data_A1L4D # _chem_comp.id A1L4D _chem_comp.name "(2~{S})-2-benzamido-3-phenyl-propanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H15 N O3" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-25 _chem_comp.pdbx_modified_date 2025-04-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.295 _chem_comp.one_letter_code F _chem_comp.three_letter_code A1L4D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9JBL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L4D C C1 C 0 1 N N N N Y Y -0.054 -2.710 0.136 0.995 2.829 -0.263 C A1L4D 1 A1L4D O O1 O 0 1 N N N N Y Y -1.232 -2.868 0.466 -0.039 3.242 -0.732 O A1L4D 2 A1L4D CA C2 C 0 1 N N S N Y N 0.436 -3.152 -1.242 1.144 1.364 0.057 CA A1L4D 3 A1L4D CB C3 C 0 1 N N N N N N -0.331 -2.412 -2.338 2.305 0.781 -0.751 CB A1L4D 4 A1L4D CG C4 C 0 1 Y N N N N N -0.204 -0.908 -2.292 2.534 -0.651 -0.340 CG A1L4D 5 A1L4D CD1 C5 C 0 1 Y N N N N N -0.969 -0.147 -1.435 1.870 -1.672 -0.994 CD1 A1L4D 6 A1L4D CE1 C6 C 0 1 Y N N N N N -0.870 1.233 -1.406 2.079 -2.986 -0.618 CE1 A1L4D 7 A1L4D CZ C7 C 0 1 Y N N N N N -0.003 1.870 -2.271 2.953 -3.278 0.413 CZ A1L4D 8 A1L4D CE2 C8 C 0 1 Y N N N N N 0.793 1.124 -3.104 3.617 -2.257 1.067 CE2 A1L4D 9 A1L4D CD2 C9 C 0 1 Y N N N N N 0.687 -0.251 -3.103 3.412 -0.944 0.687 CD2 A1L4D 10 A1L4D N N1 N 0 1 N N N Y Y N 0.243 -4.591 -1.385 -0.093 0.660 -0.288 N A1L4D 11 A1L4D C10 C10 C 0 1 N N N N N N 1.219 -5.385 -1.808 -1.112 0.616 0.593 C10 A1L4D 12 A1L4D O4 O2 O 0 1 N N N N N N 2.358 -4.974 -2.019 -1.004 1.161 1.674 O4 A1L4D 13 A1L4D C11 C11 C 0 1 Y N N N N N 0.892 -6.822 -2.073 -2.361 -0.095 0.245 C11 A1L4D 14 A1L4D C12 C12 C 0 1 Y N N N N N 1.652 -7.493 -3.009 -2.486 -0.727 -0.993 C12 A1L4D 15 A1L4D C13 C13 C 0 1 Y N N N N N 1.388 -8.823 -3.311 -3.653 -1.389 -1.312 C13 A1L4D 16 A1L4D C14 C14 C 0 1 Y N N N N N 0.379 -9.472 -2.667 -4.700 -1.426 -0.407 C14 A1L4D 17 A1L4D C15 C15 C 0 1 Y N N N N N -0.380 -8.808 -1.724 -4.582 -0.802 0.822 C15 A1L4D 18 A1L4D C16 C16 C 0 1 Y N N N N N -0.139 -7.484 -1.420 -3.418 -0.142 1.155 C16 A1L4D 19 A1L4D HA H2 H 0 1 N N N N Y N 1.505 -2.910 -1.333 1.346 1.244 1.122 H2 A1L4D 20 A1L4D HB2 H3 H 0 1 N N N N N N -1.396 -2.669 -2.244 2.065 0.820 -1.813 H3 A1L4D 21 A1L4D HB3 H4 H 0 1 N N N N N N 0.045 -2.758 -3.312 3.208 1.362 -0.561 H4 A1L4D 22 A1L4D HD1 H5 H 0 1 N N N N N N -1.663 -0.640 -0.770 1.187 -1.444 -1.799 H5 A1L4D 23 A1L4D HE1 H6 H 0 1 N N N N N N -1.466 1.807 -0.712 1.560 -3.783 -1.128 H6 A1L4D 24 A1L4D HZ H7 H 0 1 N N N N N N 0.049 2.949 -2.292 3.116 -4.304 0.707 H7 A1L4D 25 A1L4D HE2 H8 H 0 1 N N N N N N 1.500 1.612 -3.758 4.303 -2.486 1.869 H8 A1L4D 26 A1L4D HD2 H9 H 0 1 N N N N N N 1.323 -0.827 -3.759 3.931 -0.147 1.197 H9 A1L4D 27 A1L4D H H10 H 0 1 N Y N Y Y N -0.646 -4.989 -1.159 -0.179 0.224 -1.151 H10 A1L4D 28 A1L4D H11 H11 H 0 1 N N N N N N 2.459 -6.980 -3.511 -1.670 -0.697 -1.701 H11 A1L4D 29 A1L4D H12 H12 H 0 1 N N N N N N 1.980 -9.339 -4.052 -3.751 -1.878 -2.270 H12 A1L4D 30 A1L4D H13 H13 H 0 1 N N N N N N 0.172 -10.507 -2.894 -5.612 -1.946 -0.662 H13 A1L4D 31 A1L4D H14 H14 H 0 1 N N N N N N -1.175 -9.333 -1.216 -5.403 -0.835 1.523 H14 A1L4D 32 A1L4D H15 H15 H 0 1 N N N N N N -0.743 -6.971 -0.686 -3.326 0.342 2.117 H15 A1L4D 33 A1L4D OXT OXT O 0 1 N Y N N Y Y 0.860 -2.125 0.895 2.012 3.673 -0.034 OXT A1L4D 34 A1L4D HXT H1 H 0 1 N Y N N Y N 0.465 -1.855 1.716 1.871 4.603 -0.259 H1 A1L4D 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L4D C13 C12 DOUB Y N 1 A1L4D C13 C14 SING Y N 2 A1L4D CE2 CD2 DOUB Y N 3 A1L4D CE2 CZ SING Y N 4 A1L4D CD2 CG SING Y N 5 A1L4D C12 C11 SING Y N 6 A1L4D C14 C15 DOUB Y N 7 A1L4D CB CG SING N N 8 A1L4D CB CA SING N N 9 A1L4D CG CD1 DOUB Y N 10 A1L4D CZ CE1 DOUB Y N 11 A1L4D C11 C10 SING N N 12 A1L4D C11 C16 DOUB Y N 13 A1L4D O4 C10 DOUB N N 14 A1L4D C10 N SING N N 15 A1L4D C15 C16 SING Y N 16 A1L4D CD1 CE1 SING Y N 17 A1L4D N CA SING N N 18 A1L4D CA C SING N N 19 A1L4D C O DOUB N N 20 A1L4D CA HA SING N N 21 A1L4D CB HB2 SING N N 22 A1L4D CB HB3 SING N N 23 A1L4D CD1 HD1 SING N N 24 A1L4D CE1 HE1 SING N N 25 A1L4D CZ HZ SING N N 26 A1L4D CE2 HE2 SING N N 27 A1L4D CD2 HD2 SING N N 28 A1L4D N H SING N N 29 A1L4D C12 H11 SING N N 30 A1L4D C13 H12 SING N N 31 A1L4D C14 H13 SING N N 32 A1L4D C15 H14 SING N N 33 A1L4D C16 H15 SING N N 34 A1L4D C OXT SING N N 35 A1L4D OXT HXT SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L4D InChI InChI 1.06 "InChI=1S/C16H15NO3/c18-15(13-9-5-2-6-10-13)17-14(16(19)20)11-12-7-3-1-4-8-12/h1-10,14H,11H2,(H,17,18)(H,19,20)/t14-/m0/s1" A1L4D InChIKey InChI 1.06 NPKISZUVEBESJI-AWEZNQCLSA-N A1L4D SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H](Cc1ccccc1)NC(=O)c2ccccc2" A1L4D SMILES CACTVS 3.385 "OC(=O)[CH](Cc1ccccc1)NC(=O)c2ccccc2" A1L4D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](C(=O)O)NC(=O)c2ccccc2" A1L4D SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)O)NC(=O)c2ccccc2" # _pdbx_chem_comp_identifier.comp_id A1L4D _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-benzamido-3-phenyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L4D "Create component" 2024-09-25 PDBJ A1L4D "Modify PCM" 2024-10-03 PDBE A1L4D "Initial release" 2025-04-09 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L4D _pdbx_chem_comp_pcm.modified_residue_id PHE _pdbx_chem_comp_pcm.type Benzoylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #