data_A1L5J # _chem_comp.id A1L5J _chem_comp.name "[(2~{E})-3,7-dimethylocta-2,6-dienyl] [(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl] hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H27 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-06 _chem_comp.pdbx_modified_date 2026-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.344 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L5J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KDI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L5J O13 O1 O 0 1 N N N N N N 95.502 121.552 148.627 3.730 1.525 -2.350 O13 A1L5J 1 A1L5J C16 C1 C 0 1 N N N N N N 96.221 121.265 143.447 -2.963 -1.299 0.682 C16 A1L5J 2 A1L5J C18 C2 C 0 1 N N N N N N 96.525 123.339 142.000 -5.381 -1.007 0.513 C18 A1L5J 3 A1L5J C19 C3 C 0 1 N N N N N N 95.879 123.915 140.729 -5.689 0.186 -0.396 C19 A1L5J 4 A1L5J C21 C4 C 0 1 N N N N N N 97.839 124.389 139.264 -7.019 2.079 0.384 C21 A1L5J 5 A1L5J C22 C5 C 0 1 N N N N N N 98.864 125.241 138.453 -5.736 2.861 0.497 C22 A1L5J 6 A1L5J C33 C6 C 0 1 N N N N N N 98.219 122.880 139.076 -8.337 2.747 0.680 C33 A1L5J 7 A1L5J C05 C7 C 0 1 N N S N N N 93.491 120.827 147.283 3.148 0.129 -0.430 C05 A1L5J 8 A1L5J C06 C8 C 0 1 N N R N N N 94.100 121.948 148.230 3.590 1.523 -0.928 C06 A1L5J 9 A1L5J C07 C9 C 0 1 N N S N N N 93.284 122.074 149.195 4.959 1.747 -0.249 C07 A1L5J 10 A1L5J C08 C10 C 0 1 N N R N N N 92.131 120.853 148.995 5.183 0.463 0.579 C08 A1L5J 11 A1L5J C09 C11 C 0 1 N N N N N N 90.825 121.299 149.530 5.866 0.797 1.907 C09 A1L5J 12 A1L5J C15 C12 C 0 1 N N N N N N 95.668 119.805 143.346 -1.663 -1.932 0.257 C15 A1L5J 13 A1L5J C17 C13 C 0 1 N N N N N N 96.097 121.894 142.267 -4.081 -1.639 0.089 C17 A1L5J 14 A1L5J C20 C14 C 0 1 N N N N N N 96.824 124.925 139.990 -6.989 0.818 0.029 C20 A1L5J 15 A1L5J C34 C15 C 0 1 N N N N N N 95.486 121.276 141.000 -4.066 -2.662 -1.018 C34 A1L5J 16 A1L5J O01 O2 O 0 1 N N N N N N 92.923 120.854 143.450 1.426 -2.266 0.602 O01 A1L5J 17 A1L5J O03 O3 O 0 1 N N N N N N 92.392 119.109 145.084 0.876 -1.789 -1.815 O03 A1L5J 18 A1L5J O04 O4 O 0 1 N N N N N N 93.484 121.301 145.958 1.737 0.104 -0.206 O04 A1L5J 19 A1L5J O10 O5 O 0 1 N N N N N N 90.355 122.338 148.764 6.169 -0.413 2.605 O10 A1L5J 20 A1L5J O11 O6 O 0 1 N N N N N N 92.039 120.674 147.751 3.858 -0.061 0.814 O11 A1L5J 21 A1L5J O12 O7 O 0 1 N N N N N N 93.910 121.960 150.513 5.987 1.895 -1.231 O12 A1L5J 22 A1L5J O14 O8 O 0 1 N N N N N N 94.905 119.518 144.507 -0.659 -0.922 0.136 O14 A1L5J 23 A1L5J P02 P1 P 0 1 N N N N N N 93.382 120.189 144.724 0.857 -1.241 -0.301 P02 A1L5J 24 A1L5J H1 H1 H 0 1 N N N N N N 95.871 122.219 149.194 2.911 1.329 -2.826 H1 A1L5J 25 A1L5J H2 H2 H 0 1 N N N N N N 96.643 121.705 144.339 -2.974 -0.566 1.474 H2 A1L5J 26 A1L5J H4 H4 H 0 1 N N N N N N 97.619 123.368 141.885 -5.300 -0.666 1.545 H4 A1L5J 27 A1L5J H5 H5 H 0 1 N N N N N N 96.230 123.960 142.859 -6.185 -1.740 0.434 H5 A1L5J 28 A1L5J H6 H6 H 0 1 N N N N N N 94.952 124.437 141.008 -4.886 0.919 -0.317 H6 A1L5J 29 A1L5J H7 H7 H 0 1 N N N N N N 95.642 123.086 140.045 -5.770 -0.155 -1.428 H7 A1L5J 30 A1L5J H8 H8 H 0 1 N N N N N N 98.624 126.309 138.565 -5.459 3.249 -0.484 H8 A1L5J 31 A1L5J H9 H9 H 0 1 N N N N N N 99.879 125.052 138.832 -5.875 3.690 1.190 H9 A1L5J 32 A1L5J H10 H10 H 0 1 N N N N N N 98.812 124.963 137.390 -4.944 2.208 0.866 H10 A1L5J 33 A1L5J H11 H11 H 0 1 N N N N N N 97.513 122.251 139.637 -9.146 2.029 0.547 H11 A1L5J 34 A1L5J H12 H12 H 0 1 N N N N N N 98.172 122.621 138.008 -8.338 3.108 1.709 H12 A1L5J 35 A1L5J H13 H13 H 0 1 N N N N N N 99.239 122.710 139.450 -8.480 3.587 0.000 H13 A1L5J 36 A1L5J H14 H14 H 0 1 N N N N N N 94.046 119.885 147.401 3.432 -0.639 -1.150 H14 A1L5J 37 A1L5J H15 H15 H 0 1 N N N N N N 94.165 122.871 147.635 2.876 2.284 -0.614 H15 A1L5J 38 A1L5J H16 H16 H 0 1 N N N N N N 92.735 123.026 149.144 4.924 2.622 0.401 H16 A1L5J 39 A1L5J H17 H17 H 0 1 N N N N N N 92.485 119.969 149.547 5.781 -0.253 0.015 H17 A1L5J 40 A1L5J H18 H18 H 0 1 N N N N N N 90.949 121.635 150.570 6.788 1.345 1.713 H18 A1L5J 41 A1L5J H19 H19 H 0 1 N N N N N N 90.109 120.464 149.497 5.200 1.410 2.514 H19 A1L5J 42 A1L5J H20 H20 H 0 1 N N N N N N 95.031 119.713 142.454 -1.354 -2.663 1.004 H20 A1L5J 43 A1L5J H21 H21 H 0 1 N N N N N N 96.507 119.097 143.272 -1.797 -2.428 -0.703 H21 A1L5J 44 A1L5J H23 H23 H 0 1 N N N N N N 96.675 125.993 140.055 -7.896 0.232 0.039 H23 A1L5J 45 A1L5J H24 H24 H 0 1 N N N N N N 95.183 120.239 141.207 -3.924 -2.161 -1.975 H24 A1L5J 46 A1L5J H25 H25 H 0 1 N N N N N N 94.606 121.861 140.695 -3.250 -3.366 -0.851 H25 A1L5J 47 A1L5J H26 H26 H 0 1 N N N N N N 96.231 121.286 140.191 -5.014 -3.201 -1.027 H26 A1L5J 48 A1L5J H27 H27 H 0 1 N N N N N N 91.700 119.084 144.434 0.517 -1.167 -2.462 H27 A1L5J 49 A1L5J H28 H28 H 0 1 N N N N N N 89.516 122.628 149.103 6.604 -0.276 3.457 H28 A1L5J 50 A1L5J H29 H29 H 0 1 N N N N N N 93.249 122.063 151.188 5.863 2.654 -1.818 H29 A1L5J 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L5J C22 C21 SING N N 1 A1L5J C33 C21 SING N N 2 A1L5J C21 C20 DOUB N N 3 A1L5J C20 C19 SING N N 4 A1L5J C19 C18 SING N N 5 A1L5J C34 C17 SING N N 6 A1L5J C18 C17 SING N N 7 A1L5J C17 C16 DOUB N E 8 A1L5J C15 C16 SING N N 9 A1L5J C15 O14 SING N N 10 A1L5J O01 P02 DOUB N N 11 A1L5J O14 P02 SING N N 12 A1L5J P02 O03 SING N N 13 A1L5J P02 O04 SING N N 14 A1L5J O04 C05 SING N N 15 A1L5J C05 O11 SING N N 16 A1L5J C05 C06 SING N N 17 A1L5J O11 C08 SING N N 18 A1L5J C06 O13 SING N N 19 A1L5J C06 C07 SING N N 20 A1L5J O10 C09 SING N N 21 A1L5J C08 C07 SING N N 22 A1L5J C08 C09 SING N N 23 A1L5J C07 O12 SING N N 24 A1L5J O13 H1 SING N N 25 A1L5J C16 H2 SING N N 26 A1L5J C18 H4 SING N N 27 A1L5J C18 H5 SING N N 28 A1L5J C19 H6 SING N N 29 A1L5J C19 H7 SING N N 30 A1L5J C22 H8 SING N N 31 A1L5J C22 H9 SING N N 32 A1L5J C22 H10 SING N N 33 A1L5J C33 H11 SING N N 34 A1L5J C33 H12 SING N N 35 A1L5J C33 H13 SING N N 36 A1L5J C05 H14 SING N N 37 A1L5J C06 H15 SING N N 38 A1L5J C07 H16 SING N N 39 A1L5J C08 H17 SING N N 40 A1L5J C09 H18 SING N N 41 A1L5J C09 H19 SING N N 42 A1L5J C15 H20 SING N N 43 A1L5J C15 H21 SING N N 44 A1L5J C20 H23 SING N N 45 A1L5J C34 H24 SING N N 46 A1L5J C34 H25 SING N N 47 A1L5J C34 H26 SING N N 48 A1L5J O03 H27 SING N N 49 A1L5J O10 H28 SING N N 50 A1L5J O12 H29 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L5J InChI InChI 1.06 "InChI=1S/C15H27O8P/c1-10(2)5-4-6-11(3)7-8-21-24(19,20)23-15-14(18)13(17)12(9-16)22-15/h5,7,12-18H,4,6,8-9H2,1-3H3,(H,19,20)/b11-7+/t12-,13-,14-,15+/m1/s1" A1L5J InChIKey InChI 1.06 YSLCRGJRVMNMDN-XDBUCDCOSA-N A1L5J SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCC\C(C)=C\CO[P](O)(=O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O" A1L5J SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CCO[P](O)(=O)O[CH]1O[CH](CO)[CH](O)[CH]1O" A1L5J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/COP(=O)(O)O[C@H]1[C@@H]([C@@H]([C@H](O1)CO)O)O)/C)C" A1L5J SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CCOP(=O)(O)OC1C(C(C(O1)CO)O)O)C)C" # _pdbx_chem_comp_identifier.comp_id A1L5J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{E})-3,7-dimethylocta-2,6-dienyl] [(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L5J "Create component" 2024-11-06 PDBJ A1L5J "Initial release" 2026-09-02 RCSB #