data_A1L6C # _chem_comp.id A1L6C _chem_comp.name "7-[2-azanyl-3,5-bis(chloranyl)-6-fluoranyl-phenyl]-6-chloranyl-1-(4-methyl-2-propan-2-yl-pyridin-3-yl)-2-oxidanylidene-4-(4-prop-2-enoylpiperazin-1-yl)-1,8-naphthyridine-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H27 Cl3 F N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-11-26 _chem_comp.pdbx_modified_date 2025-03-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 654.949 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L6C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9KPM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L6C C13 C1 C 0 1 N N N N N N -32.365 18.447 -4.528 1.514 -2.698 -0.134 C13 A1L6C 1 A1L6C C18 C2 C 0 1 Y N N N N N -27.495 18.889 -3.945 -0.490 1.838 -0.356 C18 A1L6C 2 A1L6C C17 C3 C 0 1 Y N N N N N -27.845 17.547 -3.821 -1.510 0.887 -0.244 C17 A1L6C 3 A1L6C C16 C4 C 0 1 Y N N N N N -30.057 18.062 -4.166 0.007 -0.859 -0.193 C16 A1L6C 4 A1L6C C15 C5 C 0 1 Y N N N N N -29.781 19.439 -4.296 1.078 0.049 -0.305 C15 A1L6C 5 A1L6C C19 C6 C 0 1 N N N N N N -31.375 22.575 -5.581 4.372 0.374 -1.639 C19 A1L6C 6 A1L6C C20 C7 C 0 1 N N N N N N -30.665 23.883 -5.917 5.826 0.158 -1.202 C20 A1L6C 7 A1L6C C21 C8 C 0 1 N N N N N N -29.206 23.573 -3.841 5.287 1.124 1.073 C21 A1L6C 8 A1L6C C22 C9 C 0 1 N N N N N N -30.118 22.448 -3.399 3.833 1.341 0.636 C22 A1L6C 9 A1L6C C12 C10 C 0 1 N N N N N N -32.180 19.838 -4.628 2.640 -1.847 -0.245 C12 A1L6C 10 A1L6C O1 O1 O 0 1 N N N N N N -33.501 17.989 -4.615 1.685 -3.902 -0.053 O1 A1L6C 11 A1L6C C2 C11 C 0 1 N N N N N N -33.695 16.646 -1.295 -0.113 -4.044 3.350 C2 A1L6C 12 A1L6C C3 C12 C 0 1 N N N N N N -32.234 16.607 -1.744 -0.662 -2.903 2.493 C3 A1L6C 13 A1L6C C4 C13 C 0 1 N N N N N N -30.997 15.919 -6.648 -0.915 -3.266 -2.514 C4 A1L6C 14 A1L6C N5 N1 N 0 1 N N N N N N -29.884 24.469 -4.805 6.139 1.106 -0.124 N5 A1L6C 15 A1L6C C6 C14 C 0 1 Y N N N N N -32.053 15.715 -2.966 -1.298 -3.469 1.249 C6 A1L6C 16 A1L6C C7 C15 C 0 1 Y N N N N N -32.183 13.595 -3.907 -2.894 -4.832 0.298 C7 A1L6C 17 A1L6C C10 C16 C 0 1 Y N N N N N -31.616 16.232 -4.187 -0.812 -3.103 0.001 C10 A1L6C 18 A1L6C C14 C17 C 0 1 Y N N N N N -28.444 19.840 -4.183 0.816 1.424 -0.388 C14 A1L6C 19 A1L6C C1 C18 C 0 1 N N N N N N -31.344 16.135 -0.596 -1.709 -2.123 3.291 C1 A1L6C 20 A1L6C N1 N2 N 0 1 N N N N N N -30.720 21.754 -4.545 3.520 0.392 -0.442 N1 A1L6C 21 A1L6C C5 C19 C 0 1 Y N N N N N -26.815 16.527 -3.584 -2.919 1.336 -0.212 C5 A1L6C 22 A1L6C N2 N3 N 0 1 Y N N N N N -32.318 14.414 -2.867 -2.306 -4.311 1.358 N2 A1L6C 23 A1L6C C8 C20 C 0 1 Y N N N N N -31.752 14.045 -5.144 -2.470 -4.512 -0.978 C8 A1L6C 24 A1L6C C9 C21 C 0 1 Y N N N N N -31.461 15.396 -5.302 -1.410 -3.635 -1.139 C9 A1L6C 25 A1L6C C11 C22 C 0 1 N N N N N N -30.883 20.381 -4.527 2.451 -0.461 -0.333 C11 A1L6C 26 A1L6C N3 N4 N 0 1 N N N N N N -31.347 17.610 -4.300 0.263 -2.212 -0.110 N3 A1L6C 27 A1L6C N4 N5 N 0 1 Y N N N N N -29.099 17.183 -3.936 -1.239 -0.410 -0.167 N4 A1L6C 28 A1L6C C23 C23 C 0 1 Y N N N N N -26.220 16.314 -2.334 -3.834 0.852 -1.157 C23 A1L6C 29 A1L6C C24 C24 C 0 1 Y N N N N N -25.243 15.365 -2.131 -5.155 1.280 -1.118 C24 A1L6C 30 A1L6C C25 C25 C 0 1 Y N N N N N -24.835 14.607 -3.198 -5.564 2.179 -0.152 C25 A1L6C 31 A1L6C C26 C26 C 0 1 Y N N N N N -25.420 14.817 -4.432 -4.663 2.660 0.784 C26 A1L6C 32 A1L6C C27 C27 C 0 1 Y N N N N N -26.400 15.760 -4.653 -3.346 2.240 0.764 C27 A1L6C 33 A1L6C N6 N6 N 0 1 N N N N N N -26.585 17.087 -1.266 -3.420 -0.054 -2.132 N6 A1L6C 34 A1L6C CL1 CL1 CL 0 0 N N N N N N -25.837 19.362 -3.813 -0.875 3.528 -0.458 CL1 A1L6C 35 A1L6C CL2 CL2 CL 0 0 N N N N N N -24.529 15.152 -0.536 -6.293 0.685 -2.286 CL2 A1L6C 36 A1L6C CL3 CL3 CL 0 0 N N N N N N -24.857 13.835 -5.726 -5.191 3.790 1.992 CL3 A1L6C 37 A1L6C F F1 F 0 1 N N N N N N -26.988 15.966 -5.863 -2.473 2.706 1.682 F A1L6C 38 A1L6C C28 C28 C 0 1 N N N N N N -29.687 25.800 -4.698 7.189 1.944 -0.231 C28 A1L6C 39 A1L6C O2 O2 O 0 1 N N N N N N -28.997 26.212 -3.788 7.831 1.987 -1.264 O2 A1L6C 40 A1L6C C29 C29 C 0 1 N N N N N N -30.311 26.790 -5.669 7.559 2.808 0.900 C29 A1L6C 41 A1L6C C30 C30 C 0 1 N N N N N N -30.589 28.166 -5.054 8.525 3.711 0.759 C30 A1L6C 42 A1L6C C31 C31 C 0 1 N N N N N N -33.349 20.631 -4.827 3.962 -2.398 -0.267 C31 A1L6C 43 A1L6C N7 N7 N 0 1 N N N N N N -34.308 21.207 -4.991 5.010 -2.835 -0.285 N7 A1L6C 44 A1L6C H15 H1 H 0 1 N N N N N N -31.438 21.976 -6.501 4.286 1.326 -2.164 H15 A1L6C 45 A1L6C H14 H2 H 0 1 N N N N N N -32.389 22.818 -5.232 4.064 -0.437 -2.299 H14 A1L6C 46 A1L6C H17 H3 H 0 1 N N N N N N -29.978 23.694 -6.755 5.951 -0.863 -0.840 H17 A1L6C 47 A1L6C H16 H4 H 0 1 N N N N N N -31.425 24.616 -6.224 6.492 0.332 -2.048 H16 A1L6C 48 A1L6C H19 H5 H 0 1 N N N N N N -28.313 23.143 -4.318 5.596 1.937 1.730 H19 A1L6C 49 A1L6C H18 H6 H 0 1 N N N N N N -28.905 24.158 -2.959 5.373 0.174 1.600 H18 A1L6C 50 A1L6C H20 H7 H 0 1 N N N N N N -30.921 22.865 -2.773 3.167 1.166 1.481 H20 A1L6C 51 A1L6C H21 H8 H 0 1 N N N N N N -29.533 21.725 -2.812 3.707 2.362 0.276 H21 A1L6C 52 A1L6C H5 H9 H 0 1 N N N N N N -34.326 16.987 -2.129 0.633 -4.600 2.781 H5 A1L6C 53 A1L6C H4 H10 H 0 1 N N N N N N -34.010 15.639 -0.985 0.347 -3.635 4.249 H4 A1L6C 54 A1L6C H6 H11 H 0 1 N N N N N N -33.800 17.340 -0.448 -0.927 -4.713 3.630 H6 A1L6C 55 A1L6C H7 H12 H 0 1 N N N N N N -31.931 17.629 -2.016 0.152 -2.234 2.212 H7 A1L6C 56 A1L6C H9 H13 H 0 1 N N N N N N -31.870 16.225 -7.244 -1.453 -2.387 -2.869 H9 A1L6C 57 A1L6C H8 H14 H 0 1 N N N N N N -30.335 16.784 -6.497 0.152 -3.046 -2.469 H8 A1L6C 58 A1L6C H10 H15 H 0 1 N N N N N N -30.450 15.127 -7.180 -1.087 -4.097 -3.197 H10 A1L6C 59 A1L6C H11 H16 H 0 1 N N N N N N -32.417 12.548 -3.783 -3.720 -5.515 0.430 H11 A1L6C 60 A1L6C H13 H17 H 0 1 N N N N N N -28.170 20.880 -4.282 1.622 2.137 -0.475 H13 A1L6C 61 A1L6C H2 H18 H 0 1 N N N N N N -30.296 16.111 -0.930 -1.249 -1.714 4.190 H2 A1L6C 62 A1L6C H3 H19 H 0 1 N N N N N N -31.442 16.828 0.253 -2.101 -1.310 2.680 H3 A1L6C 63 A1L6C H1 H20 H 0 1 N N N N N N -31.653 15.126 -0.284 -2.523 -2.792 3.572 H1 A1L6C 64 A1L6C H12 H21 H 0 1 N N N N N N -31.644 13.359 -5.971 -2.960 -4.941 -1.840 H12 A1L6C 65 A1L6C H22 H22 H 0 1 N N N N N N -24.068 13.857 -3.076 -6.592 2.509 -0.126 H22 A1L6C 66 A1L6C H24 H23 H 0 1 N N N N N N -26.068 16.805 -0.458 -2.483 -0.291 -2.207 H24 A1L6C 67 A1L6C H23 H24 H 0 1 N N N N N N -26.391 18.047 -1.468 -4.070 -0.448 -2.734 H23 A1L6C 68 A1L6C H26 H25 H 0 1 N N N N N N -30.537 26.546 -6.696 7.047 2.709 1.846 H26 A1L6C 69 A1L6C H28 H27 H 0 1 N N N N N N -31.032 28.947 -5.655 9.038 3.811 -0.186 H28 A1L6C 70 A1L6C H29 H28 H 0 1 N N N N N N -30.342 28.355 -4.020 8.797 4.346 1.590 H29 A1L6C 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L6C C1 C3 SING N N 1 A1L6C C2 C3 SING N N 2 A1L6C C3 C6 SING N N 3 A1L6C C4 C9 SING N N 4 A1L6C O1 C13 DOUB N N 5 A1L6C N1 C11 SING N N 6 A1L6C N1 C19 SING N N 7 A1L6C N1 C22 SING N N 8 A1L6C C5 C17 SING N N 9 A1L6C C5 C23 DOUB Y N 10 A1L6C C5 C27 SING Y N 11 A1L6C C6 C10 SING Y N 12 A1L6C C6 N2 DOUB Y N 13 A1L6C N2 C7 SING Y N 14 A1L6C C7 C8 DOUB Y N 15 A1L6C C8 C9 SING Y N 16 A1L6C C9 C10 DOUB Y N 17 A1L6C C10 N3 SING N N 18 A1L6C C11 C15 SING N N 19 A1L6C C11 C12 DOUB N N 20 A1L6C C12 C31 SING N N 21 A1L6C C12 C13 SING N N 22 A1L6C C13 N3 SING N N 23 A1L6C N3 C16 SING N N 24 A1L6C C14 C18 SING Y N 25 A1L6C C14 C15 DOUB Y N 26 A1L6C C15 C16 SING Y N 27 A1L6C C16 N4 DOUB Y N 28 A1L6C N4 C17 SING Y N 29 A1L6C C17 C18 DOUB Y N 30 A1L6C C18 CL1 SING N N 31 A1L6C C19 C20 SING N N 32 A1L6C C20 N5 SING N N 33 A1L6C N5 C21 SING N N 34 A1L6C N5 C28 SING N N 35 A1L6C C21 C22 SING N N 36 A1L6C C23 C24 SING Y N 37 A1L6C C23 N6 SING N N 38 A1L6C C24 C25 DOUB Y N 39 A1L6C C24 CL2 SING N N 40 A1L6C C25 C26 SING Y N 41 A1L6C C26 C27 DOUB Y N 42 A1L6C C26 CL3 SING N N 43 A1L6C C27 F SING N N 44 A1L6C C28 O2 DOUB N N 45 A1L6C C28 C29 SING N N 46 A1L6C C29 C30 DOUB N N 47 A1L6C C31 N7 TRIP N N 48 A1L6C C19 H15 SING N N 49 A1L6C C19 H14 SING N N 50 A1L6C C20 H17 SING N N 51 A1L6C C20 H16 SING N N 52 A1L6C C21 H19 SING N N 53 A1L6C C21 H18 SING N N 54 A1L6C C22 H20 SING N N 55 A1L6C C22 H21 SING N N 56 A1L6C C2 H5 SING N N 57 A1L6C C2 H4 SING N N 58 A1L6C C2 H6 SING N N 59 A1L6C C3 H7 SING N N 60 A1L6C C4 H9 SING N N 61 A1L6C C4 H8 SING N N 62 A1L6C C4 H10 SING N N 63 A1L6C C7 H11 SING N N 64 A1L6C C14 H13 SING N N 65 A1L6C C1 H2 SING N N 66 A1L6C C1 H3 SING N N 67 A1L6C C1 H1 SING N N 68 A1L6C C8 H12 SING N N 69 A1L6C C25 H22 SING N N 70 A1L6C N6 H24 SING N N 71 A1L6C N6 H23 SING N N 72 A1L6C C29 H26 SING N N 73 A1L6C C30 H28 SING N N 74 A1L6C C30 H29 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L6C InChI InChI 1.06 "InChI=1S/C31H27Cl3FN7O2/c1-5-22(43)40-8-10-41(11-9-40)29-17-12-21(34)27(23-24(35)19(32)13-20(33)25(23)37)39-30(17)42(31(44)18(29)14-36)28-16(4)6-7-38-26(28)15(2)3/h5-7,12-13,15H,1,8-11,37H2,2-4H3" A1L6C InChIKey InChI 1.06 IBNSEKBMYPAXNN-UHFFFAOYSA-N A1L6C SMILES_CANONICAL CACTVS 3.385 "CC(C)c1nccc(C)c1N2C(=O)C(=C(N3CCN(CC3)C(=O)C=C)c4cc(Cl)c(nc24)c5c(N)c(Cl)cc(Cl)c5F)C#N" A1L6C SMILES CACTVS 3.385 "CC(C)c1nccc(C)c1N2C(=O)C(=C(N3CCN(CC3)C(=O)C=C)c4cc(Cl)c(nc24)c5c(N)c(Cl)cc(Cl)c5F)C#N" A1L6C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccnc(c1N2c3c(cc(c(n3)c4c(c(cc(c4F)Cl)Cl)N)Cl)C(=C(C2=O)C#N)N5CCN(CC5)C(=O)C=C)C(C)C" A1L6C SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccnc(c1N2c3c(cc(c(n3)c4c(c(cc(c4F)Cl)Cl)N)Cl)C(=C(C2=O)C#N)N5CCN(CC5)C(=O)C=C)C(C)C" # _pdbx_chem_comp_identifier.comp_id A1L6C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[2-azanyl-3,5-bis(chloranyl)-6-fluoranyl-phenyl]-6-chloranyl-1-(4-methyl-2-propan-2-yl-pyridin-3-yl)-2-oxidanylidene-4-(4-prop-2-enoylpiperazin-1-yl)-1,8-naphthyridine-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L6C "Create component" 2024-11-26 PDBJ A1L6C "Initial release" 2025-03-12 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L6C _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C30 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #