data_A1L2T # _chem_comp.id A1L2T _chem_comp.name "~{N}4-(1,3-benzodioxol-5-ylmethyl)-6-(1~{H}-indol-4-yl)pyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H17 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-04 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 359.381 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L2T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IM5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L2T C10 C1 C 0 1 Y N N N N N 16.539 68.707 43.263 -6.079 0.448 0.533 C10 A1L2T 1 A1L2T C17 C2 C 0 1 Y N N N N N 18.030 65.441 36.478 2.313 -0.385 0.026 C17 A1L2T 2 A1L2T C20 C3 C 0 1 Y N N N N N 19.333 64.687 32.976 3.855 3.047 0.027 C20 A1L2T 3 A1L2T C21 C4 C 0 1 Y N N N N N 19.269 65.878 32.299 5.201 2.762 -0.057 C21 A1L2T 4 A1L2T C22 C5 C 0 1 Y N N N N N 18.780 66.980 33.013 5.634 1.441 -0.116 C22 A1L2T 5 A1L2T C24 C6 C 0 1 Y N N N N N 18.089 69.031 33.657 6.752 -0.504 -0.229 C24 A1L2T 6 A1L2T C26 C7 C 0 1 Y N N N N N 18.365 66.876 34.379 4.689 0.401 -0.088 C26 A1L2T 7 A1L2T C02 C8 C 0 1 Y N N N N N 18.640 64.674 38.566 1.805 -2.639 0.008 C02 A1L2T 8 A1L2T C04 C9 C 0 1 Y N N N N N 16.484 65.555 38.398 0.047 -1.148 0.140 C04 A1L2T 9 A1L2T C06 C10 C 0 1 N N N N N N 14.786 67.213 39.558 -1.810 0.474 0.280 C06 A1L2T 10 A1L2T C07 C11 C 0 1 Y N N N N N 15.427 67.723 40.873 -3.314 0.464 0.367 C07 A1L2T 11 A1L2T C08 C12 C 0 1 Y N N N N N 15.071 68.959 41.423 -3.934 0.435 1.602 C08 A1L2T 12 A1L2T C09 C13 C 0 1 Y N N N N N 15.611 69.480 42.617 -5.314 0.426 1.687 C09 A1L2T 13 A1L2T C11 C14 C 0 1 Y N N N N N 16.921 67.455 42.740 -5.455 0.473 -0.712 C11 A1L2T 14 A1L2T C12 C15 C 0 1 Y N N N N N 16.387 66.950 41.569 -4.072 0.481 -0.789 C12 A1L2T 15 A1L2T C14 C16 C 0 1 N N N N N N 17.979 67.777 44.706 -7.626 0.057 -1.030 C14 A1L2T 16 A1L2T C16 C17 C 0 1 Y N N N N N 16.769 65.792 37.002 0.953 -0.090 0.110 C16 A1L2T 17 A1L2T C18 C18 C 0 1 Y N N N N N 18.434 65.646 35.045 3.317 0.702 -0.003 C18 A1L2T 18 A1L2T C19 C19 C 0 1 Y N N N N N 18.925 64.567 34.326 2.914 2.031 0.054 C19 A1L2T 19 A1L2T C25 C20 C 0 1 Y N N N N N 17.932 68.198 34.754 5.453 -0.844 -0.164 C25 A1L2T 20 A1L2T N01 N1 N 0 1 N N N N N N 19.621 64.094 39.342 2.242 -3.951 -0.044 N01 A1L2T 21 A1L2T N03 N2 N 0 1 Y N N N N N 17.440 64.976 39.203 0.505 -2.395 0.087 N03 A1L2T 22 A1L2T N05 N3 N 0 1 N N N N N N 15.227 65.891 38.971 -1.315 -0.904 0.223 N05 A1L2T 23 A1L2T N23 N4 N 0 1 Y N N N N N 18.605 68.287 32.597 6.879 0.857 -0.201 N23 A1L2T 24 A1L2T N27 N5 N 0 1 Y N N N N N 18.995 64.871 37.241 2.697 -1.662 -0.023 N27 A1L2T 25 A1L2T O13 O1 O 0 1 N N N N N N 17.856 66.903 43.583 -6.416 0.486 -1.682 O13 A1L2T 26 A1L2T O15 O2 O 0 1 N N N N N N 17.220 68.956 44.426 -7.431 0.445 0.343 O15 A1L2T 27 A1L2T H201 H1 H 0 0 N N N N N N 19.706 63.813 32.463 3.530 4.076 0.076 H201 A1L2T 28 A1L2T H211 H2 H 0 0 N N N N N N 19.580 65.962 31.268 5.922 3.566 -0.077 H211 A1L2T 29 A1L2T H241 H3 H 0 0 N N N N N N 17.851 70.084 33.628 7.573 -1.203 -0.294 H241 A1L2T 30 A1L2T H062 H4 H 0 0 N N N N N N 14.975 67.980 38.793 -1.501 1.008 -0.618 H062 A1L2T 31 A1L2T H061 H5 H 0 0 N N N N N N 13.704 67.136 39.740 -1.398 0.971 1.159 H061 A1L2T 32 A1L2T H081 H6 H 0 0 N N N N N N 14.336 69.552 40.900 -3.338 0.419 2.503 H081 A1L2T 33 A1L2T H091 H7 H 0 0 N N N N N N 15.308 70.442 43.003 -5.795 0.401 2.653 H091 A1L2T 34 A1L2T H121 H8 H 0 0 N N N N N N 16.696 65.986 41.193 -3.585 0.504 -1.753 H121 A1L2T 35 A1L2T H142 H9 H 0 0 N N N N N N 17.587 67.285 45.608 -8.491 0.567 -1.453 H142 A1L2T 36 A1L2T H141 H10 H 0 0 N N N N N N 19.036 68.040 44.862 -7.742 -1.024 -1.111 H141 A1L2T 37 A1L2T H161 H11 H 0 0 N N N N N N 16.020 66.236 36.363 0.611 0.933 0.151 H161 A1L2T 38 A1L2T H191 H12 H 0 0 N N N N N N 18.998 63.605 34.811 1.863 2.272 0.124 H191 A1L2T 39 A1L2T H251 H13 H 0 0 N N N N N N 17.551 68.489 35.722 5.049 -1.846 -0.166 H251 A1L2T 40 A1L2T H011 H14 H 0 0 N N N N N N 20.431 63.920 38.781 1.600 -4.678 -0.022 H011 A1L2T 41 A1L2T H012 H15 H 0 0 N N N N N N 19.861 64.711 40.091 3.191 -4.145 -0.103 H012 A1L2T 42 A1L2T H051 H16 H 0 0 N N N N N N 14.563 65.703 38.248 -1.940 -1.645 0.244 H051 A1L2T 43 A1L2T H231 H17 H 0 0 N N N N N N 18.814 68.641 31.685 7.720 1.339 -0.237 H231 A1L2T 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L2T C21 C20 DOUB Y N 1 A1L2T C21 C22 SING Y N 2 A1L2T N23 C22 SING Y N 3 A1L2T N23 C24 SING Y N 4 A1L2T C20 C19 SING Y N 5 A1L2T C22 C26 DOUB Y N 6 A1L2T C24 C25 DOUB Y N 7 A1L2T C19 C18 DOUB Y N 8 A1L2T C26 C25 SING Y N 9 A1L2T C26 C18 SING Y N 10 A1L2T C18 C17 SING N N 11 A1L2T C17 C16 DOUB Y N 12 A1L2T C17 N27 SING Y N 13 A1L2T C16 C04 SING Y N 14 A1L2T N27 C02 DOUB Y N 15 A1L2T C04 N05 SING N N 16 A1L2T C04 N03 DOUB Y N 17 A1L2T C02 N03 SING Y N 18 A1L2T C02 N01 SING N N 19 A1L2T N05 C06 SING N N 20 A1L2T C06 C07 SING N N 21 A1L2T C07 C08 DOUB Y N 22 A1L2T C07 C12 SING Y N 23 A1L2T C08 C09 SING Y N 24 A1L2T C12 C11 DOUB Y N 25 A1L2T C09 C10 DOUB Y N 26 A1L2T C11 C10 SING Y N 27 A1L2T C11 O13 SING N N 28 A1L2T C10 O15 SING N N 29 A1L2T O13 C14 SING N N 30 A1L2T O15 C14 SING N N 31 A1L2T C20 H201 SING N N 32 A1L2T C21 H211 SING N N 33 A1L2T C24 H241 SING N N 34 A1L2T C06 H062 SING N N 35 A1L2T C06 H061 SING N N 36 A1L2T C08 H081 SING N N 37 A1L2T C09 H091 SING N N 38 A1L2T C12 H121 SING N N 39 A1L2T C14 H142 SING N N 40 A1L2T C14 H141 SING N N 41 A1L2T C16 H161 SING N N 42 A1L2T C19 H191 SING N N 43 A1L2T C25 H251 SING N N 44 A1L2T N01 H011 SING N N 45 A1L2T N01 H012 SING N N 46 A1L2T N05 H051 SING N N 47 A1L2T N23 H231 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L2T InChI InChI 1.06 "InChI=1S/C20H17N5O2/c21-20-24-16(13-2-1-3-15-14(13)6-7-22-15)9-19(25-20)23-10-12-4-5-17-18(8-12)27-11-26-17/h1-9,22H,10-11H2,(H3,21,23,24,25)" A1L2T InChIKey InChI 1.06 SPALQHNRNFKUDI-UHFFFAOYSA-N A1L2T SMILES_CANONICAL CACTVS 3.385 "Nc1nc(NCc2ccc3OCOc3c2)cc(n1)c4cccc5[nH]ccc45" A1L2T SMILES CACTVS 3.385 "Nc1nc(NCc2ccc3OCOc3c2)cc(n1)c4cccc5[nH]ccc45" A1L2T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2cc[nH]c2c1)c3cc(nc(n3)N)NCc4ccc5c(c4)OCO5" A1L2T SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2cc[nH]c2c1)c3cc(nc(n3)N)NCc4ccc5c(c4)OCO5" # _pdbx_chem_comp_identifier.comp_id A1L2T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}4-(1,3-benzodioxol-5-ylmethyl)-6-(1~{H}-indol-4-yl)pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L2T "Create component" 2024-07-04 PDBJ A1L2T "Initial release" 2025-02-26 RCSB #