data_A1L7V # _chem_comp.id A1L7V _chem_comp.name "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (1~{Z})-5-[methyl(oxidanyl)-$l^{3}-sulfanyl]-~{N}-oxidanyl-pentanimidothioate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H24 N O7 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-25 _chem_comp.pdbx_modified_date 2026-02-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.451 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L7V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 9M0L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L7V C10 C1 C 0 1 N N N N N N -29.720 5.214 5.612 ? ? ? C10 A1L7V 1 A1L7V C12 C2 C 0 1 N N N N N N -27.472 2.346 3.921 ? ? ? C12 A1L7V 2 A1L7V C11 C3 C 0 1 N N N N N N -29.093 3.814 5.627 ? ? ? C11 A1L7V 3 A1L7V C01 C4 C 0 1 N N S N N N -33.735 3.069 10.933 ? ? ? C01 A1L7V 4 A1L7V C02 C5 C 0 1 N N S N N N -34.740 3.305 9.849 ? ? ? C02 A1L7V 5 A1L7V C03 C6 C 0 1 N N R N N N -32.368 3.265 10.349 ? ? ? C03 A1L7V 6 A1L7V C04 C7 C 0 1 N N R N N N -34.470 2.528 8.549 ? ? ? C04 A1L7V 7 A1L7V C05 C8 C 0 1 N N S N N N -32.191 2.372 9.099 ? ? ? C05 A1L7V 8 A1L7V C06 C9 C 0 1 N N N N N N -35.469 3.034 7.462 ? ? ? C06 A1L7V 9 A1L7V C07 C10 C 0 1 N N N N N N -30.117 4.315 8.840 ? ? ? C07 A1L7V 10 A1L7V C08 C11 C 0 1 N N N N N N -30.594 5.447 7.922 ? ? ? C08 A1L7V 11 A1L7V C09 C12 C 0 1 N N N N N N -29.458 5.809 6.993 ? ? ? C09 A1L7V 12 A1L7V N01 N1 N 0 1 N N N N N N -29.476 4.606 9.887 ? ? ? N01 A1L7V 13 A1L7V O01 O1 O 0 1 N N N N N N -33.164 2.838 8.146 ? ? ? O01 A1L7V 14 A1L7V O02 O2 O 0 1 N N N N N N -33.929 3.985 12.001 ? ? ? O02 A1L7V 15 A1L7V O03 O3 O 0 1 N N N N N N -35.982 2.887 10.455 ? ? ? O03 A1L7V 16 A1L7V O04 O4 O 0 1 N N N N N N -31.415 2.817 11.299 ? ? ? O04 A1L7V 17 A1L7V O05 O5 O 0 1 N N N N N N -35.307 4.444 7.200 ? ? ? O05 A1L7V 18 A1L7V O06 O6 O 0 1 N N N N N N -29.055 3.590 10.806 ? ? ? O06 A1L7V 19 A1L7V O07 O7 O 0 1 N N N N N N -29.153 4.279 2.848 ? ? ? O07 A1L7V 20 A1L7V S01 S1 S 0 1 N N N N N N -30.541 2.596 8.341 ? ? ? S01 A1L7V 21 A1L7V S02 S2 S 0 1 N N S N N N -29.123 3.081 3.975 ? ? ? S02 A1L7V 22 A1L7V H17 H1 H 0 1 N N N N N N -29.251 5.834 4.834 ? ? ? H17 A1L7V 23 A1L7V H18 H2 H 0 1 N N N N N N -30.802 5.146 5.424 ? ? ? H18 A1L7V 24 A1L7V H21 H3 H 0 1 N N N N N N -27.406 1.536 4.662 ? ? ? H21 A1L7V 25 A1L7V H23 H4 H 0 1 N N N N N N -27.284 1.939 2.916 ? ? ? H23 A1L7V 26 A1L7V H22 H5 H 0 1 N N N N N N -26.720 3.116 4.151 ? ? ? H22 A1L7V 27 A1L7V H19 H6 H 0 1 N N N N N N -29.660 3.172 6.317 ? ? ? H19 A1L7V 28 A1L7V H20 H7 H 0 1 N N N N N N -28.050 3.889 5.970 ? ? ? H20 A1L7V 29 A1L7V H02 H8 H 0 1 N N N N N N -33.829 2.035 11.295 ? ? ? H02 A1L7V 30 A1L7V H03 H9 H 0 1 N N N N N N -34.778 4.380 9.617 ? ? ? H03 A1L7V 31 A1L7V H04 H10 H 0 1 N N N N N N -32.211 4.320 10.080 ? ? ? H04 A1L7V 32 A1L7V H05 H11 H 0 1 N N N N N N -34.611 1.450 8.714 ? ? ? H05 A1L7V 33 A1L7V H06 H12 H 0 1 N N N N N N -32.308 1.307 9.348 ? ? ? H06 A1L7V 34 A1L7V H08 H13 H 0 1 N N N N N N -36.496 2.852 7.810 ? ? ? H08 A1L7V 35 A1L7V H07 H14 H 0 1 N N N N N N -35.294 2.476 6.530 ? ? ? H07 A1L7V 36 A1L7V H12 H15 H 0 1 N N N N N N -30.876 6.323 8.525 ? ? ? H12 A1L7V 37 A1L7V H13 H16 H 0 1 N N N N N N -31.462 5.111 7.336 ? ? ? H13 A1L7V 38 A1L7V H15 H17 H 0 1 N N N N N N -28.515 5.407 7.393 ? ? ? H15 A1L7V 39 A1L7V H14 H18 H 0 1 N N N N N N -29.385 6.904 6.913 ? ? ? H14 A1L7V 40 A1L7V H09 H19 H 0 1 N N N N N N -33.284 3.822 12.680 ? ? ? H09 A1L7V 41 A1L7V H10 H20 H 0 1 N N N N N N -36.126 3.380 11.254 ? ? ? H10 A1L7V 42 A1L7V H11 H21 H 0 1 N N N N N N -31.486 3.339 12.090 ? ? ? H11 A1L7V 43 A1L7V H16 H22 H 0 1 N N N N N N -35.929 4.717 6.536 ? ? ? H16 A1L7V 44 A1L7V H01 H23 H 0 1 N N N N N N -28.589 3.991 11.530 ? ? ? H01 A1L7V 45 A1L7V H1 H24 H 0 1 N N N N N N -30.009 4.691 2.846 ? ? ? H1 A1L7V 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L7V O07 S02 SING N N 1 A1L7V C12 S02 SING N N 2 A1L7V S02 C11 SING N N 3 A1L7V C10 C11 SING N N 4 A1L7V C10 C09 SING N N 5 A1L7V C09 C08 SING N N 6 A1L7V O05 C06 SING N N 7 A1L7V C06 C04 SING N N 8 A1L7V C08 C07 SING N N 9 A1L7V O01 C04 SING N N 10 A1L7V O01 C05 SING N N 11 A1L7V S01 C07 SING N N 12 A1L7V S01 C05 SING N N 13 A1L7V C04 C02 SING N N 14 A1L7V C07 N01 DOUB N Z 15 A1L7V C05 C03 SING N N 16 A1L7V C02 O03 SING N N 17 A1L7V C02 C01 SING N N 18 A1L7V N01 O06 SING N N 19 A1L7V C03 C01 SING N N 20 A1L7V C03 O04 SING N N 21 A1L7V C01 O02 SING N N 22 A1L7V C10 H17 SING N N 23 A1L7V C10 H18 SING N N 24 A1L7V C12 H21 SING N N 25 A1L7V C12 H23 SING N N 26 A1L7V C12 H22 SING N N 27 A1L7V C11 H19 SING N N 28 A1L7V C11 H20 SING N N 29 A1L7V C01 H02 SING N N 30 A1L7V C02 H03 SING N N 31 A1L7V C03 H04 SING N N 32 A1L7V C04 H05 SING N N 33 A1L7V C05 H06 SING N N 34 A1L7V C06 H08 SING N N 35 A1L7V C06 H07 SING N N 36 A1L7V C08 H12 SING N N 37 A1L7V C08 H13 SING N N 38 A1L7V C09 H15 SING N N 39 A1L7V C09 H14 SING N N 40 A1L7V O02 H09 SING N N 41 A1L7V O03 H10 SING N N 42 A1L7V O04 H11 SING N N 43 A1L7V O05 H16 SING N N 44 A1L7V O06 H01 SING N N 45 A1L7V O07 H1 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L7V InChI InChI 1.06 "InChI=1S/C12H24NO7S2/c1-22(19)5-3-2-4-8(13-18)21-12-11(17)10(16)9(15)7(6-14)20-12/h7,9-12,14-19H,2-6H2,1H3/b13-8-/t7-,9-,10+,11-,12+/m1/s1" A1L7V InChIKey InChI 1.06 JVJFEIQKNHAMBL-AHMUMSBHSA-N A1L7V SMILES_CANONICAL CACTVS 3.385 "C[S@](O)CCCC\C(S[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)=N\O" A1L7V SMILES CACTVS 3.385 "C[S](O)CCCCC(S[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)=NO" A1L7V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[S@@](CCCC/C(=N/O)/S[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)O" A1L7V SMILES "OpenEye OEToolkits" 2.0.7 "C[S](CCCCC(=NO)SC1C(C(C(C(O1)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1L7V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] (1~{Z})-5-[methyl(oxidanyl)-$l^{3}-sulfanyl]-~{N}-oxidanyl-pentanimidothioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L7V "Create component" 2025-02-25 PDBJ A1L7V "Initial release" 2026-03-04 RCSB #