data_A1L4Z # _chem_comp.id A1L4Z _chem_comp.name "2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]propanedioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-10-15 _chem_comp.pdbx_modified_date 2025-07-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.203 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L4Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9JX7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L4Z OAN O1 O 0 1 N N N N N N 32.820 -34.643 -39.691 4.135 2.267 -1.184 OAN A1L4Z 1 A1L4Z PAL P1 P 0 1 N N N N N N 31.867 -35.094 -38.555 4.421 1.377 -0.037 PAL A1L4Z 2 A1L4Z OAO O2 O 0 1 N N N N N N 30.416 -34.574 -38.909 5.915 0.792 -0.171 OAO A1L4Z 3 A1L4Z OAM O3 O 0 1 N N N N N N 31.918 -36.508 -38.088 4.292 2.210 1.335 OAM A1L4Z 4 A1L4Z OAK O4 O 0 1 N N N N N N 32.283 -34.237 -37.131 3.366 0.160 -0.026 OAK A1L4Z 5 A1L4Z CAJ C1 C 0 1 N N N N N N 32.680 -32.852 -37.440 1.951 0.356 -0.022 CAJ A1L4Z 6 A1L4Z CAH C2 C 0 1 Y N N N N N 33.421 -32.437 -36.153 1.258 -0.982 -0.012 CAH A1L4Z 7 A1L4Z CAG C3 C 0 1 Y N N N N N 32.819 -31.555 -35.283 1.992 -2.150 -0.002 CAG A1L4Z 8 A1L4Z NAF N1 N 0 1 Y N N N N N 33.442 -31.096 -34.128 1.398 -3.327 0.007 NAF A1L4Z 9 A1L4Z CAE C4 C 0 1 Y N N N N N 34.641 -31.562 -33.753 0.087 -3.451 0.007 CAE A1L4Z 10 A1L4Z CAP C5 C 0 1 N N N N N N 35.284 -31.065 -32.545 -0.532 -4.825 0.018 CAP A1L4Z 11 A1L4Z CAD C6 C 0 1 Y N N N N N 35.303 -32.413 -34.655 -0.732 -2.331 -0.002 CAD A1L4Z 12 A1L4Z OAI O5 O 0 1 N N N N N N 36.489 -32.939 -34.304 -2.083 -2.463 -0.000 OAI A1L4Z 13 A1L4Z CAC C7 C 0 1 Y N N N N N 34.688 -32.904 -35.840 -0.139 -1.057 -0.007 CAC A1L4Z 14 A1L4Z CAB C8 C 0 1 N N N N N N 35.498 -33.778 -36.670 -0.966 0.165 -0.011 CAB A1L4Z 15 A1L4Z N N2 N 0 1 N N N N N N 36.750 -33.099 -37.159 -2.256 0.074 -0.005 N A1L4Z 16 A1L4Z CA C9 C 0 1 N N N N N N 37.695 -33.825 -38.044 -3.076 1.287 -0.009 CA A1L4Z 17 A1L4Z CAU C10 C 0 1 N N N N N N 39.199 -33.360 -37.816 -3.951 1.299 -1.237 CAU A1L4Z 18 A1L4Z OAW O6 O 0 1 N N N N N N 40.054 -33.611 -38.721 -3.894 0.387 -2.027 OAW A1L4Z 19 A1L4Z OAV O7 O 0 1 N N N N N N 39.387 -32.627 -36.805 -4.792 2.322 -1.452 OAV A1L4Z 20 A1L4Z C C11 C 0 1 N N N N N N 37.386 -33.627 -39.548 -3.942 1.313 1.224 C A1L4Z 21 A1L4Z OXT O8 O 0 1 N N N N N N 38.076 -34.427 -40.333 -3.880 0.410 2.024 OXT A1L4Z 22 A1L4Z O O9 O 0 1 N N N N N N 36.889 -32.494 -39.895 -4.782 2.338 1.434 O A1L4Z 23 A1L4Z H1 H1 H 0 1 N N N N N N 30.441 -34.102 -39.733 6.603 1.470 -0.184 H1 A1L4Z 24 A1L4Z H2 H2 H 0 1 N N N N N N 32.575 -36.982 -38.583 4.467 1.689 2.130 H2 A1L4Z 25 A1L4Z H3 H3 H 0 1 N N N N N N 33.346 -32.813 -38.315 1.665 0.920 0.866 H3 A1L4Z 26 A1L4Z H4 H4 H 0 1 N N N N N N 31.801 -32.215 -37.619 1.659 0.910 -0.914 H4 A1L4Z 27 A1L4Z H5 H5 H 0 1 N N N N N N 31.822 -31.206 -35.507 3.071 -2.099 -0.003 H5 A1L4Z 28 A1L4Z H6 H6 H 0 1 N N N N N N 34.639 -30.312 -32.069 -0.681 -5.148 1.049 H6 A1L4Z 29 A1L4Z H7 H7 H 0 1 N N N N N N 35.449 -31.900 -31.848 -1.492 -4.795 -0.496 H7 A1L4Z 30 A1L4Z H8 H8 H 0 1 N N N N N N 36.250 -30.608 -32.805 0.131 -5.525 -0.489 H8 A1L4Z 31 A1L4Z H9 H9 H 0 1 N N N N N N 36.792 -32.531 -33.502 -2.474 -2.494 0.884 H9 A1L4Z 32 A1L4Z H10 H10 H 0 1 N N N N N N 35.233 -34.797 -36.909 -0.494 1.137 -0.018 H10 A1L4Z 33 A1L4Z H14 H14 H 0 1 N N N N N N 37.640 -34.901 -37.821 -2.429 2.164 -0.017 H14 A1L4Z 34 A1L4Z H15 H15 H 0 1 N N N N N N 40.274 -32.286 -36.821 -5.333 2.285 -2.253 H15 A1L4Z 35 A1L4Z H16 H16 H 0 1 N N N N N N 37.096 -32.322 -40.806 -5.317 2.310 2.239 H16 A1L4Z 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L4Z OXT C DOUB N N 1 A1L4Z O C SING N N 2 A1L4Z OAN PAL DOUB N N 3 A1L4Z C CA SING N N 4 A1L4Z OAO PAL SING N N 5 A1L4Z OAW CAU DOUB N N 6 A1L4Z PAL OAM SING N N 7 A1L4Z PAL OAK SING N N 8 A1L4Z CA CAU SING N N 9 A1L4Z CA N SING N N 10 A1L4Z CAU OAV SING N N 11 A1L4Z CAJ OAK SING N N 12 A1L4Z CAJ CAH SING N N 13 A1L4Z N CAB DOUB N N 14 A1L4Z CAB CAC SING N N 15 A1L4Z CAH CAC DOUB Y N 16 A1L4Z CAH CAG SING Y N 17 A1L4Z CAC CAD SING Y N 18 A1L4Z CAG NAF DOUB Y N 19 A1L4Z CAD OAI SING N N 20 A1L4Z CAD CAE DOUB Y N 21 A1L4Z NAF CAE SING Y N 22 A1L4Z CAE CAP SING N N 23 A1L4Z OAO H1 SING N N 24 A1L4Z OAM H2 SING N N 25 A1L4Z CAJ H3 SING N N 26 A1L4Z CAJ H4 SING N N 27 A1L4Z CAG H5 SING N N 28 A1L4Z CAP H6 SING N N 29 A1L4Z CAP H7 SING N N 30 A1L4Z CAP H8 SING N N 31 A1L4Z OAI H9 SING N N 32 A1L4Z CAB H10 SING N N 33 A1L4Z CA H14 SING N N 34 A1L4Z OAV H15 SING N N 35 A1L4Z O H16 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L4Z InChI InChI 1.06 "InChI=1S/C11H13N2O9P/c1-5-9(14)7(3-13-8(10(15)16)11(17)18)6(2-12-5)4-22-23(19,20)21/h2-3,8,14H,4H2,1H3,(H,15,16)(H,17,18)(H2,19,20,21)/b13-3+" A1L4Z InChIKey InChI 1.06 NZWIGLKAYRQNJI-QLKAYGNNSA-N A1L4Z SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NC(C(O)=O)C(O)=O)c1O" A1L4Z SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NC(C(O)=O)C(O)=O)c1O" A1L4Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/C(C(=O)O)C(=O)O)O" A1L4Z SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(C(=O)O)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id A1L4Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]propanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L4Z "Create component" 2024-10-15 PDBJ A1L4Z "Initial release" 2025-07-16 RCSB #