data_A1L7W # _chem_comp.id A1L7W _chem_comp.name "5-(3-cyanophenyl)-~{N}-[[(3~{S})-1-(iminomethyl)pyrrolidin-3-yl]methyl]-1,3,4-oxadiazole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-02-26 _chem_comp.pdbx_modified_date 2025-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.337 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L7W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9LYF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L7W C02 C1 C 0 1 N N N N N N -2.670 -20.794 7.006 0.891 -1.401 -0.060 C02 A1L7W 1 A1L7W C04 C2 C 0 1 N N N N N N -1.678 -22.255 5.107 3.316 -1.492 -0.273 C04 A1L7W 2 A1L7W C05 C3 C 0 1 N N S N N N -1.808 -21.360 3.854 4.463 -0.551 -0.646 C05 A1L7W 3 A1L7W C06 C4 C 0 1 N N N N N N -1.351 -22.015 2.796 5.832 -1.274 -0.544 C06 A1L7W 4 A1L7W C07 C5 C 0 1 N N N N N N 0.098 -21.308 2.417 6.814 -0.116 -0.268 C07 A1L7W 5 A1L7W C09 C6 C 0 1 N N N N N N 0.303 -18.764 2.073 6.532 2.217 0.660 C09 A1L7W 6 A1L7W C18 C7 C 0 1 N N N N N N -0.853 -20.072 4.072 4.625 0.572 0.408 C18 A1L7W 7 A1L7W C19 C8 C 0 1 Y N N N N N -2.499 -20.069 8.311 -0.387 -0.673 -0.137 C19 A1L7W 8 A1L7W C22 C9 C 0 1 Y N N N N N -2.917 -18.864 10.082 -2.486 -0.175 -0.066 C22 A1L7W 9 A1L7W C23 C10 C 0 1 Y N N N N N -3.635 -17.933 11.092 -3.952 -0.248 0.103 C23 A1L7W 10 A1L7W C24 C11 C 0 1 Y N N N N N -4.763 -17.220 10.708 -4.740 0.875 -0.140 C24 A1L7W 11 A1L7W C25 C12 C 0 1 Y N N N N N -5.394 -16.381 11.620 -6.122 0.796 0.022 C25 A1L7W 12 A1L7W C26 C13 C 0 1 N N N N N N -6.670 -15.564 11.208 -6.941 1.945 -0.226 C26 A1L7W 13 A1L7W C28 C14 C 0 1 Y N N N N N -4.904 -16.259 12.887 -6.708 -0.406 0.428 C28 A1L7W 14 A1L7W C29 C15 C 0 1 Y N N N N N -3.770 -16.980 13.272 -5.920 -1.515 0.667 C29 A1L7W 15 A1L7W C30 C16 C 0 1 Y N N N N N -3.145 -17.812 12.367 -4.551 -1.446 0.503 C30 A1L7W 16 A1L7W N03 N1 N 0 1 N N N N N N -1.503 -21.484 6.379 2.045 -0.768 -0.349 N03 A1L7W 17 A1L7W N08 N2 N 0 1 N N N N N N -0.092 -20.026 2.776 6.034 0.994 0.298 N08 A1L7W 18 A1L7W N17 N3 N 0 1 N N N N N N 0.946 -18.791 0.966 7.792 2.471 0.515 N17 A1L7W 19 A1L7W N20 N4 N 0 1 Y N N N N N -1.430 -20.119 9.093 -0.545 0.587 -0.477 N20 A1L7W 20 A1L7W N21 N5 N 0 1 Y N N N N N -1.689 -19.347 10.205 -1.796 0.887 -0.435 N21 A1L7W 21 A1L7W N27 N6 N 0 1 N N N N N N -7.601 -14.966 10.918 -7.590 2.856 -0.423 N27 A1L7W 22 A1L7W O01 O1 O 0 1 N N N N N N -3.723 -20.852 6.496 0.905 -2.572 0.268 O01 A1L7W 23 A1L7W O31 O2 O 0 1 Y N N N N N -3.406 -19.308 8.927 -1.612 -1.179 0.123 O31 A1L7W 24 A1L7W H1 H1 H 0 1 N N N N N N -2.588 -22.867 5.193 3.297 -2.334 -0.965 H1 A1L7W 25 A1L7W H2 H2 H 0 1 N N N N N N -0.806 -22.912 4.976 3.464 -1.860 0.743 H2 A1L7W 26 A1L7W H3 H3 H 0 1 N N N N N N -2.848 -21.020 3.742 4.314 -0.133 -1.642 H3 A1L7W 27 A1L7W H4 H4 H 0 1 N N N N N N -2.054 -21.922 1.955 5.832 -1.985 0.282 H4 A1L7W 28 A1L7W H5 H5 H 0 1 N N N N N N -1.207 -23.078 3.037 6.075 -1.774 -1.482 H5 A1L7W 29 A1L7W H6 H6 H 0 1 N N N N N N 0.310 -21.391 1.341 7.574 -0.437 0.446 H6 A1L7W 30 A1L7W H7 H7 H 0 1 N N N N N N 0.921 -21.761 2.988 7.287 0.199 -1.198 H7 A1L7W 31 A1L7W H8 H8 H 0 1 N N N N N N 0.040 -17.811 2.509 5.873 2.969 1.068 H8 A1L7W 32 A1L7W H9 H9 H 0 1 N N N N N N -0.177 -20.216 4.928 3.961 1.406 0.180 H9 A1L7W 33 A1L7W H10 H10 H 0 1 N N N N N N -1.444 -19.156 4.221 4.420 0.187 1.407 H10 A1L7W 34 A1L7W H11 H11 H 0 1 N N N N N N -5.149 -17.317 9.704 -4.283 1.802 -0.453 H11 A1L7W 35 A1L7W H12 H12 H 0 1 N N N N N N -5.393 -15.605 13.594 -7.778 -0.468 0.554 H12 A1L7W 36 A1L7W H13 H13 H 0 1 N N N N N N -3.384 -16.886 14.276 -6.378 -2.442 0.980 H13 A1L7W 37 A1L7W H14 H14 H 0 1 N N N N N N -2.268 -18.369 12.663 -3.942 -2.318 0.687 H14 A1L7W 38 A1L7W H15 H15 H 0 1 N N N N N N -0.602 -21.431 6.810 2.034 0.167 -0.607 H15 A1L7W 39 A1L7W H16 H16 H 0 1 N N N N N N 1.137 -17.872 0.621 8.144 3.338 0.772 H16 A1L7W 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L7W N17 C09 DOUB N N 1 A1L7W C09 N08 SING N N 2 A1L7W C07 N08 SING N N 3 A1L7W C07 C06 SING N N 4 A1L7W N08 C18 SING N N 5 A1L7W C06 C05 SING N N 6 A1L7W C05 C18 SING N N 7 A1L7W C05 C04 SING N N 8 A1L7W C04 N03 SING N N 9 A1L7W N03 C02 SING N N 10 A1L7W O01 C02 DOUB N N 11 A1L7W C02 C19 SING N N 12 A1L7W C19 O31 SING Y N 13 A1L7W C19 N20 DOUB Y N 14 A1L7W O31 C22 SING Y N 15 A1L7W N20 N21 SING Y N 16 A1L7W C22 N21 DOUB Y N 17 A1L7W C22 C23 SING N N 18 A1L7W C24 C23 DOUB Y N 19 A1L7W C24 C25 SING Y N 20 A1L7W N27 C26 TRIP N N 21 A1L7W C23 C30 SING Y N 22 A1L7W C26 C25 SING N N 23 A1L7W C25 C28 DOUB Y N 24 A1L7W C30 C29 DOUB Y N 25 A1L7W C28 C29 SING Y N 26 A1L7W C04 H1 SING N N 27 A1L7W C04 H2 SING N N 28 A1L7W C05 H3 SING N N 29 A1L7W C06 H4 SING N N 30 A1L7W C06 H5 SING N N 31 A1L7W C07 H6 SING N N 32 A1L7W C07 H7 SING N N 33 A1L7W C09 H8 SING N N 34 A1L7W C18 H9 SING N N 35 A1L7W C18 H10 SING N N 36 A1L7W C24 H11 SING N N 37 A1L7W C28 H12 SING N N 38 A1L7W C29 H13 SING N N 39 A1L7W C30 H14 SING N N 40 A1L7W N03 H15 SING N N 41 A1L7W N17 H16 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L7W InChI InChI 1.06 "InChI=1S/C16H16N6O2/c17-7-11-2-1-3-13(6-11)15-20-21-16(24-15)14(23)19-8-12-4-5-22(9-12)10-18/h1-3,6,10,12,18H,4-5,8-9H2,(H,19,23)/b18-10-/t12-/m0/s1" A1L7W InChIKey InChI 1.06 WRBUPGZBRUFZCK-XACIZNRCSA-N A1L7W SMILES_CANONICAL CACTVS 3.385 "N=CN1CC[C@@H](CNC(=O)c2oc(nn2)c3cccc(c3)C#N)C1" A1L7W SMILES CACTVS 3.385 "N=CN1CC[CH](CNC(=O)c2oc(nn2)c3cccc(c3)C#N)C1" A1L7W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\N1CC[C@H](C1)CNC(=O)c2nnc(o2)c3cccc(c3)C#N" A1L7W SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)c2nnc(o2)C(=O)NCC3CCN(C3)C=N)C#N" # _pdbx_chem_comp_identifier.comp_id A1L7W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(3-cyanophenyl)-~{N}-[[(3~{S})-1-(iminomethyl)pyrrolidin-3-yl]methyl]-1,3,4-oxadiazole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L7W "Create component" 2025-02-26 PDBJ A1L7W "Modify PCM" 2025-02-26 PDBJ A1L7W "Initial release" 2025-05-21 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L7W _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C09 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #