data_A1L58 # _chem_comp.id A1L58 _chem_comp.name "~{N}-[(2~{S})-1-[[6-(1-methylpiperidin-4-yl)oxypyridin-3-yl]amino]-1-oxidanylidene-hexan-2-yl]-3-(pyridin-4-ylamino)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-22 _chem_comp.pdbx_modified_date 2025-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 516.635 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L58 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KLC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L58 C11 C1 C 0 1 N N S N N N -8.078 12.188 120.563 0.400 1.447 0.398 C11 A1L58 1 A1L58 C12 C2 C 0 1 N N N N N N -8.341 10.833 119.774 0.543 2.758 -0.378 C12 A1L58 2 A1L58 C13 C3 C 0 1 N N N N N N -9.785 10.683 119.239 1.827 3.469 0.053 C13 A1L58 3 A1L58 C14 C4 C 0 1 N N N N N N -10.042 9.376 118.437 1.970 4.779 -0.723 C14 A1L58 4 A1L58 C21 C5 C 0 1 Y N N N N N -2.494 11.059 123.455 -4.632 -1.154 -0.009 C21 A1L58 5 A1L58 C22 C6 C 0 1 Y N N N N N -1.567 11.507 122.517 -5.733 -0.347 -0.267 C22 A1L58 6 A1L58 C29 C7 C 0 1 N N N N N N -0.850 14.306 124.573 -9.625 -1.960 -0.864 C29 A1L58 7 A1L58 C30 C8 C 0 1 N N N N N N -0.385 13.881 123.156 -9.072 -0.742 -1.608 C30 A1L58 8 A1L58 C33 C9 C 0 1 Y N N N N N -11.453 15.564 119.748 3.584 -1.246 -0.720 C33 A1L58 9 A1L58 C34 C10 C 0 1 Y N N N N N -12.137 16.553 119.052 4.613 -2.097 -1.071 C34 A1L58 10 A1L58 C01 C11 C 0 1 Y N N N N N -11.288 21.898 117.557 9.677 -1.298 -1.568 C01 A1L58 11 A1L58 C02 C12 C 0 1 Y N N N N N -10.985 20.589 117.922 8.499 -1.042 -0.899 C02 A1L58 12 A1L58 C03 C13 C 0 1 Y N N N N N -9.827 19.962 117.410 8.453 -1.216 0.484 C03 A1L58 13 A1L58 C05 C14 C 0 1 Y N N N N N -10.068 17.594 118.397 6.043 -1.055 0.556 C05 A1L58 14 A1L58 C06 C15 C 0 1 Y N N N N N -9.391 16.584 119.106 5.014 -0.199 0.919 C06 A1L58 15 A1L58 C07 C16 C 0 1 Y N N N N N -10.061 15.560 119.802 3.779 -0.289 0.277 C07 A1L58 16 A1L58 C08 C17 C 0 1 N N N N N N -9.321 14.469 120.546 2.680 0.627 0.650 C08 A1L58 17 A1L58 C15 C18 C 0 1 N N N N N N -11.453 9.294 117.853 3.254 5.490 -0.291 C15 A1L58 18 A1L58 C16 C19 C 0 1 N N N N N N -6.481 12.370 120.648 -0.923 0.807 0.064 C16 A1L58 19 A1L58 C19 C20 C 0 1 Y N N N N N -4.334 11.640 121.947 -3.304 0.823 0.122 C19 A1L58 20 A1L58 C20 C21 C 0 1 Y N N N N N -3.857 11.128 123.161 -3.396 -0.565 0.192 C20 A1L58 21 A1L58 C24 C22 C 0 1 N N N N N N 0.548 12.652 123.000 -8.043 -0.033 -0.723 C24 A1L58 22 A1L58 C25 C23 C 0 1 N N N N N N 1.426 12.549 124.233 -8.707 0.366 0.598 C25 A1L58 23 A1L58 C26 C24 C 0 1 N N N N N N 0.650 12.530 125.531 -9.270 -0.884 1.278 C26 A1L58 24 A1L58 C28 C25 C 0 1 N N N N N N -1.099 13.522 126.909 -10.913 -2.650 1.066 C28 A1L58 25 A1L58 C32 C26 C 0 1 Y N N N N N -3.297 12.058 121.052 -4.445 1.564 -0.146 C32 A1L58 26 A1L58 C35 C27 C 0 1 Y N N N N N -11.469 17.555 118.381 5.838 -2.005 -0.438 C35 A1L58 27 A1L58 C36 C28 C 0 1 Y N N N N N -9.032 20.735 116.549 9.610 -1.644 1.135 C36 A1L58 28 A1L58 C37 C29 C 0 1 Y N N N N N -9.415 22.041 116.242 10.748 -1.878 0.393 C37 A1L58 29 A1L58 N04 N1 N 0 1 N N N N N N -9.398 18.634 117.702 7.282 -0.969 1.196 N04 A1L58 30 A1L58 N10 N2 N 0 1 N N N N N N -8.797 13.312 119.909 1.488 0.539 0.028 N10 A1L58 31 A1L58 N18 N3 N 0 1 N N N N N N -5.726 11.696 121.645 -2.073 1.464 0.319 N18 A1L58 32 A1L58 N27 N4 N 0 1 N N N N N N -0.159 13.749 125.782 -10.250 -1.526 0.392 N27 A1L58 33 A1L58 N31 N5 N 0 1 Y N N N N N -1.984 11.998 121.299 -5.608 0.968 -0.327 N31 A1L58 34 A1L58 N38 N6 N 0 1 Y N N N N N -10.531 22.632 116.734 10.750 -1.706 -0.916 N38 A1L58 35 A1L58 O09 O1 O 0 1 N N N N N N -9.162 14.579 121.763 2.852 1.461 1.519 O09 A1L58 36 A1L58 O17 O2 O 0 1 N N N N N N -5.933 13.072 119.813 -0.954 -0.298 -0.434 O17 A1L58 37 A1L58 O23 O3 O 0 1 N N N N N N -0.196 11.431 122.797 -6.950 -0.915 -0.461 O23 A1L58 38 A1L58 H1 H1 H 0 1 N N N N N N -8.456 12.063 121.588 0.445 1.651 1.468 H1 A1L58 39 A1L58 H2 H2 H 0 1 N N N N N N -8.135 9.992 120.453 0.587 2.545 -1.446 H2 A1L58 40 A1L58 H3 H3 H 0 1 N N N N N N -7.650 10.791 118.919 -0.315 3.398 -0.171 H3 A1L58 41 A1L58 H4 H4 H 0 1 N N N N N N -9.998 11.538 118.580 1.783 3.682 1.122 H4 A1L58 42 A1L58 H5 H5 H 0 1 N N N N N N -10.473 10.701 120.097 2.684 2.828 -0.154 H5 A1L58 43 A1L58 H6 H6 H 0 1 N N N N N N -9.892 8.518 119.109 2.014 4.566 -1.791 H6 A1L58 44 A1L58 H7 H7 H 0 1 N N N N N N -9.318 9.325 117.610 1.113 5.420 -0.515 H7 A1L58 45 A1L58 H8 H8 H 0 1 N N N N N N -2.161 10.661 124.402 -4.740 -2.227 0.038 H8 A1L58 46 A1L58 H9 H9 H 0 1 N N N N N N -0.752 15.400 124.626 -10.368 -2.459 -1.486 H9 A1L58 47 A1L58 H10 H10 H 0 1 N N N N N N 0.143 14.742 122.720 -8.595 -1.066 -2.533 H10 A1L58 48 A1L58 H11 H11 H 0 1 N N N N N N -12.008 14.788 120.254 2.629 -1.319 -1.220 H11 A1L58 49 A1L58 H12 H12 H 0 1 N N N N N N -13.217 16.536 119.036 4.460 -2.837 -1.842 H12 A1L58 50 A1L58 H13 H13 H 0 1 N N N N N N -12.184 22.346 117.961 9.722 -1.166 -2.638 H13 A1L58 51 A1L58 H14 H14 H 0 1 N N N N N N -11.636 20.053 118.597 7.624 -0.712 -1.439 H14 A1L58 52 A1L58 H15 H15 H 0 1 N N N N N N -8.311 16.595 119.117 5.170 0.540 1.691 H15 A1L58 53 A1L58 H16 H16 H 0 1 N N N N N N -11.568 8.350 117.301 3.356 6.424 -0.844 H16 A1L58 54 A1L58 H17 H17 H 0 1 N N N N N N -12.190 9.333 118.669 3.210 5.703 0.777 H17 A1L58 55 A1L58 H18 H18 H 0 1 N N N N N N -11.617 10.140 117.170 4.111 4.850 -0.499 H18 A1L58 56 A1L58 H19 H19 H 0 1 N N N N N N -4.568 10.775 123.894 -2.524 -1.167 0.400 H19 A1L58 57 A1L58 H20 H20 H 0 1 N N N N N N 1.196 12.830 122.129 -7.679 0.859 -1.231 H20 A1L58 58 A1L58 H21 H21 H 0 1 N N N N N N 2.013 11.621 124.165 -7.968 0.833 1.250 H21 A1L58 59 A1L58 H22 H22 H 0 1 N N N N N N 2.107 13.413 124.248 -9.516 1.069 0.401 H22 A1L58 60 A1L58 H23 H23 H 0 1 N N N N N N -0.029 11.665 125.513 -8.458 -1.581 1.487 H23 A1L58 61 A1L58 H24 H24 H 0 1 N N N N N N 1.366 12.417 126.358 -9.756 -0.602 2.212 H24 A1L58 62 A1L58 H25 H25 H 0 1 N N N N N N -0.549 13.115 127.770 -10.178 -3.424 1.291 H25 A1L58 63 A1L58 H26 H26 H 0 1 N N N N N N -1.569 14.475 127.192 -11.367 -2.301 1.994 H26 A1L58 64 A1L58 H27 H27 H 0 1 N N N N N N -1.876 12.808 126.600 -11.685 -3.060 0.415 H27 A1L58 65 A1L58 H28 H28 H 0 1 N N N N N N -3.602 12.456 120.095 -4.383 2.641 -0.202 H28 A1L58 66 A1L58 H29 H29 H 0 1 N N N N N N -12.025 18.309 117.844 6.641 -2.670 -0.720 H29 A1L58 67 A1L58 H30 H30 H 0 1 N N N N N N -8.129 20.321 116.126 9.614 -1.790 2.205 H30 A1L58 68 A1L58 H31 H31 H 0 1 N N N N N N -8.787 22.613 115.575 11.649 -2.208 0.888 H31 A1L58 69 A1L58 H32 H32 H 0 1 N N N N N N -8.486 18.400 117.366 7.327 -0.737 2.137 H32 A1L58 70 A1L58 H33 H33 H 0 1 N N N N N N -8.925 13.248 118.919 1.351 -0.126 -0.665 H33 A1L58 71 A1L58 H34 H34 H 0 1 N N N N N N -6.288 11.147 122.263 -2.048 2.379 0.639 H34 A1L58 72 A1L58 H35 H35 H 0 1 N N N N N N -1.911 14.029 124.657 -8.811 -2.651 -0.645 H35 A1L58 73 A1L58 H36 H36 H 0 1 N N N N N N -1.292 13.672 122.570 -9.887 -0.057 -1.840 H36 A1L58 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L58 C37 C36 DOUB Y N 1 A1L58 C37 N38 SING Y N 2 A1L58 C36 C03 SING Y N 3 A1L58 N38 C01 DOUB Y N 4 A1L58 C03 N04 SING N N 5 A1L58 C03 C02 DOUB Y N 6 A1L58 C01 C02 SING Y N 7 A1L58 N04 C05 SING N N 8 A1L58 C15 C14 SING N N 9 A1L58 C35 C05 DOUB Y N 10 A1L58 C35 C34 SING Y N 11 A1L58 C05 C06 SING Y N 12 A1L58 C14 C13 SING N N 13 A1L58 C34 C33 DOUB Y N 14 A1L58 C06 C07 DOUB Y N 15 A1L58 C13 C12 SING N N 16 A1L58 C33 C07 SING Y N 17 A1L58 C12 C11 SING N N 18 A1L58 C07 C08 SING N N 19 A1L58 O17 C16 DOUB N N 20 A1L58 N10 C08 SING N N 21 A1L58 N10 C11 SING N N 22 A1L58 C08 O09 DOUB N N 23 A1L58 C11 C16 SING N N 24 A1L58 C16 N18 SING N N 25 A1L58 C32 N31 DOUB Y N 26 A1L58 C32 C19 SING Y N 27 A1L58 N31 C22 SING Y N 28 A1L58 N18 C19 SING N N 29 A1L58 C19 C20 DOUB Y N 30 A1L58 C22 O23 SING N N 31 A1L58 C22 C21 DOUB Y N 32 A1L58 O23 C24 SING N N 33 A1L58 C24 C30 SING N N 34 A1L58 C24 C25 SING N N 35 A1L58 C30 C29 SING N N 36 A1L58 C20 C21 SING Y N 37 A1L58 C25 C26 SING N N 38 A1L58 C29 N27 SING N N 39 A1L58 C26 N27 SING N N 40 A1L58 N27 C28 SING N N 41 A1L58 C11 H1 SING N N 42 A1L58 C12 H2 SING N N 43 A1L58 C12 H3 SING N N 44 A1L58 C13 H4 SING N N 45 A1L58 C13 H5 SING N N 46 A1L58 C14 H6 SING N N 47 A1L58 C14 H7 SING N N 48 A1L58 C21 H8 SING N N 49 A1L58 C29 H9 SING N N 50 A1L58 C30 H10 SING N N 51 A1L58 C33 H11 SING N N 52 A1L58 C34 H12 SING N N 53 A1L58 C01 H13 SING N N 54 A1L58 C02 H14 SING N N 55 A1L58 C06 H15 SING N N 56 A1L58 C15 H16 SING N N 57 A1L58 C15 H17 SING N N 58 A1L58 C15 H18 SING N N 59 A1L58 C20 H19 SING N N 60 A1L58 C24 H20 SING N N 61 A1L58 C25 H21 SING N N 62 A1L58 C25 H22 SING N N 63 A1L58 C26 H23 SING N N 64 A1L58 C26 H24 SING N N 65 A1L58 C28 H25 SING N N 66 A1L58 C28 H26 SING N N 67 A1L58 C28 H27 SING N N 68 A1L58 C32 H28 SING N N 69 A1L58 C35 H29 SING N N 70 A1L58 C36 H30 SING N N 71 A1L58 C37 H31 SING N N 72 A1L58 N04 H32 SING N N 73 A1L58 N10 H33 SING N N 74 A1L58 N18 H34 SING N N 75 A1L58 C29 H35 SING N N 76 A1L58 C30 H36 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L58 InChI InChI 1.06 "InChI=1S/C29H36N6O3/c1-3-4-8-26(34-28(36)21-6-5-7-23(19-21)32-22-11-15-30-16-12-22)29(37)33-24-9-10-27(31-20-24)38-25-13-17-35(2)18-14-25/h5-7,9-12,15-16,19-20,25-26H,3-4,8,13-14,17-18H2,1-2H3,(H,30,32)(H,33,37)(H,34,36)/t26-/m0/s1" A1L58 InChIKey InChI 1.06 AGGUHEVKATZJAQ-SANMLTNESA-N A1L58 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H](NC(=O)c1cccc(Nc2ccncc2)c1)C(=O)Nc3ccc(OC4CCN(C)CC4)nc3" A1L58 SMILES CACTVS 3.385 "CCCC[CH](NC(=O)c1cccc(Nc2ccncc2)c1)C(=O)Nc3ccc(OC4CCN(C)CC4)nc3" A1L58 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C(=O)Nc1ccc(nc1)OC2CCN(CC2)C)NC(=O)c3cccc(c3)Nc4ccncc4" A1L58 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(C(=O)Nc1ccc(nc1)OC2CCN(CC2)C)NC(=O)c3cccc(c3)Nc4ccncc4" # _pdbx_chem_comp_identifier.comp_id A1L58 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-1-[[6-(1-methylpiperidin-4-yl)oxypyridin-3-yl]amino]-1-oxidanylidene-hexan-2-yl]-3-(pyridin-4-ylamino)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L58 "Create component" 2024-11-22 PDBJ A1L58 "Initial release" 2025-05-21 RCSB #