data_A1L7C # _chem_comp.id A1L7C _chem_comp.name "[(3~{R})-4-[[3-(4-acetamidobutylamino)-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H30 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-01-09 _chem_comp.pdbx_modified_date 2026-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 411.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L7C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9L8H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L7C O5 O1 O 0 1 N N N N N N 33.455 -6.590 17.995 4.110 2.865 1.015 O5 A1L7C 1 A1L7C P P1 P 0 1 N N N N N N 33.278 -5.461 17.048 5.325 2.552 0.229 P A1L7C 2 A1L7C O6 O2 O 0 1 N N N N N N 33.703 -5.898 15.558 6.575 2.364 1.225 O6 A1L7C 3 A1L7C O4 O3 O 0 1 N N N N N N 31.819 -4.810 17.173 5.091 1.192 -0.601 O4 A1L7C 4 A1L7C C13 C1 C 0 1 N N N N N N 31.618 -3.719 18.075 4.698 -0.037 0.013 C13 A1L7C 5 A1L7C C12 C2 C 0 1 N N N N N N 30.243 -3.118 17.891 4.566 -1.122 -1.058 C12 A1L7C 6 A1L7C C14 C3 C 0 1 N N N N N N 30.187 -2.498 16.490 3.509 -0.703 -2.081 C14 A1L7C 7 A1L7C C15 C4 C 0 1 N N N N N N 30.050 -2.009 18.941 5.911 -1.311 -1.762 C15 A1L7C 8 A1L7C C11 C5 C 0 1 N N R N N N 29.248 -4.265 18.101 4.145 -2.438 -0.400 C11 A1L7C 9 A1L7C O7 O4 O 0 1 N N N N N N 29.121 -4.620 19.491 5.191 -2.897 0.459 O7 A1L7C 10 A1L7C C10 C6 C 0 1 N N N N N N 27.935 -3.836 17.545 2.892 -2.218 0.407 C10 A1L7C 11 A1L7C O3 O5 O 0 1 N N N N N N 27.211 -3.113 18.218 2.931 -2.283 1.617 O3 A1L7C 12 A1L7C N3 N1 N 0 1 N N N N N N 27.700 -4.241 16.291 1.727 -1.950 -0.216 N3 A1L7C 13 A1L7C C9 C7 C 0 1 N N N N N N 26.607 -3.749 15.485 0.530 -1.640 0.570 C9 A1L7C 14 A1L7C C8 C8 C 0 1 N N N N N N 25.484 -3.134 16.305 -0.645 -1.377 -0.373 C8 A1L7C 15 A1L7C C7 C9 C 0 1 N N N N N N 24.223 -3.069 15.516 -1.877 -1.058 0.435 C7 A1L7C 16 A1L7C O2 O6 O 0 1 N N N N N N 23.694 -1.993 15.302 -1.819 -1.043 1.646 O2 A1L7C 17 A1L7C N2 N2 N 0 1 N N N N N N 23.739 -4.244 15.143 -3.041 -0.790 -0.188 N2 A1L7C 18 A1L7C C6 C10 C 0 1 N N N N N N 22.459 -4.372 14.500 -4.238 -0.480 0.598 C6 A1L7C 19 A1L7C C5 C11 C 0 1 N N N N N N 21.481 -4.938 15.509 -5.413 -0.216 -0.345 C5 A1L7C 20 A1L7C C4 C12 C 0 1 N N N N N N 20.526 -5.934 14.869 -6.663 0.107 0.476 C4 A1L7C 21 A1L7C C3 C13 C 0 1 N N N N N N 19.113 -5.420 14.902 -7.839 0.370 -0.468 C3 A1L7C 22 A1L7C N1 N3 N 0 1 N N N N N N 18.324 -5.995 13.829 -9.036 0.680 0.318 N1 A1L7C 23 A1L7C C2 C14 C 0 1 N N N N N N 18.296 -5.444 12.617 -10.200 0.948 -0.305 C2 A1L7C 24 A1L7C O1 O7 O 0 1 N N N N N N 19.011 -4.501 12.326 -10.257 0.934 -1.516 O1 A1L7C 25 A1L7C C1 C15 C 0 1 N N N N N N 17.307 -6.014 11.650 -11.432 1.267 0.504 C1 A1L7C 26 A1L7C H2 H2 H 0 1 N N N N N N 33.990 -6.804 15.563 7.407 2.156 0.777 H2 A1L7C 27 A1L7C H3 H3 H 0 1 N N N N N N 31.718 -4.082 19.109 5.451 -0.336 0.742 H3 A1L7C 28 A1L7C H4 H4 H 0 1 N N N N N N 32.378 -2.947 17.883 3.740 0.097 0.514 H4 A1L7C 29 A1L7C H5 H5 H 0 1 N N N N N N 29.195 -2.051 16.326 3.860 0.172 -2.629 H5 A1L7C 30 A1L7C H6 H6 H 0 1 N N N N N N 30.959 -1.719 16.403 3.333 -1.522 -2.779 H6 A1L7C 31 A1L7C H7 H7 H 0 1 N N N N N N 30.367 -3.279 15.736 2.580 -0.459 -1.566 H7 A1L7C 32 A1L7C H8 H8 H 0 1 N N N N N N 30.089 -2.447 19.949 6.644 -1.688 -1.049 H8 A1L7C 33 A1L7C H9 H9 H 0 1 N N N N N N 30.849 -1.261 18.835 5.797 -2.025 -2.578 H9 A1L7C 34 A1L7C H10 H10 H 0 1 N N N N N N 29.073 -1.526 18.789 6.250 -0.355 -2.160 H10 A1L7C 35 A1L7C H11 H11 H 0 1 N N N N N N 29.604 -5.137 17.533 3.954 -3.185 -1.171 H11 A1L7C 36 A1L7C H12 H12 H 0 1 N N N N N N 28.315 -4.257 19.839 5.414 -2.281 1.170 H12 A1L7C 37 A1L7C H13 H13 H 0 1 N N N N N N 28.314 -4.921 15.891 1.681 -1.962 -1.185 H13 A1L7C 38 A1L7C H14 H14 H 0 1 N N N N N N 26.997 -2.984 14.798 0.293 -2.484 1.219 H14 A1L7C 39 A1L7C H15 H15 H 0 1 N N N N N N 26.196 -4.588 14.904 0.714 -0.754 1.178 H15 A1L7C 40 A1L7C H16 H16 H 0 1 N N N N N N 25.316 -3.748 17.202 -0.408 -0.534 -1.022 H16 A1L7C 41 A1L7C H17 H17 H 0 1 N N N N N N 25.773 -2.116 16.606 -0.829 -2.263 -0.981 H17 A1L7C 42 A1L7C H18 H18 H 0 1 N N N N N N 24.280 -5.067 15.314 -3.087 -0.802 -1.157 H18 A1L7C 43 A1L7C H19 H19 H 0 1 N N N N N N 22.113 -3.385 14.158 -4.475 -1.323 1.247 H19 A1L7C 44 A1L7C H20 H20 H 0 1 N N N N N N 22.541 -5.051 13.638 -4.054 0.406 1.206 H20 A1L7C 45 A1L7C H21 H21 H 0 1 N N N N N N 22.045 -5.446 16.306 -5.177 0.627 -0.994 H21 A1L7C 46 A1L7C H22 H22 H 0 1 N N N N N N 20.897 -4.112 15.942 -5.597 -1.102 -0.953 H22 A1L7C 47 A1L7C H23 H23 H 0 1 N N N N N N 20.576 -6.885 15.419 -6.900 -0.736 1.125 H23 A1L7C 48 A1L7C H24 H24 H 0 1 N N N N N N 20.825 -6.099 13.823 -6.480 0.993 1.084 H24 A1L7C 49 A1L7C H25 H25 H 0 1 N N N N N N 19.126 -4.326 14.792 -7.602 1.214 -1.116 H25 A1L7C 50 A1L7C H26 H26 H 0 1 N N N N N N 18.656 -5.686 15.867 -8.023 -0.515 -1.076 H26 A1L7C 51 A1L7C H27 H27 H 0 1 N N N N N N 17.790 -6.822 14.003 -8.990 0.692 1.287 H27 A1L7C 52 A1L7C H28 H28 H 0 1 N N N N N N 17.354 -5.455 10.704 -11.486 2.342 0.675 H28 A1L7C 53 A1L7C H29 H29 H 0 1 N N N N N N 17.545 -7.072 11.463 -12.318 0.941 -0.040 H29 A1L7C 54 A1L7C H30 H30 H 0 1 N N N N N N 16.294 -5.935 12.072 -11.382 0.749 1.461 H30 A1L7C 55 A1L7C O8 O8 O 0 1 N Y N N N N ? ? ? 5.628 3.759 -0.792 O8 A1L7C 56 A1L7C H1 H1 H 0 1 N Y N N N N ? ? ? 5.780 4.611 -0.361 H1 A1L7C 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L7C C1 C2 SING N N 1 A1L7C O1 C2 DOUB N N 2 A1L7C C2 N1 SING N N 3 A1L7C N1 C3 SING N N 4 A1L7C C6 N2 SING N N 5 A1L7C C6 C5 SING N N 6 A1L7C C4 C3 SING N N 7 A1L7C C4 C5 SING N N 8 A1L7C N2 C7 SING N N 9 A1L7C O2 C7 DOUB N N 10 A1L7C C9 N3 SING N N 11 A1L7C C9 C8 SING N N 12 A1L7C C7 C8 SING N N 13 A1L7C O6 P SING N N 14 A1L7C N3 C10 SING N N 15 A1L7C C14 C12 SING N N 16 A1L7C P O4 SING N N 17 A1L7C P O5 DOUB N N 18 A1L7C O4 C13 SING N N 19 A1L7C C10 C11 SING N N 20 A1L7C C10 O3 DOUB N N 21 A1L7C C12 C13 SING N N 22 A1L7C C12 C11 SING N N 23 A1L7C C12 C15 SING N N 24 A1L7C C11 O7 SING N N 25 A1L7C O6 H2 SING N N 26 A1L7C C13 H3 SING N N 27 A1L7C C13 H4 SING N N 28 A1L7C C14 H5 SING N N 29 A1L7C C14 H6 SING N N 30 A1L7C C14 H7 SING N N 31 A1L7C C15 H8 SING N N 32 A1L7C C15 H9 SING N N 33 A1L7C C15 H10 SING N N 34 A1L7C C11 H11 SING N N 35 A1L7C O7 H12 SING N N 36 A1L7C N3 H13 SING N N 37 A1L7C C9 H14 SING N N 38 A1L7C C9 H15 SING N N 39 A1L7C C8 H16 SING N N 40 A1L7C C8 H17 SING N N 41 A1L7C N2 H18 SING N N 42 A1L7C C6 H19 SING N N 43 A1L7C C6 H20 SING N N 44 A1L7C C5 H21 SING N N 45 A1L7C C5 H22 SING N N 46 A1L7C C4 H23 SING N N 47 A1L7C C4 H24 SING N N 48 A1L7C C3 H25 SING N N 49 A1L7C C3 H26 SING N N 50 A1L7C N1 H27 SING N N 51 A1L7C C1 H28 SING N N 52 A1L7C C1 H29 SING N N 53 A1L7C C1 H30 SING N N 54 A1L7C P O8 SING N N 55 A1L7C O8 H1 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L7C InChI InChI 1.06 "InChI=1S/C15H30N3O8P/c1-11(19)16-7-4-5-8-17-12(20)6-9-18-14(22)13(21)15(2,3)10-26-27(23,24)25/h13,21H,4-10H2,1-3H3,(H,16,19)(H,17,20)(H,18,22)(H2,23,24,25)/t13-/m0/s1" A1L7C InChIKey InChI 1.06 WELIAYKYJCYRGJ-ZDUSSCGKSA-N A1L7C SMILES_CANONICAL CACTVS 3.385 "CC(=O)NCCCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O" A1L7C SMILES CACTVS 3.385 "CC(=O)NCCCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O" A1L7C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O" A1L7C SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id A1L7C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(3~{R})-4-[[3-(4-acetamidobutylamino)-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L7C "Create component" 2025-01-09 PDBJ A1L7C "Modify PCM" 2026-01-12 PDBJ A1L7C "Initial release" 2026-01-21 RCSB # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 A1L7C CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C1 SG ? ? 2 A1L7C SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" P OG ? ? #