -3.410 -4.815 8.571 3.690 1.544 -0.089 C15 A1L1S 2 A1L1S N05 N1 N 0 1 N N N N N N -2.675 -4.330 7.507 4.906 2.124 -0.065 N05 A1L1S 3 A1L1S C16 C2 C 0 1 Y N N N N N -2.474 -3.018 7.082 6.050 1.336 0.000 C16 A1L1S 4 A1L1S C17 C3 C 0 1 Y N N N N N -3.067 -1.933 7.715 7.300 1.957 0.132 C17 A1L1S 5 A1L1S C18 C4 C 0 1 Y N N N N N -2.918 -0.677 7.156 8.429 1.196 0.198 C18 A1L1S 6 A1L1S C19 C5 C 0 1 Y N N N N N -2.280 -0.571 5.928 8.295 -0.204 0.129 C19 A1L1S 7 A1L1S C21 C6 C 0 1 Y N N N N N -2.334 0.643 5.250 9.414 -1.051 0.190 C21 A1L1S 8 A1L1S C22 C7 C 0 1 Y N N N N N -1.506 0.811 4.148 9.207 -2.401 0.116 C22 A1L1S 9 A1L1S C23 C8 C 0 1 Y N N N N N -0.794 -0.289 3.682 7.913 -2.896 -0.015 C23 A1L1S 10 A1L1S C24 C9 C 0 1 N N N N N N 0.108 -0.136 2.474 7.704 -4.386 -0.094 C24 A1L1S 11 A1L1S N07 N2 N 0 1 Y N N N N N -0.855 -1.503 4.273 6.871 -2.101 -0.070 N07 A1L1S 12 A1L1S C20 C10 C 0 1 Y N N N N N -1.612 -1.671 5.381 7.004 -0.772 -0.004 C20 A1L1S 13 A1L1S N06 N3 N 0 1 Y N N N N N -1.738 -2.888 5.956 5.932 0.026 -0.058 N06 A1L1S 14 A1L1S C14 C11 C 0 1 N N N N N N -3.874 -6.261 8.497 2.448 2.396 -0.049 C14 A1L1S 15 A1L1S C13 C12 C 0 1 N N N N N N -5.388 -6.355 8.767 1.210 1.497 -0.094 C13 A1L1S 16 A1L1S N04 N4 N 0 1 N N N N N N -6.224 -5.710 7.662 -0.000 2.329 -0.056 N04 A1L1S 17 A1L1S C12 C13 C 0 1 N N N N N N -7.267 -6.685 7.122 -1.211 1.498 -0.097 C12 A1L1S 18 A1L1S C11 C14 C 0 1 N N N N N N -7.904 -6.197 5.806 -2.448 2.397 -0.056 C11 A1L1S 19 A1L1S C10 C15 C 0 1 N N N N N N -7.471 -7.076 4.640 -3.690 1.544 -0.098 C10 A1L1S 20 A1L1S O01 O2 O 0 1 N N N N N N -7.503 -8.269 4.824 -3.595 0.336 -0.156 O01 A1L1S 21 A1L1S N03 N5 N 0 1 N N N N N N -6.995 -6.491 3.482 -4.907 2.124 -0.072 N03 A1L1S 22 A1L1S C09 C16 C 0 1 Y N N N N N -6.333 -7.045 2.383 -6.050 1.336 -0.004 C09 A1L1S 23 A1L1S C08 C17 C 0 1 Y N N N N N -6.009 -8.391 2.305 -7.300 1.957 0.131 C08 A1L1S 24 A1L1S C07 C18 C 0 1 Y N N N N N -5.248 -8.843 1.237 -8.429 1.196 0.198 C07 A1L1S 25 A1L1S C05 C19 C 0 1 Y N N N N N -4.886 -7.936 0.251 -8.295 -0.204 0.128 C05 A1L1S 26 A1L1S C06 C20 C 0 1 Y N N N N N -5.241 -6.590 0.364 -7.004 -0.772 -0.009 C06 A1L1S 27 A1L1S N02 N6 N 0 1 Y N N N N N -5.959 -6.164 1.429 -5.933 0.026 -0.074 N02 A1L1S 28 A1L1S C04 C21 C 0 1 Y N N N N N -4.150 -8.394 -0.835 -9.414 -1.051 0.196 C04 A1L1S 29 A1L1S C03 C22 C 0 1 Y N N N N N -3.749 -7.480 -1.799 -9.206 -2.401 0.127 C03 A1L1S 30 A1L1S C02 C23 C 0 1 Y N N N N N -4.125 -6.153 -1.646 -7.913 -2.897 -0.007 C02 A1L1S 31 A1L1S N01 N7 N 0 1 Y N N N N N -4.854 -5.719 -0.594 -6.872 -2.101 -0.075 N01 A1L1S 32 A1L1S C01 C24 C 0 1 N N N N N N -3.746 -5.143 -2.710 -7.703 -4.387 -0.081 C01 A1L1S 33 A1L1S H15 H1 H 0 1 N N N N N N -2.216 -5.028 6.957 4.983 3.090 -0.093 H15 A1L1S 34 A1L1S H16 H2 H 0 1 N N N N N N -3.633 -2.068 8.625 7.368 3.033 0.182 H16 A1L1S 35 A1L1S H17 H3 H 0 1 N N N N N N -3.289 0.201 7.663 9.402 1.656 0.300 H17 A1L1S 36 A1L1S H18 H4 H 0 1 N N N N N N -3.000 1.431 5.571 10.411 -0.647 0.291 H18 A1L1S 37 A1L1S H19 H5 H 0 1 N N N N N N -1.417 1.773 3.664 10.045 -3.080 0.160 H19 A1L1S 38 A1L1S H43 H6 H 0 1 N N N N N N 0.599 -1.096 2.258 7.566 -4.788 0.910 H43 A1L1S 39 A1L1S H41 H7 H 0 1 N N N N N N -0.492 0.172 1.605 6.819 -4.597 -0.695 H41 A1L1S 40 A1L1S H42 H8 H 0 1 N N N N N N 0.872 0.628 2.681 8.575 -4.852 -0.555 H42 A1L1S 41 A1L1S H14 H9 H 0 1 N N N N N N -3.659 -6.659 7.494 2.438 2.982 0.870 H14 A1L1S 42 A1L1S H13 H10 H 0 1 N N N N N N -3.334 -6.854 9.250 2.441 3.068 -0.908 H13 A1L1S 43 A1L1S H12 H11 H 0 1 N N N N N N -5.608 -5.847 9.717 1.220 0.912 -1.013 H12 A1L1S 44 A1L1S H11 H12 H 0 1 N N N N N N -5.667 -7.416 8.845 1.218 0.826 0.765 H11 A1L1S 45 A1L1S H20 H13 H 0 1 N N N N N N -5.620 -5.432 6.915 -0.001 2.929 0.755 H20 A1L1S 46 A1L1S H09 H15 H 0 1 N N N N N N -8.060 -6.806 7.875 -1.218 0.912 -1.016 H09 A1L1S 47 A1L1S H10 H16 H 0 1 N N N N N N -6.782 -7.656 6.941 -1.220 0.826 0.762 H10 A1L1S 48 A1L1S H07 H17 H 0 1 N N N N N N -7.588 -5.161 5.614 -2.441 2.983 0.863 H07 A1L1S 49 A1L1S H08 H18 H 0 1 N N N N N N -8.999 -6.235 5.899 -2.439 3.068 -0.915 H08 A1L1S 50 A1L1S H06 H19 H 0 1 N N N N N N -7.150 -5.505 3.420 -4.984 3.090 -0.101 H06 A1L1S 51 A1L1S H05 H20 H 0 1 N N N N N N -6.345 -9.079 3.067 -7.368 3.033 0.182 H05 A1L1S 52 A1L1S H04 H21 H 0 1 N N N N N N -4.944 -9.877 1.174 -9.401 1.655 0.302 H04 A1L1S 53 A1L1S H03 H22 H 0 1 N N N N N N -3.895 -9.440 -0.927 -10.410 -0.647 0.301 H03 A1L1S 54 A1L1S H02 H23 H 0 1 N N N N N N -3.159 -7.794 -2.647 -10.043 -3.081 0.181 H02 A1L1S 55 A1L1S H31 H24 H 0 1 N N N N N N -4.150 -4.156 -2.440 -7.743 -4.708 -1.122 H31 A1L1S 56 A1L1S H32 H25 H 0 1 N N N N N N -2.650 -5.083 -2.785 -6.728 -4.638 0.339 H32 A1L1S 57 A1L1S H33 H26 H 0 1 N N N N N N -4.163 -5.457 -3.678 -8.484 -4.893 0.486 H33 A1L1S 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L1S C01 C02 SING N N 1 A1L1S C03 C02 DOUB Y N 2 A1L1S C03 C04 SING Y N 3 A1L1S C02 N01 SING Y N 4 A1L1S C04 C05 DOUB Y N 5 A1L1S N01 C06 DOUB Y N 6 A1L1S C05 C06 SING Y N 7 A1L1S C05 C07 SING Y N 8 A1L1S C06 N02 SING Y N 9 A1L1S C07 C08 DOUB Y N 10 A1L1S N02 C09 DOUB Y N 11 A1L1S C08 C09 SING Y N 12 A1L1S C09 N03 SING N N 13 A1L1S C24 C23 SING N N 14 A1L1S N03 C10 SING N N 15 A1L1S C23 C22 SING Y N 16 A1L1S C23 N07 DOUB Y N 17 A1L1S C22 C21 DOUB Y N 18 A1L1S N07 C20 SING Y N 19 A1L1S C10 O01 DOUB N N 20 A1L1S C10 C11 SING N N 21 A1L1S C21 C19 SING Y N 22 A1L1S C20 C19 DOUB Y N 23 A1L1S C20 N06 SING Y N 24 A1L1S C11 C12 SING N N 25 A1L1S C19 C18 SING Y N 26 A1L1S N06 C16 DOUB Y N 27 A1L1S C16 N05 SING N N 28 A1L1S C16 C17 SING Y N 29 A1L1S C12 N04 SING N N 30 A1L1S C18 C17 DOUB Y N 31 A1L1S N05 C15 SING N N 32 A1L1S N04 C13 SING N N 33 A1L1S C14 C15 SING N N 34 A1L1S C14 C13 SING N N 35 A1L1S C15 O02 DOUB N N 36 A1L1S N05 H15 SING N N 37 A1L1S C17 H16 SING N N 38 A1L1S C18 H17 SING N N 39 A1L1S C21 H18 SING N N 40 A1L1S C22 H19 SING N N 41 A1L1S C24 H43 SING N N 42 A1L1S C24 H41 SING N N 43 A1L1S C24 H42 SING N N 44 A1L1S C14 H14 SING N N 45 A1L1S C14 H13 SING N N 46 A1L1S C13 H12 SING N N 47 A1L1S C13 H11 SING N N 48 A1L1S N04 H20 SING N N 49 A1L1S C12 H09 SING N N 50 A1L1S C12 H10 SING N N 51 A1L1S C11 H07 SING N N 52 A1L1S C11 H08 SING N N 53 A1L1S N03 H06 SING N N 54 A1L1S C08 H05 SING N N 55 A1L1S C07 H04 SING N N 56 A1L1S C04 H03 SING N N 57 A1L1S C03 H02 SING N N 58 A1L1S C01 H31 SING N N 59 A1L1S C01 H32 SING N N 60 A1L1S C01 H33 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L1S InChI InChI 1.06 "InChI=1S/C24H25N7O2/c1-15-3-5-17-7-9-19(30-23(17)26-15)28-21(32)11-13-25-14-12-22(33)29-20-10-8-18-6-4-16(2)27-24(18)31-20/h3-10,25H,11-14H2,1-2H3,(H,26,28,30,32)(H,27,29,31,33)" A1L1S InChIKey InChI 1.06 QZBZQIYEBGGLJT-UHFFFAOYSA-N A1L1S SMILES_CANONICAL CACTVS 3.385 "Cc1ccc2ccc(NC(=O)CCNCCC(=O)Nc3ccc4ccc(C)nc4n3)nc2n1" A1L1S SMILES CACTVS 3.385 "Cc1ccc2ccc(NC(=O)CCNCCC(=O)Nc3ccc4ccc(C)nc4n3)nc2n1" A1L1S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc2ccc(nc2n1)NC(=O)CCNCCC(=O)Nc3ccc4ccc(nc4n3)C" A1L1S SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc2ccc(nc2n1)NC(=O)CCNCCC(=O)Nc3ccc4ccc(nc4n3)C" # _pdbx_chem_comp_identifier.comp_id A1L1S _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(7-methyl-1,8-naphthyridin-2-yl)-3-[[3-[(7-methyl-1,8-naphthyridin-2-yl)amino]-3-oxidanylidene-propyl]amino]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L1S "Create component" 2024-05-09 PDBJ A1L1S "Initial release" 2025-04-30 RCSB #