data_A1L7Q # _chem_comp.id A1L7Q _chem_comp.name "1-(2-azanylideneethyl)-6-(1,3-dihydroisoindol-2-yl)-3-(5-methylpyridin-3-yl)-5-[[3,4,5-tris(fluoranyl)phenyl]methyl]pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H22 F3 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-19 _chem_comp.pdbx_modified_date 2025-05-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.491 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L7Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9LVT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L7Q C1 C1 C 0 1 N N N N N N 32.633 -13.522 26.382 6.564 -1.420 -0.864 C1 A1L7Q 1 A1L7Q C2 C2 C 0 1 Y N N N N N 33.450 -13.917 25.182 5.856 -0.214 -0.303 C2 A1L7Q 2 A1L7Q C3 C3 C 0 1 Y N N N N N 34.234 -15.057 25.191 4.472 -0.163 -0.277 C3 A1L7Q 3 A1L7Q C4 C4 C 0 1 Y N N N N N 34.992 -15.389 24.086 3.862 0.972 0.251 C4 A1L7Q 4 A1L7Q C5 C5 C 0 1 Y N N N N N 34.940 -14.586 22.964 4.657 2.005 0.728 C5 A1L7Q 5 A1L7Q C6 C6 C 0 1 Y N N N N N 33.470 -13.172 24.016 6.580 0.853 0.196 C6 A1L7Q 6 A1L7Q N1 N1 N 0 1 Y N N N N N 34.209 -13.477 22.936 5.971 1.916 0.684 N1 A1L7Q 7 A1L7Q N2 N2 N 0 1 N N N N N N 35.732 -16.623 24.107 2.464 1.070 0.299 N2 A1L7Q 8 A1L7Q N3 N3 N 0 1 N N N N N N 35.720 -18.957 23.592 0.501 2.173 -0.346 N3 A1L7Q 9 A1L7Q O1 O1 O 0 1 N N N N N N 33.948 -17.664 23.170 2.499 2.848 -1.019 O1 A1L7Q 10 A1L7Q C7 C7 C 0 1 N N N N N N 35.073 -17.739 23.607 1.841 2.054 -0.375 C7 A1L7Q 11 A1L7Q C8 C8 C 0 1 N N N N N N 35.007 -20.038 22.892 -0.150 3.254 -1.089 C8 A1L7Q 12 A1L7Q C9 C9 C 0 1 N N N N N N 34.936 -19.572 21.425 -0.326 2.841 -2.527 C9 A1L7Q 13 A1L7Q C10 C10 C 0 1 N N N N N N 36.995 -19.094 24.094 -0.259 1.285 0.376 C10 A1L7Q 14 A1L7Q C11 C11 C 0 1 N N N N N N 36.978 -21.437 24.940 -2.428 2.007 1.474 C11 A1L7Q 15 A1L7Q C12 C12 C 0 1 Y N N N N N 37.853 -22.590 24.584 -3.877 1.918 1.068 C12 A1L7Q 16 A1L7Q C13 C13 C 0 1 Y N N N N N 38.967 -22.160 23.878 -3.957 1.306 -0.168 C13 A1L7Q 17 A1L7Q C14 C14 C 0 1 N N N N N N 38.917 -20.688 23.640 -2.564 0.964 -0.633 C14 A1L7Q 18 A1L7Q C15 C15 C 0 1 Y N N N N N 39.922 -23.066 23.439 -5.192 1.107 -0.761 C15 A1L7Q 19 A1L7Q O2 O2 O 0 1 N N N N N N 37.527 -15.627 25.001 2.327 -0.717 1.619 O2 A1L7Q 20 A1L7Q N4 N4 N 0 1 N N N N N N 33.917 -19.885 20.630 -1.492 2.832 -3.053 N4 A1L7Q 21 A1L7Q N5 N5 N 0 1 N N N N N N 37.597 -20.345 24.157 -1.625 1.408 0.404 N5 A1L7Q 22 A1L7Q C16 C16 C 0 1 Y N N N N N 39.733 -24.408 23.741 -6.344 1.520 -0.120 C16 A1L7Q 23 A1L7Q C17 C17 C 0 1 Y N N N N N 38.629 -24.832 24.448 -6.264 2.132 1.117 C17 A1L7Q 24 A1L7Q C18 C18 C 0 1 Y N N N N N 37.673 -23.933 24.890 -5.032 2.331 1.710 C18 A1L7Q 25 A1L7Q C19 C19 C 0 1 N N N N N N 37.658 -17.969 24.626 0.357 0.275 1.062 C19 A1L7Q 26 A1L7Q C20 C20 C 0 1 N N N N N N 39.001 -18.088 25.309 -0.454 -0.712 1.861 C20 A1L7Q 27 A1L7Q C21 C21 C 0 1 Y N N N N N 40.305 -17.893 24.596 -0.728 -1.933 1.021 C21 A1L7Q 28 A1L7Q C22 C22 C 0 1 Y N N N N N 40.434 -17.583 23.251 -1.946 -2.072 0.382 C22 A1L7Q 29 A1L7Q C23 C23 C 0 1 Y N N N N N 41.694 -17.426 22.732 -2.200 -3.192 -0.390 C23 A1L7Q 30 A1L7Q F1 F1 F 0 1 N N N N N N 41.884 -17.130 21.433 -3.390 -3.328 -1.014 F1 A1L7Q 31 A1L7Q C24 C24 C 0 1 Y N N N N N 42.820 -17.552 23.507 -1.232 -4.176 -0.522 C24 A1L7Q 32 A1L7Q F2 F2 F 0 1 N N N N N N 44.051 -17.386 22.973 -1.478 -5.270 -1.275 F2 A1L7Q 33 A1L7Q C25 C25 C 0 1 Y N N N N N 42.669 -17.866 24.833 -0.012 -4.034 0.120 C25 A1L7Q 34 A1L7Q F3 F3 F 0 1 N N N N N N 43.775 -18.021 25.598 0.934 -4.991 -0.008 F3 A1L7Q 35 A1L7Q C26 C26 C 0 1 Y N N N N N 41.430 -18.043 25.384 0.240 -2.910 0.887 C26 A1L7Q 36 A1L7Q C27 C27 C 0 1 N N N N N N 37.012 -16.683 24.620 1.756 0.175 1.015 C27 A1L7Q 37 A1L7Q H1 H1 H 0 1 N N N N N N 31.634 -13.976 26.312 6.733 -1.279 -1.931 H1 A1L7Q 38 A1L7Q H2 H2 H 0 1 N N N N N N 33.132 -13.874 27.297 7.522 -1.547 -0.358 H2 A1L7Q 39 A1L7Q H3 H3 H 0 1 N N N N N N 32.536 -12.427 26.415 5.950 -2.307 -0.707 H3 A1L7Q 40 A1L7Q H4 H4 H 0 1 N N N N N N 34.253 -15.690 26.066 3.881 -0.984 -0.656 H4 A1L7Q 41 A1L7Q H5 H5 H 0 1 N N N N N N 35.507 -14.866 22.088 4.194 2.890 1.138 H5 A1L7Q 42 A1L7Q H6 H6 H 0 1 N N N N N N 32.851 -12.288 23.971 7.660 0.819 0.178 H6 A1L7Q 43 A1L7Q H7 H7 H 0 1 N N N N N N 33.997 -20.169 23.307 -1.126 3.461 -0.649 H7 A1L7Q 44 A1L7Q H8 H8 H 0 1 N N N N N N 35.562 -20.984 22.972 0.467 4.151 -1.041 H8 A1L7Q 45 A1L7Q H9 H9 H 0 1 N N N N N N 35.741 -18.971 21.029 0.533 2.551 -3.115 H9 A1L7Q 46 A1L7Q H10 H10 H 0 1 N N N N N N 37.010 -21.226 26.019 -2.145 3.052 1.607 H10 A1L7Q 47 A1L7Q H11 H11 H 0 1 N N N N N N 35.937 -21.612 24.632 -2.271 1.461 2.405 H11 A1L7Q 48 A1L7Q H12 H12 H 0 1 N N N N N N 39.712 -20.166 24.193 -2.476 -0.114 -0.773 H12 A1L7Q 49 A1L7Q H13 H13 H 0 1 N N N N N N 39.001 -20.453 22.569 -2.351 1.478 -1.570 H13 A1L7Q 50 A1L7Q H14 H14 H 0 1 N N N N N N 40.786 -22.737 22.880 -5.254 0.629 -1.728 H14 A1L7Q 51 A1L7Q H15 H15 H 0 1 N N N N N N 34.027 -19.504 19.712 -1.605 2.566 -3.979 H15 A1L7Q 52 A1L7Q H16 H16 H 0 1 N N N N N N 40.465 -25.133 23.416 -7.306 1.364 -0.584 H16 A1L7Q 53 A1L7Q H17 H17 H 0 1 N N N N N N 38.507 -25.884 24.661 -7.164 2.455 1.619 H17 A1L7Q 54 A1L7Q H18 H18 H 0 1 N N N N N N 36.815 -24.265 25.455 -4.970 2.810 2.676 H18 A1L7Q 55 A1L7Q H19 H19 H 0 1 N N N N N N 39.036 -19.103 25.731 0.102 -1.001 2.752 H19 A1L7Q 56 A1L7Q H20 H20 H 0 1 N N N N N N 38.991 -17.352 26.126 -1.398 -0.253 2.154 H20 A1L7Q 57 A1L7Q H21 H21 H 0 1 N N N N N N 39.561 -17.468 22.625 -2.700 -1.305 0.485 H21 A1L7Q 58 A1L7Q H22 H22 H 0 1 N N N N N N 41.331 -18.298 26.429 1.193 -2.797 1.383 H22 A1L7Q 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L7Q N4 C9 DOUB N N 1 A1L7Q C9 C8 SING N N 2 A1L7Q F1 C23 SING N N 3 A1L7Q C23 C22 SING Y N 4 A1L7Q C23 C24 DOUB Y N 5 A1L7Q C8 N3 SING N N 6 A1L7Q N1 C5 SING Y N 7 A1L7Q N1 C6 DOUB Y N 8 A1L7Q C5 C4 DOUB Y N 9 A1L7Q F2 C24 SING N N 10 A1L7Q O1 C7 DOUB N N 11 A1L7Q C22 C21 DOUB Y N 12 A1L7Q C15 C16 DOUB Y N 13 A1L7Q C15 C13 SING Y N 14 A1L7Q C24 C25 SING Y N 15 A1L7Q N3 C7 SING N N 16 A1L7Q N3 C10 SING N N 17 A1L7Q C7 N2 SING N N 18 A1L7Q C14 C13 SING N N 19 A1L7Q C14 N5 SING N N 20 A1L7Q C16 C17 SING Y N 21 A1L7Q C13 C12 DOUB Y N 22 A1L7Q C6 C2 SING Y N 23 A1L7Q C4 N2 SING N N 24 A1L7Q C4 C3 SING Y N 25 A1L7Q C10 N5 SING N N 26 A1L7Q C10 C19 DOUB N N 27 A1L7Q N2 C27 SING N N 28 A1L7Q N5 C11 SING N N 29 A1L7Q C17 C18 DOUB Y N 30 A1L7Q C12 C18 SING Y N 31 A1L7Q C12 C11 SING N N 32 A1L7Q C21 C20 SING N N 33 A1L7Q C21 C26 SING Y N 34 A1L7Q C27 C19 SING N N 35 A1L7Q C27 O2 DOUB N N 36 A1L7Q C19 C20 SING N N 37 A1L7Q C25 C26 DOUB Y N 38 A1L7Q C25 F3 SING N N 39 A1L7Q C2 C3 DOUB Y N 40 A1L7Q C2 C1 SING N N 41 A1L7Q C1 H1 SING N N 42 A1L7Q C1 H2 SING N N 43 A1L7Q C1 H3 SING N N 44 A1L7Q C3 H4 SING N N 45 A1L7Q C5 H5 SING N N 46 A1L7Q C6 H6 SING N N 47 A1L7Q C8 H7 SING N N 48 A1L7Q C8 H8 SING N N 49 A1L7Q C9 H9 SING N N 50 A1L7Q C11 H10 SING N N 51 A1L7Q C11 H11 SING N N 52 A1L7Q C14 H12 SING N N 53 A1L7Q C14 H13 SING N N 54 A1L7Q C15 H14 SING N N 55 A1L7Q N4 H15 SING N N 56 A1L7Q C16 H16 SING N N 57 A1L7Q C17 H17 SING N N 58 A1L7Q C18 H18 SING N N 59 A1L7Q C20 H19 SING N N 60 A1L7Q C20 H20 SING N N 61 A1L7Q C22 H21 SING N N 62 A1L7Q C26 H22 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L7Q InChI InChI 1.06 "InChI=1S/C27H22F3N5O2/c1-16-8-20(13-32-12-16)35-26(36)21(9-17-10-22(28)24(30)23(29)11-17)25(34(7-6-31)27(35)37)33-14-18-4-2-3-5-19(18)15-33/h2-6,8,10-13,31H,7,9,14-15H2,1H3/b31-6-" A1L7Q InChIKey InChI 1.06 XJHRRUKAUCQCNU-SVRKQYBGSA-N A1L7Q SMILES_CANONICAL CACTVS 3.385 "Cc1cncc(c1)N2C(=O)N(CC=N)C(=C(Cc3cc(F)c(F)c(F)c3)C2=O)N4Cc5ccccc5C4" A1L7Q SMILES CACTVS 3.385 "Cc1cncc(c1)N2C(=O)N(CC=N)C(=C(Cc3cc(F)c(F)c(F)c3)C2=O)N4Cc5ccccc5C4" A1L7Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\CN1C(=C(C(=O)N(C1=O)c2cc(cnc2)C)Cc3cc(c(c(c3)F)F)F)N4Cc5ccccc5C4" A1L7Q SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cnc1)N2C(=O)C(=C(N(C2=O)CC=N)N3Cc4ccccc4C3)Cc5cc(c(c(c5)F)F)F" # _pdbx_chem_comp_identifier.comp_id A1L7Q _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-(2-azanylideneethyl)-6-(1,3-dihydroisoindol-2-yl)-3-(5-methylpyridin-3-yl)-5-[[3,4,5-tris(fluoranyl)phenyl]methyl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L7Q "Create component" 2025-02-19 PDBJ A1L7Q "Modify PCM" 2025-02-19 PDBJ A1L7Q "Initial release" 2025-05-14 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L7Q _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #