data_A1L3W # _chem_comp.id A1L3W _chem_comp.name streptothrisamine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{Z})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-azanyl-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-21 _chem_comp.pdbx_modified_date 2026-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 374.350 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L3W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9J80 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L3W C10 C1 C 0 1 N N R N N N -50.972 30.928 5.002 3.476 -0.680 0.410 C10 A1L3W 1 A1L3W C15 C2 C 0 1 N N S N N N -49.695 31.653 4.979 2.641 -1.891 -0.017 C15 A1L3W 2 A1L3W C17 C3 C 0 1 N N R N N N -48.908 31.367 3.756 1.534 -1.424 -0.968 C17 A1L3W 3 A1L3W C20 C4 C 0 1 N N S N N N -45.849 27.523 0.592 -3.870 0.165 -0.987 C20 A1L3W 4 A1L3W C21 C5 C 0 1 N N R N N N -45.747 26.574 -0.584 -4.989 1.174 -0.986 C21 A1L3W 5 A1L3W C01 C6 C 0 1 N N S N N N -46.148 26.732 1.873 -3.380 0.050 0.490 C01 A1L3W 6 A1L3W C03 C7 C 0 1 N N N N N N -47.299 28.744 1.912 -1.596 0.020 -0.891 C03 A1L3W 7 A1L3W C05 C8 C 0 1 N N R N N N -48.773 29.861 3.486 0.691 -0.353 -0.270 C05 A1L3W 8 A1L3W C07 C9 C 0 1 N N R N N N -50.791 29.415 4.746 2.558 0.362 1.054 C07 A1L3W 9 A1L3W C08 C10 C 0 1 N N N N N N -52.128 28.744 4.718 3.375 1.600 1.429 C08 A1L3W 10 A1L3W C12 C11 C 0 1 N N N N N N -52.686 32.522 4.421 5.305 0.513 -0.552 C12 A1L3W 11 A1L3W C23 C12 C 0 1 N N N N N N -44.853 25.402 -0.116 -6.011 0.797 0.089 C23 A1L3W 12 A1L3W C25 C13 C 0 1 N N N N N N -44.795 26.196 2.264 -4.440 -0.794 1.142 C25 A1L3W 13 A1L3W N02 N1 N 0 1 N N N N N N -47.038 27.683 2.573 -2.072 -0.559 0.280 N02 A1L3W 14 A1L3W N04 N2 N 0 1 N N N N N N -48.033 29.741 2.196 -0.334 0.139 -1.194 N04 A1L3W 15 A1L3W N13 N3 N 0 1 N N N N N N -53.687 33.133 3.501 5.960 1.070 -1.589 N13 A1L3W 16 A1L3W N18 N4 N 0 1 N N N N N N -47.536 31.949 3.895 0.681 -2.566 -1.326 N18 A1L3W 17 A1L3W N19 N5 N 0 1 N N N N N N -46.691 28.713 0.792 -2.640 0.453 -1.694 N19 A1L3W 18 A1L3W N24 N6 N 0 1 N N N N N N -44.207 25.544 1.211 -5.709 -0.424 0.817 N24 A1L3W 19 A1L3W O06 O1 O 0 1 N N N N N N -50.077 29.183 3.475 1.534 0.730 0.128 O06 A1L3W 20 A1L3W O09 O2 O 0 1 N N N N N N -52.052 27.438 5.377 2.544 2.524 2.134 O09 A1L3W 21 A1L3W O11 O3 O 0 1 N N N N N N -51.846 31.480 3.980 4.125 -0.102 -0.753 O11 A1L3W 22 A1L3W O14 O4 O 0 1 N N N N N N -52.601 32.919 5.527 5.780 0.566 0.566 O14 A1L3W 23 A1L3W O16 O5 O 0 1 N N N N N N -48.886 31.271 6.146 2.056 -2.500 1.137 O16 A1L3W 24 A1L3W O22 O6 O 0 1 N N N N N N -47.006 26.117 -1.010 -4.461 2.473 -0.708 O22 A1L3W 25 A1L3W O26 O7 O 0 1 N N N N N N -44.254 26.299 3.336 -4.189 -1.720 1.884 O26 A1L3W 26 A1L3W H101 H1 H 0 0 N N N N N N -51.441 31.055 5.989 4.231 -0.995 1.130 H101 A1L3W 27 A1L3W H151 H2 H 0 0 N N N N N N -49.897 32.733 5.024 3.279 -2.613 -0.526 H151 A1L3W 28 A1L3W H171 H3 H 0 0 N N N N N N -49.406 31.831 2.892 1.981 -1.006 -1.869 H171 A1L3W 29 A1L3W H201 H4 H 0 0 N N N N N N -44.820 27.884 0.737 -4.256 -0.800 -1.313 H201 A1L3W 30 A1L3W H211 H5 H 0 0 N N N N N N -45.233 27.090 -1.408 -5.474 1.181 -1.962 H211 A1L3W 31 A1L3W H011 H6 H 0 0 N N N N N N -46.761 25.869 1.575 -3.304 1.027 0.967 H011 A1L3W 32 A1L3W H051 H7 H 0 0 N N N N N N -48.154 29.427 4.285 0.211 -0.784 0.609 H051 A1L3W 33 A1L3W H071 H8 H 0 0 N N N N N N -50.200 28.995 5.573 2.103 -0.059 1.951 H071 A1L3W 34 A1L3W H082 H9 H 0 0 N N N N N N -52.444 28.606 3.673 4.210 1.305 2.064 H082 A1L3W 35 A1L3W H081 H10 H 0 0 N N N N N N -52.862 29.374 5.243 3.756 2.072 0.524 H081 A1L3W 36 A1L3W H231 H11 H 0 0 N N N N N N -45.478 24.497 -0.087 -6.077 1.617 0.805 H231 A1L3W 37 A1L3W H232 H12 H 0 0 N N N N N N -44.055 25.273 -0.863 -6.985 0.680 -0.387 H232 A1L3W 38 A1L3W H021 H13 H 0 0 N N N N N N -47.405 27.510 3.487 -1.632 -1.221 0.835 H021 A1L3W 39 A1L3W H131 H14 H 0 0 N N N N N N -54.278 33.872 3.825 5.581 1.028 -2.481 H131 A1L3W 40 A1L3W H132 H15 H 0 0 N N N N N N -53.768 32.804 2.560 6.811 1.514 -1.444 H132 A1L3W 41 A1L3W H182 H16 H 0 0 N N N N N N -47.006 31.755 3.069 -0.057 -2.282 -1.954 H182 A1L3W 42 A1L3W H1 H17 H 0 1 N N N N N N -47.605 32.938 4.022 1.228 -3.314 -1.725 H1 A1L3W 43 A1L3W H191 H19 H 0 0 N N N N N N -46.779 29.436 0.107 -2.561 0.869 -2.566 H191 A1L3W 44 A1L3W H241 H20 H 0 0 N N N N N N -43.300 25.145 1.344 -6.442 -0.996 1.096 H241 A1L3W 45 A1L3W H091 H21 H 0 0 N N N N N N -52.905 27.021 5.354 2.997 3.334 2.404 H091 A1L3W 46 A1L3W H161 H22 H 0 0 N N N N N N -48.061 31.742 6.128 1.513 -3.275 0.940 H161 A1L3W 47 A1L3W H221 H23 H 0 0 N N N N N N -46.897 25.527 -1.746 -5.127 3.173 -0.692 H221 A1L3W 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L3W N02 C01 SING N N 1 A1L3W C03 N02 SING N N 2 A1L3W C05 N04 SING N N 3 A1L3W O06 C05 SING N N 4 A1L3W C07 O06 SING N N 5 A1L3W O09 C08 SING N N 6 A1L3W C08 C07 SING N N 7 A1L3W C10 C07 SING N N 8 A1L3W C12 O11 SING N N 9 A1L3W N13 C12 SING N N 10 A1L3W O14 C12 DOUB N N 11 A1L3W O11 C10 SING N N 12 A1L3W C15 C10 SING N N 13 A1L3W O16 C15 SING N N 14 A1L3W C17 C15 SING N N 15 A1L3W N18 C17 SING N N 16 A1L3W N04 C03 DOUB N N 17 A1L3W N19 C03 SING N N 18 A1L3W C20 N19 SING N N 19 A1L3W C21 C20 SING N N 20 A1L3W O22 C21 SING N N 21 A1L3W C23 C21 SING N N 22 A1L3W N24 C23 SING N N 23 A1L3W C25 N24 SING N N 24 A1L3W O26 C25 DOUB N N 25 A1L3W C01 C20 SING N N 26 A1L3W C01 C25 SING N N 27 A1L3W C05 C17 SING N N 28 A1L3W C10 H101 SING N N 29 A1L3W C15 H151 SING N N 30 A1L3W C17 H171 SING N N 31 A1L3W C20 H201 SING N N 32 A1L3W C21 H211 SING N N 33 A1L3W C01 H011 SING N N 34 A1L3W C05 H051 SING N N 35 A1L3W C07 H071 SING N N 36 A1L3W C08 H082 SING N N 37 A1L3W C08 H081 SING N N 38 A1L3W C23 H231 SING N N 39 A1L3W C23 H232 SING N N 40 A1L3W N02 H021 SING N N 41 A1L3W N13 H131 SING N N 42 A1L3W N13 H132 SING N N 43 A1L3W N18 H182 SING N N 44 A1L3W N18 H1 SING N N 45 A1L3W N19 H191 SING N N 46 A1L3W N24 H241 SING N N 47 A1L3W O09 H091 SING N N 48 A1L3W O16 H161 SING N N 49 A1L3W O22 H221 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L3W InChI InChI 1.06 "InChI=1S/C13H22N6O7/c14-5-8(22)9(26-12(15)24)4(2-20)25-11(5)19-13-17-6-3(21)1-16-10(23)7(6)18-13/h3-9,11,20-22H,1-2,14H2,(H2,15,24)(H,16,23)(H2,17,18,19)/t3-,4-,5-,6-,7+,8+,9+,11-/m1/s1" A1L3W InChIKey InChI 1.06 GQLPHXXLSAMAOV-ATHMYKBOSA-N A1L3W SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1[C@H](O)[C@@H](OC(N)=O)[C@@H](CO)O[C@H]1N=C2N[C@@H]3[C@H](O)CNC(=O)[C@H]3N2" A1L3W SMILES CACTVS 3.385 "N[CH]1[CH](O)[CH](OC(N)=O)[CH](CO)O[CH]1N=C2N[CH]3[CH](O)CNC(=O)[CH]3N2" A1L3W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]2[C@@H](C(=O)N1)N/C(=N\[C@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)OC(=O)N)O)N)/N2)O" A1L3W SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C2C(C(=O)N1)NC(=NC3C(C(C(C(O3)CO)OC(=O)N)O)N)N2)O" # _pdbx_chem_comp_identifier.comp_id A1L3W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{Z})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-azanyl-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L3W "Create component" 2024-08-21 PDBJ A1L3W "Initial release" 2026-04-01 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1L3W _pdbx_chem_comp_synonyms.name "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{Z})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-azanyl-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #