data_A1L3B # _chem_comp.id A1L3B _chem_comp.name "4-[(2~{S})-1-[[(~{R})-[(3~{S})-7-(1-methylpyrazol-4-yl)-2,3-dihydro-1~{H}-pyrido[2,3-b][1,4]oxazin-3-yl]-phenyl-methyl]amino]propan-2-yl]benzenecarbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-07-26 _chem_comp.pdbx_modified_date 2025-07-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.562 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L3B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IT5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L3B C1 C1 C 0 1 N N N N N N -7.895 -19.978 10.270 3.702 2.371 -1.450 C1 A1L3B 1 A1L3B C2 C2 C 0 1 N N S N N N -8.465 -18.572 10.104 4.176 0.946 -1.159 C2 A1L3B 2 A1L3B C3 C3 C 0 1 N N N N N N -7.380 -17.562 9.710 3.185 0.262 -0.214 C3 A1L3B 3 A1L3B N1 N1 N 0 1 N N N N N N -7.965 -16.259 9.331 1.890 0.111 -0.889 N1 A1L3B 4 A1L3B C4 C4 C 0 1 N N R N N N -6.993 -15.171 9.454 0.911 -0.544 -0.010 C4 A1L3B 5 A1L3B C5 C5 C 0 1 N N S N N N -7.411 -13.987 8.582 -0.503 -0.147 -0.437 C5 A1L3B 6 A1L3B C6 C6 C 0 1 N N N N N N -6.309 -12.926 8.494 -0.664 1.376 -0.335 C6 A1L3B 7 A1L3B N2 N2 N 0 1 N N N N N N -6.810 -11.744 7.818 -2.051 1.702 -0.709 N2 A1L3B 8 A1L3B C7 C7 C 0 1 Y N N N N N -8.129 -11.400 7.893 -3.069 0.870 -0.223 C7 A1L3B 9 A1L3B C8 C8 C 0 1 Y N N N N N -8.595 -10.197 7.374 -4.393 1.271 -0.296 C8 A1L3B 10 A1L3B C9 C9 C 0 1 Y N N N N N -9.944 -9.889 7.486 -5.374 0.405 0.200 C9 A1L3B 11 A1L3B C10 C10 C 0 1 Y N N N N N -10.780 -10.805 8.111 -4.982 -0.815 0.741 C10 A1L3B 12 A1L3B N3 N3 N 0 1 Y N N N N N -10.329 -11.962 8.637 -3.711 -1.159 0.793 N3 A1L3B 13 A1L3B C11 C11 C 0 1 Y N N N N N -9.037 -12.270 8.531 -2.751 -0.368 0.337 C11 A1L3B 14 A1L3B O1 O1 O 0 1 N N N N N N -8.649 -13.458 9.090 -1.457 -0.771 0.426 O1 A1L3B 15 A1L3B C12 C12 C 0 1 Y N N N N N -10.463 -8.634 6.910 -6.809 0.783 0.149 C12 A1L3B 16 A1L3B C13 C13 C 0 1 Y N N N N N -9.708 -7.622 6.289 -7.336 1.981 -0.370 C13 A1L3B 17 A1L3B N4 N4 N 0 1 Y N N N N N -10.467 -6.631 5.840 -8.636 1.944 -0.237 N4 A1L3B 18 A1L3B N5 N5 N 0 1 Y N N N N N -11.740 -6.986 6.192 -8.987 0.730 0.366 N5 A1L3B 19 A1L3B C14 C14 C 0 1 Y N N N N N -11.767 -8.186 6.827 -7.857 0.029 0.591 C14 A1L3B 20 A1L3B C15 C15 C 0 1 N N N N N N -12.854 -6.100 5.855 -10.347 0.294 0.692 C15 A1L3B 21 A1L3B C16 C16 C 0 1 Y N N N N N -6.740 -14.831 10.911 1.066 -2.039 -0.111 C16 A1L3B 22 A1L3B C17 C17 C 0 1 Y N N N N N -5.440 -14.771 11.396 0.965 -2.823 1.023 C17 A1L3B 23 A1L3B C18 C18 C 0 1 Y N N N N N -5.187 -14.474 12.724 1.107 -4.195 0.930 C18 A1L3B 24 A1L3B C19 C19 C 0 1 Y N N N N N -6.233 -14.272 13.589 1.350 -4.783 -0.297 C19 A1L3B 25 A1L3B C20 C20 C 0 1 Y N N N N N -7.532 -14.321 13.124 1.450 -4.000 -1.431 C20 A1L3B 26 A1L3B C21 C21 C 0 1 Y N N N N N -7.785 -14.594 11.791 1.304 -2.628 -1.339 C21 A1L3B 27 A1L3B C22 C22 C 0 1 Y N N N N N -9.203 -18.101 11.344 5.537 0.991 -0.513 C22 A1L3B 28 A1L3B C23 C23 C 0 1 Y N N N N N -8.569 -18.086 12.581 6.610 0.370 -1.125 C23 A1L3B 29 A1L3B C24 C24 C 0 1 Y N N N N N -9.223 -17.661 13.706 7.859 0.407 -0.539 C24 A1L3B 30 A1L3B C25 C25 C 0 1 Y N N N N N -10.525 -17.202 13.619 8.038 1.075 0.674 C25 A1L3B 31 A1L3B C26 C26 C 0 1 Y N N N N N -11.181 -17.197 12.401 6.949 1.701 1.286 C26 A1L3B 32 A1L3B C27 C27 C 0 1 Y N N N N N -10.514 -17.637 11.271 5.708 1.659 0.687 C27 A1L3B 33 A1L3B C28 C28 C 0 1 N N N N N N -11.195 -16.763 14.810 9.331 1.118 1.288 C28 A1L3B 34 A1L3B N6 N6 N 0 1 N N N N N N -11.673 -16.434 15.792 10.356 1.153 1.774 N6 A1L3B 35 A1L3B H1 H1 H 0 1 N N N N N N -8.702 -20.670 10.552 4.407 2.858 -2.123 H1 A1L3B 36 A1L3B H3 H2 H 0 1 N N N N N N -7.445 -20.306 9.321 2.718 2.338 -1.917 H3 A1L3B 37 A1L3B H2 H3 H 0 1 N N N N N N -7.126 -19.971 11.057 3.643 2.932 -0.517 H2 A1L3B 38 A1L3B H4 H4 H 0 1 N N N N N N -9.193 -18.608 9.280 4.235 0.385 -2.091 H4 A1L3B 39 A1L3B H5 H5 H 0 1 N N N N N N -6.702 -17.415 10.564 3.567 -0.720 0.064 H5 A1L3B 40 A1L3B H6 H6 H 0 1 N N N N N N -6.813 -17.961 8.856 3.059 0.870 0.682 H6 A1L3B 41 A1L3B H29 H7 H 0 1 N N N N N N -8.278 -16.308 8.382 1.545 1.001 -1.214 H29 A1L3B 42 A1L3B H8 H9 H 0 1 N N N N N N -6.039 -15.538 9.046 1.081 -0.230 1.020 H8 A1L3B 43 A1L3B H9 H10 H 0 1 N N N N N N -7.583 -14.369 7.565 -0.677 -0.465 -1.465 H9 A1L3B 44 A1L3B H10 H11 H 0 1 N N N N N N -5.983 -12.654 9.509 -0.470 1.701 0.688 H10 A1L3B 45 A1L3B H11 H12 H 0 1 N N N N N N -5.456 -13.333 7.932 0.029 1.868 -1.018 H11 A1L3B 46 A1L3B H12 H13 H 0 1 N N N N N N -6.292 -10.968 8.179 -2.253 2.467 -1.272 H12 A1L3B 47 A1L3B H13 H14 H 0 1 N N N N N N -7.916 -9.511 6.890 -4.660 2.226 -0.723 H13 A1L3B 48 A1L3B H14 H15 H 0 1 N N N N N N -11.834 -10.582 8.179 -5.732 -1.491 1.125 H14 A1L3B 49 A1L3B H15 H16 H 0 1 N N N N N N -8.633 -7.649 6.189 -6.766 2.790 -0.801 H15 A1L3B 50 A1L3B H16 H17 H 0 1 N N N N N N -12.644 -8.695 7.198 -7.793 -0.950 1.042 H16 A1L3B 51 A1L3B H17 H18 H 0 1 N N N N N N -12.471 -5.213 5.329 -10.767 -0.251 -0.154 H17 A1L3B 52 A1L3B H19 H19 H 0 1 N N N N N N -13.564 -6.634 5.206 -10.321 -0.356 1.566 H19 A1L3B 53 A1L3B H18 H20 H 0 1 N N N N N N -13.365 -5.787 6.777 -10.966 1.166 0.905 H18 A1L3B 54 A1L3B H20 H21 H 0 1 N N N N N N -4.614 -14.959 10.727 0.776 -2.363 1.982 H20 A1L3B 55 A1L3B H21 H22 H 0 1 N N N N N N -4.169 -14.401 13.078 1.029 -4.807 1.816 H21 A1L3B 56 A1L3B H22 H23 H 0 1 N N N N N N -6.040 -14.075 14.633 1.462 -5.855 -0.369 H22 A1L3B 57 A1L3B H23 H24 H 0 1 N N N N N N -8.354 -14.146 13.803 1.640 -4.459 -2.390 H23 A1L3B 58 A1L3B H24 H25 H 0 1 N N N N N N -8.804 -14.623 11.434 1.378 -2.016 -2.226 H24 A1L3B 59 A1L3B H25 H26 H 0 1 N N N N N N -7.543 -18.415 12.656 6.471 -0.147 -2.063 H25 A1L3B 60 A1L3B H26 H27 H 0 1 N N N N N N -8.722 -17.684 14.662 8.696 -0.079 -1.018 H26 A1L3B 61 A1L3B H27 H28 H 0 1 N N N N N N -12.203 -16.853 12.333 7.081 2.219 2.224 H27 A1L3B 62 A1L3B H28 H29 H 0 1 N N N N N N -11.019 -17.620 10.316 4.866 2.146 1.157 H28 A1L3B 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L3B C1 C2 SING N N 1 A1L3B C2 C3 SING N N 2 A1L3B C2 C22 SING N N 3 A1L3B C3 N1 SING N N 4 A1L3B N1 C4 SING N N 5 A1L3B C4 C5 SING N N 6 A1L3B C4 C16 SING N N 7 A1L3B C5 C6 SING N N 8 A1L3B C5 O1 SING N N 9 A1L3B C6 N2 SING N N 10 A1L3B N2 C7 SING N N 11 A1L3B C7 C8 DOUB Y N 12 A1L3B C7 C11 SING Y N 13 A1L3B C8 C9 SING Y N 14 A1L3B C9 C10 DOUB Y N 15 A1L3B C9 C12 SING N N 16 A1L3B C10 N3 SING Y N 17 A1L3B N3 C11 DOUB Y N 18 A1L3B C11 O1 SING N N 19 A1L3B C12 C13 SING Y N 20 A1L3B C12 C14 DOUB Y N 21 A1L3B C13 N4 DOUB Y N 22 A1L3B N4 N5 SING Y N 23 A1L3B N5 C14 SING Y N 24 A1L3B N5 C15 SING N N 25 A1L3B C16 C17 DOUB Y N 26 A1L3B C16 C21 SING Y N 27 A1L3B C17 C18 SING Y N 28 A1L3B C18 C19 DOUB Y N 29 A1L3B C19 C20 SING Y N 30 A1L3B C20 C21 DOUB Y N 31 A1L3B C22 C23 DOUB Y N 32 A1L3B C22 C27 SING Y N 33 A1L3B C23 C24 SING Y N 34 A1L3B C24 C25 DOUB Y N 35 A1L3B C25 C26 SING Y N 36 A1L3B C25 C28 SING N N 37 A1L3B C26 C27 DOUB Y N 38 A1L3B C28 N6 TRIP N N 39 A1L3B C1 H1 SING N N 40 A1L3B C1 H3 SING N N 41 A1L3B C1 H2 SING N N 42 A1L3B C2 H4 SING N N 43 A1L3B C3 H5 SING N N 44 A1L3B C3 H6 SING N N 45 A1L3B N1 H29 SING N N 46 A1L3B C4 H8 SING N N 47 A1L3B C5 H9 SING N N 48 A1L3B C6 H10 SING N N 49 A1L3B C6 H11 SING N N 50 A1L3B N2 H12 SING N N 51 A1L3B C8 H13 SING N N 52 A1L3B C10 H14 SING N N 53 A1L3B C13 H15 SING N N 54 A1L3B C14 H16 SING N N 55 A1L3B C15 H17 SING N N 56 A1L3B C15 H19 SING N N 57 A1L3B C15 H18 SING N N 58 A1L3B C17 H20 SING N N 59 A1L3B C18 H21 SING N N 60 A1L3B C19 H22 SING N N 61 A1L3B C20 H23 SING N N 62 A1L3B C21 H24 SING N N 63 A1L3B C23 H25 SING N N 64 A1L3B C24 H26 SING N N 65 A1L3B C26 H27 SING N N 66 A1L3B C27 H28 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L3B InChI InChI 1.06 "InChI=1S/C28H28N6O/c1-19(21-10-8-20(13-29)9-11-21)14-31-27(22-6-4-3-5-7-22)26-17-30-25-12-23(15-32-28(25)35-26)24-16-33-34(2)18-24/h3-12,15-16,18-19,26-27,30-31H,14,17H2,1-2H3/t19-,26+,27-/m1/s1" A1L3B InChIKey InChI 1.06 CMLDQXRCCGCFFB-PGMDNKBISA-N A1L3B SMILES_CANONICAL CACTVS 3.385 "C[C@H](CN[C@@H]([C@@H]1CNc2cc(cnc2O1)c3cnn(C)c3)c4ccccc4)c5ccc(cc5)C#N" A1L3B SMILES CACTVS 3.385 "C[CH](CN[CH]([CH]1CNc2cc(cnc2O1)c3cnn(C)c3)c4ccccc4)c5ccc(cc5)C#N" A1L3B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CN[C@H](c1ccccc1)[C@@H]2CNc3cc(cnc3O2)c4cnn(c4)C)c5ccc(cc5)C#N" A1L3B SMILES "OpenEye OEToolkits" 2.0.7 "CC(CNC(c1ccccc1)C2CNc3cc(cnc3O2)c4cnn(c4)C)c5ccc(cc5)C#N" # _pdbx_chem_comp_identifier.comp_id A1L3B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(2~{S})-1-[[(~{R})-[(3~{S})-7-(1-methylpyrazol-4-yl)-2,3-dihydro-1~{H}-pyrido[2,3-b][1,4]oxazin-3-yl]-phenyl-methyl]amino]propan-2-yl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L3B "Create component" 2024-07-26 PDBJ A1L3B "Initial release" 2025-07-23 RCSB #