data_A1L67 # _chem_comp.id A1L67 _chem_comp.name "(2~{R},3~{R},4~{R})-2-(6-aminopurin-9-yl)-2-(hydroxymethyl)-5-methylidene-oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-12-25 _chem_comp.pdbx_modified_date 2025-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 279.252 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L67 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KPV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L67 C10 C1 C 0 1 N N R N N N -64.671 31.274 115.325 -1.284 0.645 0.347 C10 A1L67 1 A1L67 C11 C2 C 0 1 N N R N N N -65.558 30.852 114.173 -1.760 0.658 -1.131 C11 A1L67 2 A1L67 C12 C3 C 0 1 N N R N N N -65.672 29.351 114.222 -2.439 -0.731 -1.234 C12 A1L67 3 A1L67 C13 C4 C 0 1 N N N N N N -65.472 32.241 116.260 -1.178 2.069 0.895 C13 A1L67 4 A1L67 C14 C5 C 0 1 N N N N N N -64.493 28.912 115.054 -2.714 -1.114 0.208 C14 A1L67 5 A1L67 C15 C6 C 0 1 Y N N N N N -63.156 33.093 114.064 1.195 0.337 -0.058 C15 A1L67 6 A1L67 C16 C7 C 0 1 Y N N N N N -62.183 31.399 115.110 0.212 -1.220 1.154 C16 A1L67 7 A1L67 C17 C8 C 0 1 Y N N N N N -61.608 32.874 113.579 2.131 -0.639 0.327 C17 A1L67 8 A1L67 C18 C9 C 0 1 N N N N N N -63.746 27.803 114.941 -3.232 -2.255 0.613 C18 A1L67 9 A1L67 C19 C10 C 0 1 Y N N N N N -61.252 33.902 112.751 3.463 -0.483 -0.091 C19 A1L67 10 A1L67 C20 C11 C 0 1 Y N N N N N -63.134 35.141 112.708 2.860 1.466 -1.171 C20 A1L67 11 A1L67 N05 N1 N 0 1 Y N N N N N -63.405 31.898 114.949 -0.005 -0.057 0.477 N05 A1L67 12 A1L67 N06 N2 N 0 1 Y N N N N N -61.175 31.607 114.281 1.465 -1.560 1.065 N06 A1L67 13 A1L67 N07 N3 N 0 1 Y N N N N N -63.716 34.257 113.525 1.600 1.361 -0.803 N07 A1L67 14 A1L67 N08 N4 N 0 1 Y N N N N N -61.939 34.901 112.376 3.774 0.577 -0.830 N08 A1L67 15 A1L67 N09 N5 N 0 1 N N N N N N -59.893 33.814 112.258 4.428 -1.411 0.259 N09 A1L67 16 A1L67 O01 O1 O 0 1 N N N N N N -64.359 30.033 116.026 -2.337 -0.083 1.014 O01 A1L67 17 A1L67 O02 O2 O 0 1 N N N N N N -66.857 31.436 114.335 -2.700 1.710 -1.359 O02 A1L67 18 A1L67 O03 O3 O 0 1 N N N N N N -65.668 28.692 112.950 -1.557 -1.676 -1.843 O03 A1L67 19 A1L67 O04 O4 O 0 1 N N N N N N -64.654 32.641 117.340 -0.743 2.024 2.256 O04 A1L67 20 A1L67 H1 H1 H 0 1 N N N N N N -65.104 31.162 113.220 -0.915 0.734 -1.815 H1 A1L67 21 A1L67 H2 H2 H 0 1 N N N N N N -66.593 29.091 114.764 -3.371 -0.660 -1.794 H2 A1L67 22 A1L67 H3 H3 H 0 1 N N N N N N -65.784 33.128 115.689 -0.458 2.634 0.302 H3 A1L67 23 A1L67 H4 H4 H 0 1 N N N N N N -66.362 31.723 116.647 -2.153 2.553 0.841 H4 A1L67 24 A1L67 H5 H5 H 0 1 N N N N N N -62.002 30.782 115.977 -0.545 -1.778 1.686 H5 A1L67 25 A1L67 H7 H7 H 0 1 N N N N N N -62.919 27.638 115.615 -3.500 -3.013 -0.108 H7 A1L67 26 A1L67 H8 H8 H 0 1 N N N N N N -63.972 27.075 114.176 -3.390 -2.433 1.667 H8 A1L67 27 A1L67 H9 H9 H 0 1 N N N N N N -63.658 36.015 112.350 3.155 2.311 -1.776 H9 A1L67 28 A1L67 H11 H11 H 0 1 N N N N N N -59.701 34.598 111.668 4.188 -2.180 0.798 H11 A1L67 29 A1L67 H12 H12 H 0 1 N N N N N N -59.258 33.815 113.030 5.344 -1.292 -0.036 H12 A1L67 30 A1L67 H13 H13 H 0 1 N N N N N N -66.785 32.383 114.304 -3.105 1.691 -2.237 H13 A1L67 31 A1L67 H14 H14 H 0 1 N N N N N N -65.743 27.754 113.079 -1.932 -2.563 -1.933 H14 A1L67 32 A1L67 H15 H15 H 0 1 N N N N N N -65.141 33.228 117.907 -0.653 2.894 2.668 H15 A1L67 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L67 N09 C19 SING N N 1 A1L67 N08 C20 DOUB Y N 2 A1L67 N08 C19 SING Y N 3 A1L67 C20 N07 SING Y N 4 A1L67 C19 C17 DOUB Y N 5 A1L67 O03 C12 SING N N 6 A1L67 N07 C15 DOUB Y N 7 A1L67 C17 C15 SING Y N 8 A1L67 C17 N06 SING Y N 9 A1L67 C15 N05 SING Y N 10 A1L67 C11 C12 SING N N 11 A1L67 C11 O02 SING N N 12 A1L67 C11 C10 SING N N 13 A1L67 C12 C14 SING N N 14 A1L67 N06 C16 DOUB Y N 15 A1L67 C18 C14 DOUB N N 16 A1L67 N05 C16 SING Y N 17 A1L67 N05 C10 SING N N 18 A1L67 C14 O01 SING N N 19 A1L67 C10 O01 SING N N 20 A1L67 C10 C13 SING N N 21 A1L67 C13 O04 SING N N 22 A1L67 C11 H1 SING N N 23 A1L67 C12 H2 SING N N 24 A1L67 C13 H3 SING N N 25 A1L67 C13 H4 SING N N 26 A1L67 C16 H5 SING N N 27 A1L67 C18 H7 SING N N 28 A1L67 C18 H8 SING N N 29 A1L67 C20 H9 SING N N 30 A1L67 N09 H11 SING N N 31 A1L67 N09 H12 SING N N 32 A1L67 O02 H13 SING N N 33 A1L67 O03 H14 SING N N 34 A1L67 O04 H15 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L67 InChI InChI 1.06 "InChI=1S/C11H13N5O4/c1-5-7(18)8(19)11(2-17,20-5)16-4-15-6-9(12)13-3-14-10(6)16/h3-4,7-8,17-19H,1-2H2,(H2,12,13,14)/t7-,8+,11+/m0/s1" A1L67 InChIKey InChI 1.06 UZSSGAOAYPICBZ-VAOFZXAKSA-N A1L67 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@]3(CO)OC(=C)[C@H](O)[C@H]3O" A1L67 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[C]3(CO)OC(=C)[CH](O)[CH]3O" A1L67 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C=C1[C@@H]([C@H]([C@](O1)(CO)n2cnc3c2ncnc3N)O)O" A1L67 SMILES "OpenEye OEToolkits" 2.0.7 "C=C1C(C(C(O1)(CO)n2cnc3c2ncnc3N)O)O" # _pdbx_chem_comp_identifier.comp_id A1L67 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{R})-2-(6-aminopurin-9-yl)-2-(hydroxymethyl)-5-methylidene-oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L67 "Create component" 2024-12-25 PDBJ A1L67 "Initial release" 2025-12-24 RCSB #