data_A1L25 # _chem_comp.id A1L25 _chem_comp.name "(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-methyl-phenyl]carbonylamino]pentanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 N7 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-23 _chem_comp.pdbx_modified_date 2024-12-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 447.402 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L25 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ITA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L25 C11 C1 C 0 1 Y N N N N N -53.642 27.864 -17.681 0.887 -1.532 0.999 C11 A1L25 1 A1L25 C13 C2 C 0 1 Y N N N N N -54.061 28.996 -19.827 -1.045 -0.327 0.245 C13 A1L25 2 A1L25 C14 C3 C 0 1 Y N N N N N -52.784 29.794 -19.550 -1.831 -1.462 0.462 C14 A1L25 3 A1L25 C15 C4 C 0 1 Y N N N N N -52.078 29.589 -18.437 -1.242 -2.635 0.944 C15 A1L25 4 A1L25 C16 C5 C 0 1 Y N N N N N -52.540 28.534 -17.441 0.107 -2.664 1.216 C16 A1L25 5 A1L25 C17 C6 C 0 1 N N N N N N -52.323 30.830 -20.581 -3.279 -1.425 0.176 C17 A1L25 6 A1L25 C24 C7 C 0 1 N N N N N N -51.787 28.253 -16.131 0.740 -3.923 1.748 C24 A1L25 7 A1L25 C28 C8 C 0 1 N N N N N N -50.522 33.624 -21.114 -5.782 1.184 -0.486 C28 A1L25 8 A1L25 C01 C9 C 0 1 N N N N N N -59.511 24.233 -14.553 6.959 1.799 -1.095 C01 A1L25 9 A1L25 C03 C10 C 0 1 N N N N N N -57.563 24.052 -15.897 5.469 -0.015 -1.189 C03 A1L25 10 A1L25 C04 C11 C 0 1 N N N N N N -56.932 25.068 -15.118 5.280 0.108 0.195 C04 A1L25 11 A1L25 C05 C12 C 0 1 N N N N N N -57.592 25.636 -14.089 5.972 1.102 0.877 C05 A1L25 12 A1L25 C08 C13 C 0 1 N N N N N N -55.396 26.516 -16.439 3.105 -0.814 0.549 C08 A1L25 13 A1L25 C12 C14 C 0 1 Y N N N N N -54.455 28.087 -18.956 0.305 -0.365 0.513 C12 A1L25 14 A1L25 C20 C15 C 0 1 N N S N N N -50.320 32.152 -21.501 -5.281 -0.259 -0.578 C20 A1L25 15 A1L25 C25 C16 C 0 1 N N N N N N -48.835 31.782 -21.600 -5.533 -0.791 -1.965 C25 A1L25 16 A1L25 C29 C17 C 0 1 N N N N N N -50.763 33.840 -19.622 -5.640 1.683 0.953 C29 A1L25 17 A1L25 C30 C18 C 0 1 N N N N N N -51.487 35.177 -19.419 -6.134 3.103 1.043 C30 A1L25 18 A1L25 N02 N1 N 0 1 N N N N N N -58.858 23.664 -15.577 6.310 0.839 -1.809 N02 A1L25 19 A1L25 N06 N2 N 0 1 N N N N N N -58.885 25.241 -13.778 6.793 1.918 0.204 N06 A1L25 20 A1L25 N09 N3 N 0 1 N N N N N N -60.860 23.785 -14.273 7.810 2.657 -1.744 N09 A1L25 21 A1L25 N10 N4 N 0 1 N N N N N N -54.030 26.877 -16.712 2.253 -1.565 1.275 N10 A1L25 22 A1L25 N18 N5 N 0 1 N N N N N N -50.913 31.196 -20.584 -3.844 -0.296 -0.294 N18 A1L25 23 A1L25 N22 N6 N 0 1 N N N N N N -55.585 25.483 -15.442 4.410 -0.763 0.883 N22 A1L25 24 A1L25 N23 N7 N 0 1 N N N N N N -56.916 26.668 -13.358 5.810 1.251 2.242 N23 A1L25 25 A1L25 O07 O1 O 0 1 N N N N N N -56.316 27.033 -16.990 2.697 -0.182 -0.406 O07 A1L25 26 A1L25 O19 O2 O 0 1 N N N N N N -53.091 31.324 -21.334 -3.961 -2.414 0.365 O19 A1L25 27 A1L25 O21 O3 O 0 1 N N N N N N -56.870 23.468 -16.965 4.883 -0.879 -1.822 O21 A1L25 28 A1L25 O26 O4 O 0 1 N N N N N N -48.335 30.932 -20.804 -6.786 -0.852 -2.443 O26 A1L25 29 A1L25 O27 O5 O 0 1 N N N N N N -48.123 32.292 -22.511 -4.607 -1.163 -2.647 O27 A1L25 30 A1L25 O31 O6 O 0 1 N N N N N N -51.322 35.854 -18.357 -6.105 3.751 2.219 O31 A1L25 31 A1L25 O32 O7 O 0 1 N N N N N N -52.257 35.608 -20.320 -6.555 3.660 0.057 O32 A1L25 32 A1L25 H1 H1 H 0 1 N N N N N N -54.633 29.175 -20.725 -1.497 0.580 -0.128 H1 A1L25 33 A1L25 H2 H2 H 0 1 N N N N N N -51.186 30.167 -18.244 -1.847 -3.513 1.113 H2 A1L25 34 A1L25 H3 H3 H 0 1 N N N N N N -52.171 28.911 -15.338 0.706 -3.914 2.838 H3 A1L25 35 A1L25 H4 H4 H 0 1 N N N N N N -51.937 27.203 -15.840 0.195 -4.790 1.375 H4 A1L25 36 A1L25 H5 H5 H 0 1 N N N N N N -50.713 28.443 -16.277 1.777 -3.977 1.417 H5 A1L25 37 A1L25 H6 H6 H 0 1 N N N N N N -49.622 34.186 -21.405 -5.191 1.816 -1.150 H6 A1L25 38 A1L25 H7 H7 H 0 1 N N N N N N -51.391 34.012 -21.666 -6.830 1.224 -0.784 H7 A1L25 39 A1L25 H8 H8 H 0 1 N N N N N N -55.345 27.505 -19.142 0.913 0.512 0.346 H8 A1L25 40 A1L25 H9 H9 H 0 1 N N N N N N -50.766 32.007 -22.496 -5.810 -0.874 0.149 H9 A1L25 41 A1L25 H10 H10 H 0 1 N N N N N N -51.383 33.022 -19.227 -6.230 1.050 1.616 H10 A1L25 42 A1L25 H11 H11 H 0 1 N N N N N N -49.799 33.859 -19.092 -4.592 1.642 1.250 H11 A1L25 43 A1L25 H13 H13 H 0 1 N N N N N N -61.374 24.189 -13.516 8.281 3.342 -1.245 H13 A1L25 44 A1L25 H14 H14 H 0 1 N N N N N N -61.277 23.072 -14.836 7.940 2.578 -2.702 H14 A1L25 45 A1L25 H15 H15 H 0 1 N N N N N N -53.309 26.414 -16.197 2.590 -2.129 1.988 H15 A1L25 46 A1L25 H16 H16 H 0 1 N N N N N N -50.315 30.761 -19.911 -3.299 0.493 -0.445 H16 A1L25 47 A1L25 H17 H17 H 0 1 N N N N N N -54.799 25.065 -14.986 4.750 -1.326 1.596 H17 A1L25 48 A1L25 H18 H18 H 0 1 N N N N N N -57.517 27.016 -12.638 5.211 0.661 2.727 H18 A1L25 49 A1L25 H19 H19 H 0 1 N N N N N N -56.085 26.295 -12.946 6.294 1.946 2.715 H19 A1L25 50 A1L25 H20 H20 H 0 1 N N N N N N -47.422 30.789 -21.025 -6.897 -1.201 -3.338 H20 A1L25 51 A1L25 H21 H21 H 0 1 N N N N N N -51.844 36.647 -18.402 -6.432 4.661 2.227 H21 A1L25 52 A1L25 H22 H22 H 0 1 N N N N N N -59.308 22.952 -16.116 6.452 0.768 -2.766 H22 A1L25 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L25 O27 C25 DOUB N N 1 A1L25 C25 C20 SING N N 2 A1L25 C25 O26 SING N N 3 A1L25 C20 C28 SING N N 4 A1L25 C20 N18 SING N N 5 A1L25 O19 C17 DOUB N N 6 A1L25 C28 C29 SING N N 7 A1L25 N18 C17 SING N N 8 A1L25 C17 C14 SING N N 9 A1L25 O32 C30 DOUB N N 10 A1L25 C13 C14 DOUB Y N 11 A1L25 C13 C12 SING Y N 12 A1L25 C29 C30 SING N N 13 A1L25 C14 C15 SING Y N 14 A1L25 C30 O31 SING N N 15 A1L25 C12 C11 DOUB Y N 16 A1L25 C15 C16 DOUB Y N 17 A1L25 C11 C16 SING Y N 18 A1L25 C11 N10 SING N N 19 A1L25 C16 C24 SING N N 20 A1L25 O07 C08 DOUB N N 21 A1L25 O21 C03 DOUB N N 22 A1L25 N10 C08 SING N N 23 A1L25 C08 N22 SING N N 24 A1L25 C03 N02 SING N N 25 A1L25 C03 C04 SING N N 26 A1L25 N02 C01 SING N N 27 A1L25 N22 C04 SING N N 28 A1L25 C04 C05 DOUB N N 29 A1L25 C01 N09 SING N N 30 A1L25 C01 N06 DOUB N N 31 A1L25 C05 N06 SING N N 32 A1L25 C05 N23 SING N N 33 A1L25 C13 H1 SING N N 34 A1L25 C15 H2 SING N N 35 A1L25 C24 H3 SING N N 36 A1L25 C24 H4 SING N N 37 A1L25 C24 H5 SING N N 38 A1L25 C28 H6 SING N N 39 A1L25 C28 H7 SING N N 40 A1L25 C12 H8 SING N N 41 A1L25 C20 H9 SING N N 42 A1L25 C29 H10 SING N N 43 A1L25 C29 H11 SING N N 44 A1L25 N09 H13 SING N N 45 A1L25 N09 H14 SING N N 46 A1L25 N10 H15 SING N N 47 A1L25 N18 H16 SING N N 48 A1L25 N22 H17 SING N N 49 A1L25 N23 H18 SING N N 50 A1L25 N23 H19 SING N N 51 A1L25 O26 H20 SING N N 52 A1L25 O31 H21 SING N N 53 A1L25 N02 H22 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L25 InChI InChI 1.06 "InChI=1S/C18H21N7O7/c1-7-6-8(14(28)21-10(16(30)31)4-5-11(26)27)2-3-9(7)22-18(32)23-12-13(19)24-17(20)25-15(12)29/h2-3,6,10H,4-5H2,1H3,(H,21,28)(H,26,27)(H,30,31)(H2,22,23,32)(H5,19,20,24,25,29)/t10-/m0/s1" A1L25 InChIKey InChI 1.06 IIRDXYBDXIIREK-JTQLQIEISA-N A1L25 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(ccc1NC(=O)NC2=C(N)N=C(N)NC2=O)C(=O)N[C@@H](CCC(O)=O)C(O)=O" A1L25 SMILES CACTVS 3.385 "Cc1cc(ccc1NC(=O)NC2=C(N)N=C(N)NC2=O)C(=O)N[CH](CCC(O)=O)C(O)=O" A1L25 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NC(=O)NC2=C(N=C(NC2=O)N)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O" A1L25 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NC(=O)NC2=C(N=C(NC2=O)N)N)C(=O)NC(CCC(=O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1L25 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-5-yl]carbamoylamino]-3-methyl-phenyl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L25 "Create component" 2024-07-23 PDBJ A1L25 "Initial release" 2025-01-01 RCSB #