data_A1L5K # _chem_comp.id A1L5K _chem_comp.name pretomanid _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H13 F3 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(6~{S})-2-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-6-[[4-(trifluoromethyloxy)phenyl]methoxy]-6,7-dihydro-5~{H}-imidazo[2,1-b][1,3]oxazine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-06 _chem_comp.pdbx_modified_date 2026-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 360.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L5K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 9KDJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L5K C22 C12 C 0 1 Y N N N N N 156.178 145.716 119.803 ? ? ? C22 A1L5K 1 A1L5K C23 C13 C 0 1 Y N N N N N 156.594 147.009 119.372 ? ? ? C23 A1L5K 2 A1L5K N24 N2 N 0 1 Y N N N N N 155.622 147.862 119.706 ? ? ? N24 A1L5K 3 A1L5K C25 C14 C 0 1 N N N N N N 155.481 149.357 119.536 ? ? ? C25 A1L5K 4 A1L5K C26 C15 C 0 1 N N S N N N 154.229 149.896 120.190 ? ? ? C26 A1L5K 5 A1L5K O27 O8 O 0 1 N N N N N N 154.327 150.066 121.655 ? ? ? O27 A1L5K 6 A1L5K C28 C16 C 0 1 N N N N N N 155.604 150.160 122.242 ? ? ? C28 A1L5K 7 A1L5K C29 C17 C 0 1 Y N N N N N 155.401 150.049 123.805 ? ? ? C29 A1L5K 8 A1L5K C30 C18 C 0 1 Y N N N N N 155.099 148.846 124.418 ? ? ? C30 A1L5K 9 A1L5K C31 C19 C 0 1 Y N N N N N 154.927 148.748 125.799 ? ? ? C31 A1L5K 10 A1L5K C32 C20 C 0 1 Y N N N N N 155.041 149.897 126.564 ? ? ? C32 A1L5K 11 A1L5K O33 O9 O 0 1 N N N N N N 154.891 149.860 127.966 ? ? ? O33 A1L5K 12 A1L5K C34 C21 C 0 1 N N N N N N 153.604 149.777 128.497 ? ? ? C34 A1L5K 13 A1L5K F35 F1 F 0 1 N N N N N N 153.042 151.018 128.503 ? ? ? F35 A1L5K 14 A1L5K F36 F2 F 0 1 N N N N N N 152.866 148.889 127.771 ? ? ? F36 A1L5K 15 A1L5K F37 F3 F 0 1 N N N N N N 153.694 149.359 129.786 ? ? ? F37 A1L5K 16 A1L5K C38 C22 C 0 1 Y N N N N N 155.328 151.105 125.958 ? ? ? C38 A1L5K 17 A1L5K C39 C23 C 0 1 Y N N N N N 155.511 151.183 124.580 ? ? ? C39 A1L5K 18 A1L5K C40 C24 C 0 1 N N N N N N 153.145 148.962 120.035 ? ? ? C40 A1L5K 19 A1L5K O41 O10 O 0 1 N N N N N N 153.449 147.864 120.779 ? ? ? O41 A1L5K 20 A1L5K C42 C25 C 0 1 Y N N N N N 154.643 147.187 120.309 ? ? ? C42 A1L5K 21 A1L5K N43 N3 N 0 1 Y N N N N N 154.976 145.902 120.372 ? ? ? N43 A1L5K 22 A1L5K H18 H18 H 0 1 N N N N N N 157.519 147.253 118.871 ? ? ? H18 A1L5K 23 A1L5K H19 H19 H 0 1 N N N N N N 156.355 149.848 119.988 ? ? ? H19 A1L5K 24 A1L5K H20 H20 H 0 1 N N N N N N 155.446 149.589 118.461 ? ? ? H20 A1L5K 25 A1L5K H21 H21 H 0 1 N N N N N N 153.967 150.858 119.725 ? ? ? H21 A1L5K 26 A1L5K H22 H22 H 0 1 N N N N N N 156.246 149.341 121.885 ? ? ? H22 A1L5K 27 A1L5K H23 H23 H 0 1 N N N N N N 156.067 151.125 121.988 ? ? ? H23 A1L5K 28 A1L5K H24 H24 H 0 1 N N N N N N 154.994 147.959 123.811 ? ? ? H24 A1L5K 29 A1L5K H25 H25 H 0 1 N N N N N N 154.710 147.797 126.262 ? ? ? H25 A1L5K 30 A1L5K H26 H26 H 0 1 N N N N N N 155.411 151.998 126.560 ? ? ? H26 A1L5K 31 A1L5K H27 H27 H 0 1 N N N N N N 155.739 152.132 124.118 ? ? ? H27 A1L5K 32 A1L5K H28 H28 H 0 1 N N N N N N 152.207 149.411 120.393 ? ? ? H28 A1L5K 33 A1L5K H29 H29 H 0 1 N N N N N N 153.038 148.682 118.977 ? ? ? H29 A1L5K 34 A1L5K N1 N1 N 1 1 N N N N N N ? ? ? ? ? ? N1 A1L5K 35 A1L5K O1 O1 O 0 1 N N N N N N ? ? ? ? ? ? O1 A1L5K 36 A1L5K O2 O2 O -1 1 N N N N N N ? ? ? ? ? ? O2 A1L5K 37 A1L5K H1 H1 H 0 1 N N N N N N ? ? ? ? ? ? H1 A1L5K 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L5K C23 N24 SING Y N 1 A1L5K C23 C22 DOUB Y N 2 A1L5K C25 N24 SING N N 3 A1L5K C25 C26 SING N N 4 A1L5K N24 C42 SING Y N 5 A1L5K C22 N43 SING Y N 6 A1L5K C40 C26 SING N N 7 A1L5K C40 O41 SING N N 8 A1L5K C26 O27 SING N N 9 A1L5K C42 N43 DOUB Y N 10 A1L5K C42 O41 SING N N 11 A1L5K O27 C28 SING N N 12 A1L5K C28 C29 SING N N 13 A1L5K C29 C30 DOUB Y N 14 A1L5K C29 C39 SING Y N 15 A1L5K C30 C31 SING Y N 16 A1L5K C39 C38 DOUB Y N 17 A1L5K C31 C32 DOUB Y N 18 A1L5K C38 C32 SING Y N 19 A1L5K C32 O33 SING N N 20 A1L5K F36 C34 SING N N 21 A1L5K O33 C34 SING N N 22 A1L5K C34 F35 SING N N 23 A1L5K C34 F37 SING N N 24 A1L5K C23 H18 SING N N 25 A1L5K C25 H19 SING N N 26 A1L5K C25 H20 SING N N 27 A1L5K C26 H21 SING N N 28 A1L5K C28 H22 SING N N 29 A1L5K C28 H23 SING N N 30 A1L5K C30 H24 SING N N 31 A1L5K C31 H25 SING N N 32 A1L5K C38 H26 SING N N 33 A1L5K C39 H27 SING N N 34 A1L5K C40 H28 SING N N 35 A1L5K C40 H29 SING N N 36 A1L5K C22 N1 SING N N 37 A1L5K N1 O1 DOUB N N 38 A1L5K N1 O2 SING N N 39 A1L5K O2 H1 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L5K InChI InChI 1.06 "InChI=1S/C14H13F3N3O5/c15-14(16,17)25-10-3-1-9(2-4-10)7-23-11-5-19-6-12(20(21)22)18-13(19)24-8-11/h1-4,6,11,21H,5,7-8H2/t11-/m0/s1" A1L5K InChIKey InChI 1.06 WMTOTWDJQLQWOG-NSHDSACASA-N A1L5K SMILES_CANONICAL CACTVS 3.385 "[OH-][N+](=O)c1cn2C[C@@H](COc2n1)OCc3ccc(OC(F)(F)F)cc3" A1L5K SMILES CACTVS 3.385 "[OH-][N+](=O)c1cn2C[CH](COc2n1)OCc3ccc(OC(F)(F)F)cc3" A1L5K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CO[C@H]2Cn3cc(nc3OC2)[N+](=O)[OH-])OC(F)(F)F" A1L5K SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1COC2Cn3cc(nc3OC2)[N+](=O)[OH-])OC(F)(F)F" # _pdbx_chem_comp_identifier.comp_id A1L5K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{S})-2-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-6-[[4-(trifluoromethyloxy)phenyl]methoxy]-6,7-dihydro-5~{H}-imidazo[2,1-b][1,3]oxazine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L5K "Create component" 2024-11-06 PDBJ A1L5K "Initial release" 2026-09-02 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1L5K _pdbx_chem_comp_synonyms.name "(6~{S})-2-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-6-[[4-(trifluoromethyloxy)phenyl]methoxy]-6,7-dihydro-5~{H}-imidazo[2,1-b][1,3]oxazine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #