data_A1L3J # _chem_comp.id A1L3J _chem_comp.name "(2~{R},3~{R})-3-methyl-2-oxidanyl-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H12 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-06 _chem_comp.pdbx_modified_date 2025-06-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.158 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L3J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9IVC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L3J C41 C1 C 0 1 N N R N Y N 190.708 155.740 159.742 -0.371 -0.498 -0.506 C41 A1L3J 1 A1L3J C42 C2 C 0 1 N N R N N N 191.172 156.573 158.541 0.822 0.155 0.195 C42 A1L3J 2 A1L3J C43 C3 C 0 1 N N N N N N 190.102 156.607 157.443 2.121 -0.462 -0.327 C43 A1L3J 3 A1L3J C44 C4 C 0 1 N N N N N N 188.984 157.585 157.732 3.306 0.101 0.461 C44 A1L3J 4 A1L3J C45 C5 C 0 1 N N N N N N 191.471 157.993 158.992 0.821 1.658 -0.089 C45 A1L3J 5 A1L3J C C6 C 0 1 N N N N Y Y 189.829 154.575 159.292 -1.650 0.109 0.009 C46 A1L3J 6 A1L3J O40 O1 O 0 1 N N N Y Y N 189.956 156.563 160.589 -0.369 -1.902 -0.240 O40 A1L3J 7 A1L3J O O2 O 0 1 N N N N Y Y 188.662 154.694 159.339 -2.435 -0.570 0.628 O47 A1L3J 8 A1L3J H1 H1 H 0 1 N N N N Y N 191.591 155.343 160.264 -0.296 -0.332 -1.581 H1 A1L3J 9 A1L3J H2 H2 H 0 1 N N N N N N 192.089 156.126 158.131 0.748 -0.011 1.270 H2 A1L3J 10 A1L3J H3 H3 H 0 1 N N N N N N 189.670 155.600 157.345 2.084 -1.544 -0.205 H3 A1L3J 11 A1L3J H4 H4 H 0 1 N N N N N N 190.582 156.894 156.496 2.239 -0.219 -1.383 H4 A1L3J 12 A1L3J H5 H5 H 0 1 N N N N N N 188.253 157.561 156.910 3.342 1.183 0.338 H5 A1L3J 13 A1L3J H6 H6 H 0 1 N N N N N N 188.487 157.306 158.673 3.188 -0.142 1.517 H6 A1L3J 14 A1L3J H7 H7 H 0 1 N N N N N N 189.399 158.600 157.824 4.231 -0.339 0.088 H7 A1L3J 15 A1L3J H8 H8 H 0 1 N N N N N N 192.238 157.974 159.780 0.895 1.825 -1.164 H8 A1L3J 16 A1L3J H9 H9 H 0 1 N N N N N N 191.838 158.580 158.137 -0.105 2.098 0.283 H9 A1L3J 17 A1L3J H10 H10 H 0 1 N N N N N N 190.553 158.454 159.385 1.670 2.124 0.410 H10 A1L3J 18 A1L3J H12 H12 H 0 1 N Y N Y Y N 189.046 156.291 160.569 -0.433 -2.125 0.699 H12 A1L3J 19 A1L3J OXT O3 O 0 1 N Y N N Y Y 190.389 153.318 158.804 -1.918 1.405 -0.220 O1 A1L3J 20 A1L3J HXT H11 H 0 1 N Y N N Y Y 189.684 152.725 158.574 -2.751 1.749 0.130 H11 A1L3J 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L3J C43 C44 SING N N 1 A1L3J C43 C42 SING N N 2 A1L3J C42 C45 SING N N 3 A1L3J C42 C41 SING N N 4 A1L3J C O DOUB N N 5 A1L3J C C41 SING N N 6 A1L3J C41 O40 SING N N 7 A1L3J C41 H1 SING N N 8 A1L3J C42 H2 SING N N 9 A1L3J C43 H3 SING N N 10 A1L3J C43 H4 SING N N 11 A1L3J C44 H5 SING N N 12 A1L3J C44 H6 SING N N 13 A1L3J C44 H7 SING N N 14 A1L3J C45 H8 SING N N 15 A1L3J C45 H9 SING N N 16 A1L3J C45 H10 SING N N 17 A1L3J O40 H12 SING N N 18 A1L3J C OXT SING N N 19 A1L3J OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L3J InChI InChI 1.06 "InChI=1S/C6H12O3/c1-3-4(2)5(7)6(8)9/h4-5,7H,3H2,1-2H3,(H,8,9)/t4-,5-/m1/s1" A1L3J InChIKey InChI 1.06 RILPIWOPNGRASR-RFZPGFLSSA-N A1L3J SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](C)[C@@H](O)C(O)=O" A1L3J SMILES CACTVS 3.385 "CC[CH](C)[CH](O)C(O)=O" A1L3J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H](C)[C@H](C(=O)O)O" A1L3J SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id A1L3J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R})-3-methyl-2-oxidanyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L3J "Create component" 2024-08-06 PDBJ A1L3J "Modify backbone" 2024-09-25 PDBE A1L3J "Modify PCM" 2024-09-27 PDBE A1L3J "Initial release" 2025-06-18 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L3J _pdbx_chem_comp_pcm.modified_residue_id DIL _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #