data_A1L53 # _chem_comp.id A1L53 _chem_comp.name "N-[4-[4-amino-6-ethynyl-5-(3-quinolyl)pyrrolo[2,3-d]pyrimidin-7-yl]norbornan-1-yl]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H24 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "~{N}-[4-(4-azanyl-6-ethynyl-5-quinolin-3-yl-pyrrolo[2,3-d]pyrimidin-7-yl)-1-bicyclo[2.2.1]heptanyl]pyrimidine-5-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-18 _chem_comp.pdbx_modified_date 2025-09-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L53 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KL4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L53 C2 C1 C 0 1 Y N N N N N 54.501 -1.249 -22.258 -3.660 -2.961 -0.077 C2 A1L53 1 A1L53 C4 C2 C 0 1 Y N N N N N 54.110 -1.512 -19.991 -2.058 -4.606 -0.297 C4 A1L53 2 A1L53 C6 C3 C 0 1 Y N N N N N 52.800 0.079 -21.092 -1.299 -2.442 -0.094 C6 A1L53 3 A1L53 C7 C4 C 0 1 Y N N N N N 53.476 -0.246 -22.299 -2.634 -2.007 -0.008 C7 A1L53 4 A1L53 C8 C5 C 0 1 Y N N N N N 52.870 0.623 -23.323 -2.589 -0.549 0.142 C8 A1L53 5 A1L53 C12 C6 C 0 1 Y N N N N N 53.424 0.727 -27.539 -5.916 2.011 0.618 C12 A1L53 6 A1L53 C15 C7 C 0 1 Y N N N N N 53.095 -1.666 -29.007 -6.522 3.934 -1.296 C15 A1L53 7 A1L53 C16 C8 C 0 1 Y N N N N N 52.925 -1.696 -27.642 -5.444 3.126 -1.500 C16 A1L53 8 A1L53 C17 C9 C 0 1 Y N N N N N 53.085 -0.515 -26.880 -5.116 2.150 -0.544 C17 A1L53 9 A1L53 C18 C10 C 0 1 Y N N N N N 52.912 -0.521 -25.476 -4.006 1.306 -0.716 C18 A1L53 10 A1L53 C19 C11 C 0 1 Y N N N N N 51.894 1.376 -22.694 -1.250 -0.200 0.138 C19 A1L53 11 A1L53 C21 C12 C 0 1 N N N N N N 50.430 3.115 -23.979 -0.317 2.222 0.362 C21 A1L53 12 A1L53 N22 N1 N 0 1 Y N N N N N 51.855 1.055 -21.345 -0.490 -1.341 -0.004 N22 A1L53 13 A1L53 C23 C13 C 0 1 N N N N N N 50.948 1.689 -20.359 0.974 -1.371 -0.051 C23 A1L53 14 A1L53 C24 C14 C 0 1 N N N N N N 49.454 1.275 -20.484 1.602 -1.910 -1.372 C24 A1L53 15 A1L53 C27 C15 C 0 1 N N N N N N 50.327 3.649 -18.920 3.139 -1.630 1.083 C27 A1L53 16 A1L53 C31 C16 C 0 1 N N N N N N 48.840 2.438 -15.996 5.531 0.009 -0.052 C31 A1L53 17 A1L53 C33 C17 C 0 1 Y N N N N N 48.938 2.354 -14.505 6.632 0.994 0.017 C33 A1L53 18 A1L53 C34 C18 C 0 1 Y N N N N N 48.110 3.159 -13.673 6.367 2.360 0.166 C34 A1L53 19 A1L53 C36 C19 C 0 1 Y N N N N N 49.075 2.223 -11.771 8.626 2.777 0.141 C36 A1L53 20 A1L53 C38 C20 C 0 1 Y N N N N N 49.840 1.475 -13.841 7.968 0.585 -0.060 C38 A1L53 21 A1L53 N1 N2 N 0 1 N N N N N N 55.248 -1.597 -23.359 -4.987 -2.581 -0.003 N1 A1L53 22 A1L53 N3 N3 N 0 1 Y N N N N N 54.795 -1.850 -21.092 -3.324 -4.240 -0.220 N3 A1L53 23 A1L53 N5 N4 N 0 1 Y N N N N N 53.171 -0.585 -19.982 -1.064 -3.746 -0.237 N5 A1L53 24 A1L53 C9 C21 C 0 1 Y N N N N N 53.111 0.683 -24.782 -3.743 0.365 0.272 C9 A1L53 25 A1L53 C10 C22 C 0 1 Y N N N N N 53.423 1.884 -25.506 -4.585 0.290 1.396 C10 A1L53 26 A1L53 N11 N5 N 0 1 Y N N N N N 53.576 1.871 -26.825 -5.613 1.086 1.536 N11 A1L53 27 A1L53 C13 C23 C 0 1 Y N N N N N 53.586 0.706 -28.938 -7.022 2.861 0.790 C13 A1L53 28 A1L53 C14 C24 C 0 1 Y N N N N N 53.416 -0.465 -29.650 -7.309 3.798 -0.155 C14 A1L53 29 A1L53 C20 C25 C 0 1 N N N N N N 51.063 2.336 -23.378 -0.737 1.131 0.261 C20 A1L53 30 A1L53 C25 C26 C 0 1 N N N N N N 48.819 1.672 -19.126 3.050 -1.368 -1.367 C25 A1L53 31 A1L53 C26 C27 C 0 1 N N N N N N 49.987 2.272 -18.275 3.160 -0.552 -0.043 C26 A1L53 32 A1L53 C28 C28 C 0 1 N N N N N N 50.958 3.262 -20.298 1.676 -2.187 1.077 C28 A1L53 33 A1L53 C29 C29 C 0 1 N N N N N N 51.156 1.386 -18.835 1.701 0.012 0.096 C29 A1L53 34 A1L53 N30 N6 N 0 1 N N N N N N 49.937 2.224 -16.792 4.251 0.424 0.025 N30 A1L53 35 A1L53 O32 O1 O 0 1 N N N N N N 47.740 2.687 -16.468 5.780 -1.174 -0.176 O32 A1L53 36 A1L53 N35 N7 N 0 1 Y N N N N N 48.211 3.062 -12.343 7.382 3.205 0.223 N35 A1L53 37 A1L53 N37 N8 N 0 1 Y N N N N N 49.874 1.445 -12.503 8.920 1.499 0.005 N37 A1L53 38 A1L53 H1 H1 H 0 1 N N N N N N 54.337 -2.023 -19.067 -1.829 -5.655 -0.413 H1 A1L53 39 A1L53 H2 H2 H 0 1 N N N N N N 52.980 -2.572 -29.584 -6.773 4.683 -2.031 H2 A1L53 40 A1L53 H3 H3 H 0 1 N N N N N N 52.669 -2.623 -27.151 -4.846 3.235 -2.393 H3 A1L53 41 A1L53 H4 H4 H 0 1 N N N N N N 52.635 -1.425 -24.954 -3.376 1.386 -1.590 H4 A1L53 42 A1L53 H5 H5 H 0 1 N N N N N N 49.856 3.821 -24.524 0.059 3.199 0.452 H5 A1L53 43 A1L53 H6 H6 H 0 1 N N N N N N 48.970 1.815 -21.311 1.605 -3.000 -1.375 H6 A1L53 44 A1L53 H7 H7 H 0 1 N N N N N N 49.365 0.192 -20.652 1.057 -1.529 -2.236 H7 A1L53 45 A1L53 H8 H8 H 0 1 N N N N N N 51.046 4.206 -18.301 3.845 -2.429 0.858 H8 A1L53 46 A1L53 H9 H9 H 0 1 N N N N N N 49.418 4.253 -19.060 3.373 -1.178 2.047 H9 A1L53 47 A1L53 H10 H10 H 0 1 N N N N N N 47.403 3.846 -14.114 5.350 2.718 0.234 H10 A1L53 48 A1L53 H11 H11 H 0 1 N N N N N N 49.129 2.172 -10.694 9.431 3.496 0.191 H11 A1L53 49 A1L53 H12 H12 H 0 1 N N N N N N 50.494 0.835 -14.414 8.217 -0.460 -0.171 H12 A1L53 50 A1L53 H13 H13 H 0 1 N N N N N N 55.929 -2.281 -23.098 -5.687 -3.250 -0.055 H13 A1L53 51 A1L53 H14 H14 H 0 1 N N N N N N 54.647 -1.976 -24.063 -5.219 -1.645 0.102 H14 A1L53 52 A1L53 H15 H15 H 0 1 N N N N N N 53.535 2.814 -24.968 -4.377 -0.443 2.162 H15 A1L53 53 A1L53 H16 H16 H 0 1 N N N N N N 53.846 1.615 -29.459 -7.643 2.770 1.669 H16 A1L53 54 A1L53 H17 H17 H 0 1 N N N N N N 53.533 -0.454 -30.724 -8.158 4.451 -0.015 H17 A1L53 55 A1L53 H18 H18 H 0 1 N N N N N N 48.029 2.422 -19.276 3.764 -2.191 -1.366 H18 A1L53 56 A1L53 H19 H19 H 0 1 N N N N N N 48.395 0.788 -18.627 3.216 -0.720 -2.228 H19 A1L53 57 A1L53 H20 H20 H 0 1 N N N N N N 51.989 3.640 -20.365 1.186 -2.012 2.034 H20 A1L53 58 A1L53 H21 H21 H 0 1 N N N N N N 50.360 3.679 -21.122 1.672 -3.250 0.835 H21 A1L53 59 A1L53 H22 H22 H 0 1 N N N N N N 51.020 0.320 -18.600 1.467 0.687 -0.727 H22 A1L53 60 A1L53 H23 H23 H 0 1 N N N N N N 52.141 1.719 -18.475 1.509 0.474 1.065 H23 A1L53 61 A1L53 H24 H24 H 0 1 N N N N N N 50.795 2.013 -16.323 4.052 1.368 0.124 H24 A1L53 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L53 C14 C15 DOUB Y N 1 A1L53 C14 C13 SING Y N 2 A1L53 C15 C16 SING Y N 3 A1L53 C13 C12 DOUB Y N 4 A1L53 C16 C17 DOUB Y N 5 A1L53 C12 C17 SING Y N 6 A1L53 C12 N11 SING Y N 7 A1L53 C17 C18 SING Y N 8 A1L53 N11 C10 DOUB Y N 9 A1L53 C10 C9 SING Y N 10 A1L53 C18 C9 DOUB Y N 11 A1L53 C9 C8 SING N N 12 A1L53 C21 C20 TRIP N N 13 A1L53 C20 C19 SING N N 14 A1L53 N1 C2 SING N N 15 A1L53 C8 C19 DOUB Y N 16 A1L53 C8 C7 SING Y N 17 A1L53 C19 N22 SING Y N 18 A1L53 C7 C2 DOUB Y N 19 A1L53 C7 C6 SING Y N 20 A1L53 C2 N3 SING Y N 21 A1L53 N22 C6 SING Y N 22 A1L53 N22 C23 SING N N 23 A1L53 N3 C4 DOUB Y N 24 A1L53 C6 N5 DOUB Y N 25 A1L53 C24 C23 SING N N 26 A1L53 C24 C25 SING N N 27 A1L53 C23 C28 SING N N 28 A1L53 C23 C29 SING N N 29 A1L53 C28 C27 SING N N 30 A1L53 C4 N5 SING Y N 31 A1L53 C25 C26 SING N N 32 A1L53 C27 C26 SING N N 33 A1L53 C29 C26 SING N N 34 A1L53 C26 N30 SING N N 35 A1L53 N30 C31 SING N N 36 A1L53 O32 C31 DOUB N N 37 A1L53 C31 C33 SING N N 38 A1L53 C33 C38 DOUB Y N 39 A1L53 C33 C34 SING Y N 40 A1L53 C38 N37 SING Y N 41 A1L53 C34 N35 DOUB Y N 42 A1L53 N37 C36 DOUB Y N 43 A1L53 N35 C36 SING Y N 44 A1L53 C4 H1 SING N N 45 A1L53 C15 H2 SING N N 46 A1L53 C16 H3 SING N N 47 A1L53 C18 H4 SING N N 48 A1L53 C21 H5 SING N N 49 A1L53 C24 H6 SING N N 50 A1L53 C24 H7 SING N N 51 A1L53 C27 H8 SING N N 52 A1L53 C27 H9 SING N N 53 A1L53 C34 H10 SING N N 54 A1L53 C36 H11 SING N N 55 A1L53 C38 H12 SING N N 56 A1L53 N1 H13 SING N N 57 A1L53 N1 H14 SING N N 58 A1L53 C10 H15 SING N N 59 A1L53 C13 H16 SING N N 60 A1L53 C14 H17 SING N N 61 A1L53 C25 H18 SING N N 62 A1L53 C25 H19 SING N N 63 A1L53 C28 H20 SING N N 64 A1L53 C28 H21 SING N N 65 A1L53 C29 H22 SING N N 66 A1L53 C29 H23 SING N N 67 A1L53 N30 H24 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L53 InChI InChI 1.06 "InChI=1S/C29H24N8O/c1-2-22-23(19-11-18-5-3-4-6-21(18)33-14-19)24-25(30)34-17-35-26(24)37(22)29-9-7-28(15-29,8-10-29)36-27(38)20-12-31-16-32-13-20/h1,3-6,11-14,16-17H,7-10,15H2,(H,36,38)(H2,30,34,35)/t28-,29+" A1L53 InChIKey InChI 1.06 JTIOULFGKCXQAT-ISILISOKSA-N A1L53 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(c(C#C)c(c3cnc4ccccc4c3)c12)C56CCC(CC5)(C6)NC(=O)c7cncnc7" A1L53 SMILES CACTVS 3.385 "Nc1ncnc2n(c(C#C)c(c3cnc4ccccc4c3)c12)C56CCC(CC5)(C6)NC(=O)c7cncnc7" A1L53 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#Cc1c(c2c(ncnc2n1C34CCC(C3)(CC4)NC(=O)c5cncnc5)N)c6cc7ccccc7nc6" A1L53 SMILES "OpenEye OEToolkits" 2.0.7 "C#Cc1c(c2c(ncnc2n1C34CCC(C3)(CC4)NC(=O)c5cncnc5)N)c6cc7ccccc7nc6" # _pdbx_chem_comp_identifier.comp_id A1L53 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-(4-azanyl-6-ethynyl-5-quinolin-3-yl-pyrrolo[2,3-d]pyrimidin-7-yl)-1-bicyclo[2.2.1]heptanyl]pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L53 "Create component" 2024-11-18 PDBJ A1L53 "Initial release" 2025-09-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1L53 _pdbx_chem_comp_synonyms.name "~{N}-[4-(4-azanyl-6-ethynyl-5-quinolin-3-yl-pyrrolo[2,3-d]pyrimidin-7-yl)-1-bicyclo[2.2.1]heptanyl]pyrimidine-5-carboxamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #