data_A1L23 # _chem_comp.id A1L23 _chem_comp.name "(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-chloranyl-phenyl]carbonylamino]pentanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H18 Cl N7 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-23 _chem_comp.pdbx_modified_date 2024-12-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.821 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L23 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IT3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L23 C10 C1 C 0 1 Y N N N N N 51.189 -32.715 17.760 -0.859 0.676 -0.817 C10 A1L23 1 A1L23 C13 C2 C 0 1 Y N N N N N 51.624 -33.245 18.963 -0.703 1.306 0.413 C13 A1L23 2 A1L23 C15 C3 C 0 1 Y N N N N N 52.420 -31.074 19.619 1.667 0.936 0.294 C15 A1L23 3 A1L23 C17 C4 C 0 1 Y N N N N N 51.354 -31.377 17.506 0.251 0.175 -1.491 C17 A1L23 4 A1L23 C21 C5 C 0 1 N N S N N N 53.321 -27.735 21.455 5.423 0.729 0.823 C21 A1L23 5 A1L23 C22 C6 C 0 1 N N N N N N 52.218 -26.696 21.595 5.992 2.077 0.464 C22 A1L23 6 A1L23 C26 C7 C 0 1 N N N N N N 55.754 -27.828 20.637 5.826 -1.736 0.749 C26 A1L23 7 A1L23 C02 C8 C 0 1 N N N N N N 50.913 -39.531 14.617 -7.642 -0.697 1.309 C02 A1L23 8 A1L23 C04 C9 C 0 1 N N N N N N 51.236 -37.329 14.145 -6.653 0.633 -0.303 C04 A1L23 9 A1L23 C05 C10 C 0 1 N N N N N N 50.396 -36.989 15.205 -5.513 -0.162 -0.279 C05 A1L23 10 A1L23 C06 C11 C 0 1 N N N N N N 49.810 -37.992 15.961 -5.478 -1.262 0.591 C06 A1L23 11 A1L23 C08 C12 C 0 1 N N N N N N 50.906 -34.913 16.510 -3.200 0.357 -0.573 C08 A1L23 12 A1L23 C14 C13 C 0 1 Y N N N N N 52.238 -32.421 19.896 0.550 1.437 0.968 C14 A1L23 13 A1L23 C16 C14 C 0 1 Y N N N N N 51.966 -30.544 18.428 1.508 0.302 -0.942 C16 A1L23 14 A1L23 C18 C15 C 0 1 N N N N N N 53.078 -30.153 20.642 3.012 1.075 0.886 C18 A1L23 15 A1L23 C23 C16 C 0 1 N N N N N N 54.500 -26.993 20.836 6.336 -0.372 0.279 C23 A1L23 16 A1L23 C27 C17 C 0 1 N N N N N N 56.549 -27.271 19.458 6.725 -2.820 0.214 C27 A1L23 17 A1L23 N01 N1 N 0 1 N N N N N N 50.098 -39.238 15.623 -6.551 -1.507 1.372 N01 A1L23 18 A1L23 N03 N2 N 0 1 N N N N N N 51.486 -38.600 13.863 -7.685 0.336 0.497 N03 A1L23 19 A1L23 N07 N3 N 0 1 N N N N N N 50.091 -35.617 15.536 -4.414 0.131 -1.113 N07 A1L23 20 A1L23 N09 N4 N 0 1 N N N N N N 50.518 -33.551 16.787 -2.131 0.540 -1.373 N09 A1L23 21 A1L23 N11 N5 N 0 1 N N N N N N 51.820 -36.260 13.373 -6.721 1.725 -1.149 N11 A1L23 22 A1L23 N20 N6 N 0 1 N N N N N N 52.787 -28.726 20.531 4.088 0.590 0.235 N20 A1L23 23 A1L23 N31 N7 N 0 1 N N N N N N 51.183 -40.925 14.342 -8.724 -0.968 2.108 N31 A1L23 24 A1L23 O12 O1 O 0 1 N N N N N N 51.850 -35.423 17.048 -3.070 0.397 0.635 O12 A1L23 25 A1L23 O19 O2 O 0 1 N N N N N N 53.772 -30.609 21.506 3.149 1.627 1.961 O19 A1L23 26 A1L23 O24 O3 O 0 1 N N N N N N 51.215 -26.748 20.826 5.349 2.844 -0.214 O24 A1L23 27 A1L23 O25 O4 O 0 1 N N N N N N 52.306 -25.780 22.448 7.214 2.426 0.896 O25 A1L23 28 A1L23 O28 O5 O 0 1 N N N N N N 57.806 -27.374 19.433 6.470 -4.106 0.500 O28 A1L23 29 A1L23 O29 O6 O 0 1 N N N N N N 55.939 -26.711 18.501 7.676 -2.532 -0.473 O29 A1L23 30 A1L23 O30 O7 O 0 1 N N N N N N 49.069 -37.732 16.875 -4.494 -1.984 0.641 O30 A1L23 31 A1L23 CL32 CL1 CL 0 0 N N N N N N 50.785 -30.738 15.948 0.052 -0.612 -3.026 CL32 A1L23 32 A1L23 H1 H1 H 0 1 N N N N N N 51.486 -34.295 19.174 -1.567 1.694 0.934 H1 A1L23 33 A1L23 H2 H2 H 0 1 N N N N N N 53.588 -28.171 22.429 5.353 0.641 1.907 H2 A1L23 34 A1L23 H3 H3 H 0 1 N N N N N N 55.472 -28.871 20.430 5.827 -1.768 1.839 H3 A1L23 35 A1L23 H4 H4 H 0 1 N N N N N N 56.370 -27.788 21.547 4.812 -1.891 0.382 H4 A1L23 36 A1L23 H6 H6 H 0 1 N N N N N N 52.574 -32.829 20.838 0.670 1.928 1.923 H6 A1L23 37 A1L23 H7 H7 H 0 1 N N N N N N 52.087 -29.492 18.217 2.369 -0.086 -1.465 H7 A1L23 38 A1L23 H8 H8 H 0 1 N N N N N N 54.754 -26.148 21.493 6.335 -0.340 -0.810 H8 A1L23 39 A1L23 H9 H9 H 0 1 N N N N N N 54.185 -26.612 19.853 7.350 -0.217 0.646 H9 A1L23 40 A1L23 H10 H10 H 0 1 N N N N N N 49.322 -35.154 15.096 -4.532 0.169 -2.075 H10 A1L23 41 A1L23 H11 H11 H 0 1 N N N N N N 49.747 -33.165 16.281 -2.246 0.578 -2.336 H11 A1L23 42 A1L23 H12 H12 H 0 1 N N N N N N 52.396 -36.645 12.652 -5.972 1.938 -1.727 H12 A1L23 43 A1L23 H13 H13 H 0 1 N N N N N N 51.093 -35.711 12.961 -7.518 2.278 -1.163 H13 A1L23 44 A1L23 H14 H14 H 0 1 N N N N N N 52.195 -28.416 19.787 3.978 0.150 -0.622 H14 A1L23 45 A1L23 H15 H15 H 0 1 N N N N N N 51.794 -41.177 13.592 -8.706 -1.729 2.708 H15 A1L23 46 A1L23 H16 H16 H 0 1 N N N N N N 50.758 -41.636 14.902 -9.508 -0.397 2.072 H16 A1L23 47 A1L23 H17 H17 H 0 1 N N N N N N 51.545 -25.215 22.386 7.537 3.301 0.640 H17 A1L23 48 A1L23 H18 H18 H 0 1 N N N N N N 58.140 -26.984 18.634 7.074 -4.766 0.134 H18 A1L23 49 A1L23 H5 H5 H 0 1 N N N N N N 49.687 -39.986 16.144 -6.543 -2.263 1.980 H5 A1L23 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L23 N11 C04 SING N N 1 A1L23 N03 C04 SING N N 2 A1L23 N03 C02 DOUB N N 3 A1L23 C04 C05 DOUB N N 4 A1L23 N31 C02 SING N N 5 A1L23 C02 N01 SING N N 6 A1L23 C05 N07 SING N N 7 A1L23 C05 C06 SING N N 8 A1L23 N07 C08 SING N N 9 A1L23 N01 C06 SING N N 10 A1L23 CL32 C17 SING N N 11 A1L23 C06 O30 DOUB N N 12 A1L23 C08 N09 SING N N 13 A1L23 C08 O12 DOUB N N 14 A1L23 N09 C10 SING N N 15 A1L23 C17 C10 SING Y N 16 A1L23 C17 C16 DOUB Y N 17 A1L23 C10 C13 DOUB Y N 18 A1L23 C16 C15 SING Y N 19 A1L23 O29 C27 DOUB N N 20 A1L23 C13 C14 SING Y N 21 A1L23 O28 C27 SING N N 22 A1L23 C27 C26 SING N N 23 A1L23 C15 C14 DOUB Y N 24 A1L23 C15 C18 SING N N 25 A1L23 N20 C18 SING N N 26 A1L23 N20 C21 SING N N 27 A1L23 C26 C23 SING N N 28 A1L23 C18 O19 DOUB N N 29 A1L23 O24 C22 DOUB N N 30 A1L23 C23 C21 SING N N 31 A1L23 C21 C22 SING N N 32 A1L23 C22 O25 SING N N 33 A1L23 C13 H1 SING N N 34 A1L23 C21 H2 SING N N 35 A1L23 C26 H3 SING N N 36 A1L23 C26 H4 SING N N 37 A1L23 C14 H6 SING N N 38 A1L23 C16 H7 SING N N 39 A1L23 C23 H8 SING N N 40 A1L23 C23 H9 SING N N 41 A1L23 N07 H10 SING N N 42 A1L23 N09 H11 SING N N 43 A1L23 N11 H12 SING N N 44 A1L23 N11 H13 SING N N 45 A1L23 N20 H14 SING N N 46 A1L23 N31 H15 SING N N 47 A1L23 N31 H16 SING N N 48 A1L23 O25 H17 SING N N 49 A1L23 O28 H18 SING N N 50 A1L23 N01 H5 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L23 InChI InChI 1.06 "InChI=1S/C17H18ClN7O7/c18-7-5-6(13(28)21-9(15(30)31)3-4-10(26)27)1-2-8(7)22-17(32)23-11-12(19)24-16(20)25-14(11)29/h1-2,5,9H,3-4H2,(H,21,28)(H,26,27)(H,30,31)(H2,22,23,32)(H5,19,20,24,25,29)/t9-/m0/s1" A1L23 InChIKey InChI 1.06 BJAUZBHLYBAGGA-VIFPVBQESA-N A1L23 SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=C(NC(=O)Nc2ccc(cc2Cl)C(=O)N[C@@H](CCC(O)=O)C(O)=O)C(=O)N1)N" A1L23 SMILES CACTVS 3.385 "NC1=NC(=C(NC(=O)Nc2ccc(cc2Cl)C(=O)N[CH](CCC(O)=O)C(O)=O)C(=O)N1)N" A1L23 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)Cl)NC(=O)NC2=C(N=C(NC2=O)N)N" A1L23 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C(=O)NC(CCC(=O)O)C(=O)O)Cl)NC(=O)NC2=C(N=C(NC2=O)N)N" # _pdbx_chem_comp_identifier.comp_id A1L23 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-chloranyl-phenyl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L23 "Create component" 2024-07-23 PDBJ A1L23 "Modify coordinates" 2024-07-23 PDBJ A1L23 "Initial release" 2025-01-01 RCSB #