data_A1L3Y # _chem_comp.id A1L3Y _chem_comp.name "~{N}-[2-[2-[2-(2-azanylethoxy)ethoxy]ethoxy]ethyl]-2-[9-(2-azanylethoxy)-2-oxidanylidene-10~{H}-pyrimido[5,4-b][1,4]benzoxazin-3-yl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H32 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-08-22 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.525 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L3Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9J6P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L3Y C10 C1 C 0 1 N N N N N N 12.331 17.652 13.807 -3.805 -0.684 -0.067 C10 A1L3Y 1 A1L3Y C13 C2 C 0 1 N N N N N N 15.832 20.236 14.205 0.003 -2.039 -1.077 C13 A1L3Y 2 A1L3Y C15 C3 C 0 1 N N N N N N 13.393 19.897 13.567 -1.602 -0.201 -0.839 C15 A1L3Y 3 A1L3Y C17 C4 C 0 1 Y N N N N N 8.890 19.366 12.406 -4.804 3.228 -0.969 C17 A1L3Y 4 A1L3Y C20 C5 C 0 1 Y N N N N N 8.796 16.634 13.055 -6.761 1.463 -0.105 C20 A1L3Y 5 A1L3Y C21 C6 C 0 1 N N N N N N 8.232 14.889 14.627 -9.068 1.079 0.329 C21 A1L3Y 6 A1L3Y C22 C7 C 0 1 N N N N N N 8.214 13.306 14.776 -10.000 -0.026 0.832 C22 A1L3Y 7 A1L3Y C01 C8 C 0 1 N N N N N N 20.026 19.129 19.092 6.341 -2.434 -0.474 C01 A1L3Y 8 A1L3Y C02 C9 C 0 1 N N N N N N 19.554 17.889 18.261 6.897 -1.413 -1.470 C02 A1L3Y 9 A1L3Y C03 C10 C 0 1 N N N N N N 22.502 17.550 16.414 8.940 3.141 0.975 C03 A1L3Y 10 A1L3Y C06 C11 C 0 1 N N N N N N 19.079 17.352 15.884 7.592 0.872 -1.660 C06 A1L3Y 11 A1L3Y C07 C12 C 0 1 N N N N N N 18.812 21.141 18.294 4.419 -2.924 0.872 C07 A1L3Y 12 A1L3Y C08 C13 C 0 1 N N N N N N 20.482 17.207 15.157 7.740 2.167 -0.857 C08 A1L3Y 13 A1L3Y C09 C14 C 0 1 Y N N N N N 10.043 17.370 13.222 -5.432 1.064 -0.140 C09 A1L3Y 14 A1L3Y C11 C15 C 0 1 N N N N N N 14.597 18.046 14.352 -2.272 -2.392 -0.294 C11 A1L3Y 15 A1L3Y C12 C16 C 0 1 Y N N N N N 10.030 18.756 12.879 -4.448 1.948 -0.572 C12 A1L3Y 16 A1L3Y C14 C17 C 0 1 N N N N N N 15.953 20.495 15.731 0.889 -2.009 0.141 C14 A1L3Y 17 A1L3Y C16 C18 C 0 1 N N N N N N 12.309 19.100 13.452 -2.839 0.247 -0.512 C16 A1L3Y 18 A1L3Y C18 C19 C 0 1 Y N N N N N 7.732 18.649 12.257 -6.129 3.623 -0.932 C18 A1L3Y 19 A1L3Y C19 C20 C 0 1 Y N N N N N 7.671 17.295 12.572 -7.107 2.747 -0.503 C19 A1L3Y 20 A1L3Y C23 C21 C 0 1 N N N N N N 17.325 21.315 17.812 3.029 -2.399 1.239 C23 A1L3Y 21 A1L3Y N02 N1 N 0 1 N N N N N N 9.447 12.658 14.303 -9.686 -0.330 2.234 N02 A1L3Y 22 A1L3Y N03 N2 N 0 1 N N N N N N 11.290 16.816 13.714 -5.069 -0.236 0.257 N03 A1L3Y 23 A1L3Y N04 N3 N 0 1 N N N N N N 13.590 17.193 14.265 -3.493 -1.966 0.030 N04 A1L3Y 24 A1L3Y N05 N4 N 0 1 N N N N N N 14.625 19.403 14.019 -1.328 -1.537 -0.726 N05 A1L3Y 25 A1L3Y N06 N5 N 0 1 N N N N N N 17.135 21.041 16.350 2.167 -2.428 0.055 N06 A1L3Y 26 A1L3Y O01 O1 O 0 1 N N N N N N 21.449 16.662 16.034 8.724 1.985 0.163 O01 A1L3Y 27 A1L3Y O02 O2 O 0 1 N N N N N N 19.059 18.331 16.953 7.074 -0.156 -0.814 O02 A1L3Y 28 A1L3Y O03 O3 O 0 1 N N N N N N 18.927 20.043 19.212 5.032 -2.034 -0.063 O03 A1L3Y 29 A1L3Y O05 O4 O 0 1 N N N N N N 11.124 19.604 12.997 -3.145 1.566 -0.607 O05 A1L3Y 30 A1L3Y O06 O5 O 0 1 N N N N N N 15.790 17.628 14.798 -2.006 -3.579 -0.197 O06 A1L3Y 31 A1L3Y O07 O6 O 0 1 N N N N N N 15.001 20.218 16.434 0.453 -1.608 1.199 O07 A1L3Y 32 A1L3Y O08 O7 O 0 1 N N N N N N 8.650 15.284 13.329 -7.722 0.599 0.319 O08 A1L3Y 33 A1L3Y H1 H1 H 0 1 N N N N N N 16.722 19.704 13.837 0.434 -1.410 -1.856 H1 A1L3Y 34 A1L3Y H2 H2 H 0 1 N N N N N N 15.724 21.188 13.665 -0.080 -3.063 -1.442 H2 A1L3Y 35 A1L3Y H3 H3 H 0 1 N N N N N N 13.309 20.941 13.304 -0.844 0.487 -1.185 H3 A1L3Y 36 A1L3Y H5 H5 H 0 1 N N N N N N 8.909 20.415 12.151 -4.046 3.919 -1.308 H5 A1L3Y 37 A1L3Y H6 H6 H 0 1 N N N N N N 8.926 15.310 15.370 -9.358 1.366 -0.682 H6 A1L3Y 38 A1L3Y H7 H7 H 0 1 N N N N N N 7.219 15.277 14.810 -9.141 1.944 0.988 H7 A1L3Y 39 A1L3Y H8 H8 H 0 1 N N N N N N 7.368 12.911 14.194 -11.034 0.309 0.755 H8 A1L3Y 40 A1L3Y H9 H9 H 0 1 N N N N N N 8.076 13.058 15.839 -9.862 -0.922 0.226 H9 A1L3Y 41 A1L3Y H10 H10 H 0 1 N N N N N N 20.349 18.804 20.092 6.289 -3.414 -0.949 H10 A1L3Y 42 A1L3Y H11 H11 H 0 1 N N N N N N 20.864 19.622 18.578 6.995 -2.486 0.396 H11 A1L3Y 43 A1L3Y H12 H12 H 0 1 N N N N N N 18.748 17.372 18.802 7.856 -1.763 -1.850 H12 A1L3Y 44 A1L3Y H13 H13 H 0 1 N N N N N N 20.400 17.201 18.118 6.198 -1.296 -2.298 H13 A1L3Y 45 A1L3Y H14 H14 H 0 1 N N N N N N 22.359 18.580 16.772 9.276 3.967 0.348 H14 A1L3Y 46 A1L3Y H15 H15 H 0 1 N N N N N N 23.555 17.259 16.545 8.010 3.415 1.471 H15 A1L3Y 47 A1L3Y H17 H17 H 0 1 N N N N N N 18.331 17.646 15.133 6.908 1.037 -2.492 H17 A1L3Y 48 A1L3Y H18 H18 H 0 1 N N N N N N 18.808 16.374 16.308 8.566 0.570 -2.045 H18 A1L3Y 49 A1L3Y H19 H19 H 0 1 N N N N N N 19.454 20.950 17.421 5.033 -2.986 1.770 H19 A1L3Y 50 A1L3Y H20 H20 H 0 1 N N N N N N 19.139 22.065 18.794 4.327 -3.914 0.425 H20 A1L3Y 51 A1L3Y H21 H21 H 0 1 N N N N N N 20.370 16.544 14.287 8.050 2.973 -1.522 H21 A1L3Y 52 A1L3Y H22 H22 H 0 1 N N N N N N 20.818 18.199 14.821 6.784 2.421 -0.399 H22 A1L3Y 53 A1L3Y H23 H23 H 0 1 N N N N N N 6.847 19.146 11.887 -6.402 4.621 -1.243 H23 A1L3Y 54 A1L3Y H24 H24 H 0 1 N N N N N N 6.745 16.754 12.441 -8.139 3.061 -0.476 H24 A1L3Y 55 A1L3Y H25 H25 H 0 1 N N N N N N 17.011 22.349 18.016 2.598 -3.028 2.018 H25 A1L3Y 56 A1L3Y H26 H26 H 0 1 N N N N N N 16.691 20.620 18.382 3.112 -1.375 1.604 H26 A1L3Y 57 A1L3Y H27 H27 H 0 1 N N N N N N 9.371 11.668 14.424 -9.744 0.500 2.806 H27 A1L3Y 58 A1L3Y H28 H28 H 0 1 N N N N N N 9.582 12.866 13.334 -10.288 -1.057 2.590 H28 A1L3Y 59 A1L3Y H31 H31 H 0 1 N N N N N N 17.902 21.258 15.746 2.517 -2.749 -0.791 H31 A1L3Y 60 A1L3Y C04 C04 C 0 1 N N N N N N ? ? ? 10.008 2.832 2.027 C04 A1L3Y 61 A1L3Y N01 N01 N 0 1 N N N N N N ? ? ? 11.292 2.579 1.361 N01 A1L3Y 62 A1L3Y H29 H29 H 0 1 N N N N N N ? ? ? 10.109 3.683 2.701 H29 A1L3Y 63 A1L3Y H32 H32 H 0 1 N N N N N N ? ? ? 9.713 1.951 2.596 H32 A1L3Y 64 A1L3Y H33 H33 H 0 1 N N N N N N ? ? ? 11.556 3.357 0.775 H33 A1L3Y 65 A1L3Y H34 H34 H 0 1 N N N N N N ? ? ? 12.014 2.373 2.035 H34 A1L3Y 66 A1L3Y H4 H4 H 0 1 N N N N N N 11.368 15.853 13.972 -5.690 -0.801 0.744 H4 A1L3Y 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L3Y C18 C17 SING Y N 1 A1L3Y C18 C19 DOUB Y N 2 A1L3Y C17 C12 DOUB Y N 3 A1L3Y C19 C20 SING Y N 4 A1L3Y C12 O05 SING N N 5 A1L3Y C12 C09 SING Y N 6 A1L3Y O05 C16 SING N N 7 A1L3Y C20 C09 DOUB Y N 8 A1L3Y C20 O08 SING N N 9 A1L3Y C09 N03 SING N N 10 A1L3Y O08 C21 SING N N 11 A1L3Y C16 C15 DOUB N N 12 A1L3Y C16 C10 SING N N 13 A1L3Y C15 N05 SING N N 14 A1L3Y N03 C10 SING N N 15 A1L3Y C10 N04 DOUB N N 16 A1L3Y N05 C13 SING N N 17 A1L3Y N05 C11 SING N N 18 A1L3Y C13 C14 SING N N 19 A1L3Y N04 C11 SING N N 20 A1L3Y N02 C22 SING N N 21 A1L3Y C11 O06 DOUB N N 22 A1L3Y C21 C22 SING N N 23 A1L3Y C08 C06 SING N N 24 A1L3Y C08 O01 SING N N 25 A1L3Y C14 N06 SING N N 26 A1L3Y C14 O07 DOUB N N 27 A1L3Y C06 O02 SING N N 28 A1L3Y O01 C03 SING N N 29 A1L3Y N06 C23 SING N N 30 A1L3Y O02 C02 SING N N 31 A1L3Y C23 C07 SING N N 32 A1L3Y C02 C01 SING N N 33 A1L3Y C07 O03 SING N N 34 A1L3Y C01 O03 SING N N 35 A1L3Y C13 H1 SING N N 36 A1L3Y C13 H2 SING N N 37 A1L3Y C15 H3 SING N N 38 A1L3Y C17 H5 SING N N 39 A1L3Y C21 H6 SING N N 40 A1L3Y C21 H7 SING N N 41 A1L3Y C22 H8 SING N N 42 A1L3Y C22 H9 SING N N 43 A1L3Y C01 H10 SING N N 44 A1L3Y C01 H11 SING N N 45 A1L3Y C02 H12 SING N N 46 A1L3Y C02 H13 SING N N 47 A1L3Y C03 H14 SING N N 48 A1L3Y C03 H15 SING N N 49 A1L3Y C06 H17 SING N N 50 A1L3Y C06 H18 SING N N 51 A1L3Y C07 H19 SING N N 52 A1L3Y C07 H20 SING N N 53 A1L3Y C08 H21 SING N N 54 A1L3Y C08 H22 SING N N 55 A1L3Y C18 H23 SING N N 56 A1L3Y C19 H24 SING N N 57 A1L3Y C23 H25 SING N N 58 A1L3Y C23 H26 SING N N 59 A1L3Y N02 H27 SING N N 60 A1L3Y N02 H28 SING N N 61 A1L3Y N06 H31 SING N N 62 A1L3Y C03 C04 SING N N 63 A1L3Y C04 N01 SING N N 64 A1L3Y C04 H29 SING N N 65 A1L3Y C04 H32 SING N N 66 A1L3Y N01 H33 SING N N 67 A1L3Y N01 H34 SING N N 68 A1L3Y N03 H4 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L3Y InChI InChI 1.06 "InChI=1S/C22H32N6O7/c23-4-7-31-10-12-33-13-11-32-9-6-25-19(29)15-28-14-18-21(27-22(28)30)26-20-16(34-8-5-24)2-1-3-17(20)35-18/h1-3,14H,4-13,15,23-24H2,(H,25,29)(H,26,27,30)" A1L3Y InChIKey InChI 1.06 IOPVLKFMUHLRKC-UHFFFAOYSA-N A1L3Y SMILES_CANONICAL CACTVS 3.385 "NCCOCCOCCOCCNC(=O)CN1C=C2Oc3cccc(OCCN)c3NC2=NC1=O" A1L3Y SMILES CACTVS 3.385 "NCCOCCOCCOCCNC(=O)CN1C=C2Oc3cccc(OCCN)c3NC2=NC1=O" A1L3Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)OCCN)NC3=NC(=O)N(C=C3O2)CC(=O)NCCOCCOCCOCCN" A1L3Y SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)OCCN)NC3=NC(=O)N(C=C3O2)CC(=O)NCCOCCOCCOCCN" # _pdbx_chem_comp_identifier.comp_id A1L3Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[2-[2-[2-(2-azanylethoxy)ethoxy]ethoxy]ethyl]-2-[9-(2-azanylethoxy)-2-oxidanylidene-10~{H}-pyrimido[5,4-b][1,4]benzoxazin-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L3Y "Create component" 2024-08-22 PDBJ A1L3Y "Initial release" 2025-01-15 RCSB #