data_A1L3F # _chem_comp.id A1L3F _chem_comp.name "(5-chloranylpyridin-2-yl)methanamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H7 Cl N2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-02 _chem_comp.pdbx_modified_date 2025-05-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 142.586 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L3F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IZB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L3F C21 C1 C 0 1 Y N N N N N -9.836 1.812 3.924 0.543 1.153 -0.117 C21 A1L3F 1 A1L3F C22 C2 C 0 1 Y N N N N N -9.230 1.929 2.685 1.276 -0.015 -0.014 C22 A1L3F 2 A1L3F C24 C3 C 0 1 Y N N N N N -9.543 1.075 1.638 0.615 -1.234 -0.060 C24 A1L3F 3 A1L3F C18 C4 C 0 1 N N N N N N -12.085 -1.022 3.510 -2.926 -0.011 -0.472 C18 A1L3F 4 A1L3F C19 C5 C 0 1 Y N N N N N -11.047 0.020 3.143 -1.428 -0.024 -0.308 C19 A1L3F 5 A1L3F C25 C6 C 0 1 Y N N N N N -10.484 0.084 1.878 -0.763 -1.232 -0.211 C25 A1L3F 6 A1L3F N17 N1 N 0 1 N N N Y Y N -12.567 -1.980 2.533 -3.561 0.142 0.844 N17 A1L3F 7 A1L3F N20 N2 N 0 1 Y N N N N N -10.726 0.865 4.118 -0.768 1.116 -0.260 N20 A1L3F 8 A1L3F CL23 CL1 CL 0 0 N N N N N N -8.028 3.212 2.469 3.001 0.044 0.173 CL23 A1L3F 9 A1L3F H1 H1 H 0 1 N N N N N N -9.580 2.492 4.723 1.048 2.106 -0.077 H1 A1L3F 10 A1L3F H2 H2 H 0 1 N N N N N N -9.072 1.178 0.672 1.161 -2.163 0.018 H2 A1L3F 11 A1L3F H3 H3 H 0 1 N N N N N N -12.967 -0.471 3.867 -3.214 0.822 -1.113 H3 A1L3F 12 A1L3F H4 H4 H 0 1 N N N N N N -11.659 -1.608 4.337 -3.251 -0.948 -0.925 H4 A1L3F 13 A1L3F H5 H5 H 0 1 N N N N N N -10.768 -0.614 1.105 -1.310 -2.163 -0.252 H5 A1L3F 14 A1L3F H6 H6 H 0 1 N N N Y Y N -13.243 -2.581 2.960 -4.567 0.154 0.761 H6 A1L3F 15 A1L3F H7 H7 H 0 1 N Y N Y Y N -12.990 -1.493 1.769 -3.259 -0.582 1.478 H7 A1L3F 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L3F C24 C25 DOUB Y N 1 A1L3F C24 C22 SING Y N 2 A1L3F C25 C19 SING Y N 3 A1L3F CL23 C22 SING N N 4 A1L3F N17 C18 SING N N 5 A1L3F C22 C21 DOUB Y N 6 A1L3F C19 C18 SING N N 7 A1L3F C19 N20 DOUB Y N 8 A1L3F C21 N20 SING Y N 9 A1L3F C21 H1 SING N N 10 A1L3F C24 H2 SING N N 11 A1L3F C18 H3 SING N N 12 A1L3F C18 H4 SING N N 13 A1L3F C25 H5 SING N N 14 A1L3F N17 H6 SING N N 15 A1L3F N17 H7 SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L3F InChI InChI 1.06 "InChI=1S/C6H7ClN2/c7-5-1-2-6(3-8)9-4-5/h1-2,4H,3,8H2" A1L3F InChIKey InChI 1.06 KQJKUOYVWLBSDN-UHFFFAOYSA-N A1L3F SMILES_CANONICAL CACTVS 3.385 "NCc1ccc(Cl)cn1" A1L3F SMILES CACTVS 3.385 "NCc1ccc(Cl)cn1" A1L3F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ncc1Cl)CN" A1L3F SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ncc1Cl)CN" # _pdbx_chem_comp_identifier.comp_id A1L3F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5-chloranylpyridin-2-yl)methanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L3F "Create component" 2024-08-02 PDBJ A1L3F "Modify backbone" 2024-09-25 PDBE A1L3F "Modify PCM" 2024-09-27 PDBE A1L3F "Initial release" 2025-05-28 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L3F _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #