data_A1L2P # _chem_comp.id A1L2P _chem_comp.name "(2~{S})-1-[[4-methoxy-2-[(2-methyl-3-phenyl-phenyl)methoxy]pyrimidin-5-yl]methyl]piperidine-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-03 _chem_comp.pdbx_modified_date 2025-06-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 447.526 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L2P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IJT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L2P C32 C1 C 0 1 Y N N N N N 12.626 11.395 22.447 -9.044 -2.077 0.419 C32 A1L2P 1 A1L2P C31 C2 C 0 1 Y N N N N N 12.138 11.806 21.228 -8.841 -1.096 1.372 C31 A1L2P 2 A1L2P C33 C3 C 0 1 Y N N N N N 11.827 10.715 23.359 -8.145 -2.235 -0.621 C33 A1L2P 3 A1L2P C26 C4 C 0 1 Y N N N N N 7.119 9.443 20.049 -4.690 2.667 0.153 C26 A1L2P 4 A1L2P C30 C5 C 0 1 Y N N N N N 10.830 11.558 20.898 -7.739 -0.268 1.291 C30 A1L2P 5 A1L2P C34 C6 C 0 1 Y N N N N N 10.519 10.461 23.015 -7.040 -1.413 -0.712 C34 A1L2P 6 A1L2P C27 C7 C 0 1 Y N N N N N 8.410 9.762 20.408 -5.797 1.846 0.241 C27 A1L2P 7 A1L2P C25 C8 C 0 1 Y N N N N N 6.062 10.002 20.728 -3.432 2.119 -0.023 C25 A1L2P 8 A1L2P C12 C9 C 0 1 Y N N N N N 0.839 10.293 23.822 1.914 -0.828 -0.806 C12 A1L2P 9 A1L2P C29 C10 C 0 1 Y N N N N N 10.023 10.873 21.791 -6.831 -0.423 0.245 C29 A1L2P 10 A1L2P C28 C11 C 0 1 Y N N N N N 8.644 10.600 21.445 -5.645 0.464 0.152 C28 A1L2P 11 A1L2P C3 C12 C 0 1 Y N N N N N 6.277 10.885 21.764 -3.276 0.748 -0.112 C3 A1L2P 12 A1L2P C11 C13 C 0 1 Y N N N N N 0.626 11.565 24.314 2.915 0.122 -0.876 C11 A1L2P 13 A1L2P C2 C14 C 0 1 Y N N N N N 7.573 11.180 22.128 -4.375 -0.082 -0.025 C2 A1L2P 14 A1L2P C8 C15 C 0 1 Y N N N N N 1.646 12.471 24.112 2.564 1.467 -0.766 C8 A1L2P 15 A1L2P C6 C16 C 0 1 Y N N N N N 2.878 10.920 23.044 0.357 0.848 -0.536 C6 A1L2P 16 A1L2P C22 C17 C 0 1 N N N N N N -0.605 10.695 28.420 5.920 -2.468 -0.269 C22 A1L2P 17 A1L2P C18 C18 C 0 1 N N N N N N -2.508 13.149 27.178 7.210 0.280 2.063 C18 A1L2P 18 A1L2P C17 C19 C 0 1 N N N N N N -3.179 11.818 26.901 5.934 1.125 2.046 C17 A1L2P 19 A1L2P C19 C20 C 0 1 N N N N N N -1.071 13.038 27.671 6.880 -1.139 1.591 C19 A1L2P 20 A1L2P C16 C21 C 0 1 N N N N N N -2.329 10.752 26.208 5.345 1.123 0.633 C16 A1L2P 21 A1L2P C20 C22 C 0 1 N N S N N N -0.389 11.722 27.348 6.265 -1.076 0.191 C20 A1L2P 22 A1L2P C1 C23 C 0 1 N N N N N N 7.855 12.131 23.229 -4.203 -1.576 -0.122 C1 A1L2P 23 A1L2P C10 C24 C 0 1 N N N N N N 2.600 14.320 24.986 3.071 3.785 -0.707 C10 A1L2P 24 A1L2P C14 C25 C 0 1 N N N N N N -0.630 11.948 25.017 4.353 -0.287 -1.067 C14 A1L2P 25 A1L2P C4 C26 C 0 1 N N N N N N 5.078 11.474 22.466 -1.902 0.158 -0.304 C4 A1L2P 26 A1L2P N13 N1 N 0 1 Y N N N N N 1.957 9.950 23.170 0.660 -0.435 -0.637 N13 A1L2P 27 A1L2P N7 N2 N 0 1 Y N N N N N 2.798 12.177 23.484 1.287 1.788 -0.598 N7 A1L2P 28 A1L2P N15 N3 N 0 1 N N N N N N -0.896 11.077 26.156 5.046 -0.257 0.228 N15 A1L2P 29 A1L2P O24 O1 O 0 1 N N N N N N 0.058 9.681 28.518 4.822 -2.923 -0.050 O24 A1L2P 30 A1L2P O23 O2 O 0 1 N N N N N N -1.654 10.995 29.227 6.832 -3.204 -0.923 O23 A1L2P 31 A1L2P O9 O3 O 0 1 N N N N N N 1.375 13.724 24.594 3.513 2.432 -0.829 O9 A1L2P 32 A1L2P O5 O4 O 0 1 N N N N N N 4.015 10.514 22.381 -0.937 1.210 -0.365 O5 A1L2P 33 A1L2P H60 H1 H 0 1 N N N N N N 13.654 11.606 22.701 -9.905 -2.725 0.489 H60 A1L2P 34 A1L2P H59 H2 H 0 1 N N N N N N 12.783 12.323 20.533 -9.545 -0.977 2.182 H59 A1L2P 35 A1L2P H61 H3 H 0 1 N N N N N N 12.222 10.395 24.312 -8.309 -3.003 -1.363 H61 A1L2P 36 A1L2P H56 H4 H 0 1 N N N N N N 6.937 8.755 19.236 -4.808 3.738 0.217 H56 A1L2P 37 A1L2P H58 H5 H 0 1 N N N N N N 10.433 11.894 19.951 -7.582 0.498 2.035 H58 A1L2P 38 A1L2P H62 H6 H 0 1 N N N N N N 9.875 9.936 23.705 -6.339 -1.538 -1.524 H62 A1L2P 39 A1L2P H57 H7 H 0 1 N N N N N N 9.240 9.341 19.859 -6.778 2.275 0.379 H57 A1L2P 40 A1L2P H55 H8 H 0 1 N N N N N N 5.051 9.746 20.446 -2.569 2.765 -0.092 H55 A1L2P 41 A1L2P H43 H9 H 0 1 N N N N N N 0.074 9.545 23.969 2.150 -1.878 -0.892 H43 A1L2P 42 A1L2P H51 H10 H 0 1 N N N N N N -2.508 13.735 26.247 7.950 0.723 1.396 H51 A1L2P 43 A1L2P H50 H11 H 0 1 N N N N N N -3.095 13.677 27.944 7.609 0.243 3.077 H50 A1L2P 44 A1L2P H48 H12 H 0 1 N N N N N N -3.511 11.405 27.865 5.209 0.704 2.742 H48 A1L2P 45 A1L2P H49 H13 H 0 1 N N N N N N -4.055 12.012 26.264 6.170 2.148 2.340 H49 A1L2P 46 A1L2P H53 H14 H 0 1 N N N N N N -0.487 13.848 27.210 7.793 -1.734 1.561 H53 A1L2P 47 A1L2P H52 H15 H 0 1 N N N N N N -1.073 13.163 28.764 6.170 -1.596 2.281 H52 A1L2P 48 A1L2P H46 H16 H 0 1 N N N N N N -2.450 9.804 26.753 4.429 1.712 0.620 H46 A1L2P 49 A1L2P H47 H17 H 0 1 N N N N N N -2.695 10.632 25.178 6.065 1.557 -0.061 H47 A1L2P 50 A1L2P H21 H18 H 0 1 N N N N N N 0.691 11.902 27.240 6.980 -0.631 -0.500 H21 A1L2P 51 A1L2P H36 H19 H 0 1 N N N N N N 7.928 13.151 22.824 -4.282 -1.884 -1.164 H36 A1L2P 52 A1L2P H37 H20 H 0 1 N N N N N N 7.042 12.088 23.968 -3.224 -1.855 0.267 H37 A1L2P 53 A1L2P H35 H21 H 0 1 N N N N N N 8.805 11.860 23.713 -4.980 -2.070 0.462 H35 A1L2P 54 A1L2P H42 H22 H 0 1 N N N N N N 2.408 15.330 25.378 2.578 3.922 0.255 H42 A1L2P 55 A1L2P H40 H23 H 0 1 N N N N N N 3.072 13.707 25.768 3.928 4.455 -0.775 H40 A1L2P 56 A1L2P H41 H24 H 0 1 N N N N N N 3.271 14.385 24.117 2.369 4.012 -1.510 H41 A1L2P 57 A1L2P H44 H25 H 0 1 N N N N N N -0.537 12.984 25.374 4.393 -1.296 -1.477 H44 A1L2P 58 A1L2P H45 H26 H 0 1 N N N N N N -1.470 11.878 24.310 4.839 0.405 -1.755 H45 A1L2P 59 A1L2P H38 H27 H 0 1 N N N N N N 5.320 11.674 23.520 -1.669 -0.501 0.532 H38 A1L2P 60 A1L2P H39 H28 H 0 1 N N N N N N 4.778 12.411 21.975 -1.878 -0.411 -1.234 H39 A1L2P 61 A1L2P H54 H30 H 0 1 N N N N N N -1.776 10.298 29.861 6.565 -4.092 -1.199 H54 A1L2P 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L2P C32 C31 DOUB Y N 1 A1L2P C32 C33 SING Y N 2 A1L2P C31 C30 SING Y N 3 A1L2P C33 C34 DOUB Y N 4 A1L2P C26 C27 DOUB Y N 5 A1L2P C26 C25 SING Y N 6 A1L2P C30 C29 DOUB Y N 7 A1L2P C34 C29 SING Y N 8 A1L2P C27 C28 SING Y N 9 A1L2P C25 C3 DOUB Y N 10 A1L2P C12 C11 DOUB Y N 11 A1L2P C12 N13 SING Y N 12 A1L2P C29 C28 SING N N 13 A1L2P C28 C2 DOUB Y N 14 A1L2P C3 C2 SING Y N 15 A1L2P C3 C4 SING N N 16 A1L2P C11 C8 SING Y N 17 A1L2P C11 C14 SING N N 18 A1L2P C2 C1 SING N N 19 A1L2P C8 N7 DOUB Y N 20 A1L2P C8 O9 SING N N 21 A1L2P C6 N13 DOUB Y N 22 A1L2P C6 N7 SING Y N 23 A1L2P C6 O5 SING N N 24 A1L2P C22 C20 SING N N 25 A1L2P C22 O24 DOUB N N 26 A1L2P C22 O23 SING N N 27 A1L2P C18 C17 SING N N 28 A1L2P C18 C19 SING N N 29 A1L2P C17 C16 SING N N 30 A1L2P C19 C20 SING N N 31 A1L2P C16 N15 SING N N 32 A1L2P C20 N15 SING N N 33 A1L2P C10 O9 SING N N 34 A1L2P C14 N15 SING N N 35 A1L2P C4 O5 SING N N 36 A1L2P C32 H60 SING N N 37 A1L2P C31 H59 SING N N 38 A1L2P C33 H61 SING N N 39 A1L2P C26 H56 SING N N 40 A1L2P C30 H58 SING N N 41 A1L2P C34 H62 SING N N 42 A1L2P C27 H57 SING N N 43 A1L2P C25 H55 SING N N 44 A1L2P C12 H43 SING N N 45 A1L2P C18 H51 SING N N 46 A1L2P C18 H50 SING N N 47 A1L2P C17 H48 SING N N 48 A1L2P C17 H49 SING N N 49 A1L2P C19 H53 SING N N 50 A1L2P C19 H52 SING N N 51 A1L2P C16 H46 SING N N 52 A1L2P C16 H47 SING N N 53 A1L2P C20 H21 SING N N 54 A1L2P C1 H36 SING N N 55 A1L2P C1 H37 SING N N 56 A1L2P C1 H35 SING N N 57 A1L2P C10 H42 SING N N 58 A1L2P C10 H40 SING N N 59 A1L2P C10 H41 SING N N 60 A1L2P C14 H44 SING N N 61 A1L2P C14 H45 SING N N 62 A1L2P C4 H38 SING N N 63 A1L2P C4 H39 SING N N 64 A1L2P O23 H54 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L2P InChI InChI 1.06 "InChI=1S/C26H29N3O4/c1-18-20(11-8-12-22(18)19-9-4-3-5-10-19)17-33-26-27-15-21(24(28-26)32-2)16-29-14-7-6-13-23(29)25(30)31/h3-5,8-12,15,23H,6-7,13-14,16-17H2,1-2H3,(H,30,31)/t23-/m0/s1" A1L2P InChIKey InChI 1.06 ANUJMSZHAOMHOI-QHCPKHFHSA-N A1L2P SMILES_CANONICAL CACTVS 3.385 "COc1nc(OCc2cccc(c2C)c3ccccc3)ncc1CN4CCCC[C@H]4C(O)=O" A1L2P SMILES CACTVS 3.385 "COc1nc(OCc2cccc(c2C)c3ccccc3)ncc1CN4CCCC[CH]4C(O)=O" A1L2P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2ccccc2)COc3ncc(c(n3)OC)CN4CCCC[C@H]4C(=O)O" A1L2P SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2ccccc2)COc3ncc(c(n3)OC)CN4CCCCC4C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1L2P _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-1-[[4-methoxy-2-[(2-methyl-3-phenyl-phenyl)methoxy]pyrimidin-5-yl]methyl]piperidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L2P "Create component" 2024-07-03 PDBJ A1L2P "Initial release" 2025-07-02 RCSB #