data_A1L8J # _chem_comp.id A1L8J _chem_comp.name 2-HYDROXY-3-FARNESYL-1,4-NAPHTHOQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]naphthalene-1,4-dione" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-05 _chem_comp.pdbx_modified_date 2026-02-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.504 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L8J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9M4M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L8J C1 C1 C 0 1 Y N N N N N -31.629 22.150 22.426 -4.303 0.618 0.746 C1 A1L8J 1 A1L8J C2 C2 C 0 1 Y N N N N N -32.086 22.335 21.111 -4.663 1.344 1.875 C2 A1L8J 2 A1L8J C3 C3 C 0 1 Y N N N N N -33.423 22.184 20.821 -5.532 2.418 1.755 C3 A1L8J 3 A1L8J C4 C4 C 0 1 Y N N N N N -34.335 21.824 21.801 -6.043 2.772 0.522 C4 A1L8J 4 A1L8J C5 C5 C 0 1 Y N N N N N -33.894 21.641 23.116 -5.693 2.058 -0.614 C5 A1L8J 5 A1L8J C6 C6 C 0 1 Y N N N N N -32.546 21.811 23.423 -4.818 0.982 -0.511 C6 A1L8J 6 A1L8J C8 C7 C 0 1 N N N N N N -28.215 22.222 24.444 -2.062 -2.451 -0.241 C8 A1L8J 7 A1L8J C9 C8 C 0 1 N N N N N N -27.689 23.620 24.552 -0.640 -1.954 -0.281 C9 A1L8J 8 A1L8J C10 C9 C 0 1 N N N N N N -27.064 24.088 25.644 0.176 -2.223 0.709 C10 A1L8J 9 A1L8J C11 C10 C 0 1 N N N N N N -26.887 23.282 26.909 -0.343 -2.908 1.947 C11 A1L8J 10 A1L8J C12 C11 C 0 1 N N N N N N -26.591 25.528 25.568 1.632 -1.847 0.609 C12 A1L8J 11 A1L8J C13 C12 C 0 1 N N N N N N -25.129 25.669 25.956 1.854 -0.489 1.276 C13 A1L8J 12 A1L8J C14 C13 C 0 1 N N N N N N -24.179 24.763 25.191 3.310 -0.113 1.177 C14 A1L8J 13 A1L8J O O1 O 0 1 N N N N N N -29.349 22.637 21.855 -2.927 -0.857 1.930 O A1L8J 14 A1L8J C C14 C 0 1 N N N N N N -30.174 22.333 22.741 -3.378 -0.533 0.848 C A1L8J 15 A1L8J C7 C15 C 0 1 N N N N N N -29.685 22.119 24.111 -3.006 -1.281 -0.356 C7 A1L8J 16 A1L8J C23 C16 C 0 1 N N N N N N -30.652 21.759 25.160 -3.495 -0.938 -1.565 C23 A1L8J 17 A1L8J O1 O2 O 0 1 N N N N N N -30.250 21.583 26.439 -3.135 -1.647 -2.659 O1 A1L8J 18 A1L8J C24 C17 C 0 1 N N N N N N -32.084 21.597 24.830 -4.424 0.208 -1.707 C24 A1L8J 19 A1L8J O2 O3 O 0 1 N N N N N N -32.897 21.281 25.735 -4.860 0.509 -2.800 O2 A1L8J 20 A1L8J C15 C18 C 0 1 N N N N N N -23.374 25.135 24.179 3.662 0.987 0.557 C15 A1L8J 21 A1L8J C16 C19 C 0 1 N N N N N N -23.311 26.551 23.673 2.630 1.796 -0.185 C16 A1L8J 22 A1L8J C17 C20 C 0 1 N N N N N N -22.461 24.103 23.551 5.098 1.442 0.587 C17 A1L8J 23 A1L8J C18 C21 C 0 1 N N N N N N -22.846 23.715 22.120 5.819 0.939 -0.665 C18 A1L8J 24 A1L8J C19 C22 C 0 1 N N N N N N -24.075 22.843 22.110 7.255 1.395 -0.635 C19 A1L8J 25 A1L8J C20 C23 C 0 1 N N N N N N -24.645 22.374 20.987 8.221 0.512 -0.580 C20 A1L8J 26 A1L8J C21 C24 C 0 1 N N N N N N -24.154 22.639 19.593 9.658 0.964 -0.620 C21 A1L8J 27 A1L8J C22 C25 C 0 1 N N N N N N -25.868 21.530 21.125 7.896 -0.956 -0.478 C22 A1L8J 28 A1L8J H1 H1 H 0 1 N N N N N N -31.389 22.595 20.328 -4.268 1.071 2.842 H1 A1L8J 29 A1L8J H2 H2 H 0 1 N N N N N N -33.768 22.349 19.811 -5.811 2.981 2.633 H2 A1L8J 30 A1L8J H3 H3 H 0 1 N N N N N N -35.377 21.686 21.552 -6.719 3.610 0.441 H3 A1L8J 31 A1L8J H4 H4 H 0 1 N N N N N N -34.596 21.369 23.890 -6.096 2.338 -1.576 H4 A1L8J 32 A1L8J H5 H5 H 0 1 N N N N N N -28.047 21.718 25.407 -2.231 -3.136 -1.072 H5 A1L8J 33 A1L8J H6 H6 H 0 1 N N N N N N -27.649 21.704 23.656 -2.240 -2.970 0.700 H6 A1L8J 34 A1L8J H7 H7 H 0 1 N N N N N N -27.819 24.284 23.710 -0.292 -1.377 -1.125 H7 A1L8J 35 A1L8J H8 H8 H 0 1 N N N N N N -26.346 23.883 27.655 -0.346 -3.987 1.791 H8 A1L8J 36 A1L8J H9 H9 H 0 1 N N N N N N -27.874 23.005 27.308 0.301 -2.666 2.793 H9 A1L8J 37 A1L8J H10 H10 H 0 1 N N N N N N -26.312 22.371 26.686 -1.357 -2.568 2.153 H10 A1L8J 38 A1L8J H11 H11 H 0 1 N N N N N N -26.721 25.891 24.538 2.237 -2.602 1.111 H11 A1L8J 39 A1L8J H12 H12 H 0 1 N N N N N N -27.200 26.138 26.251 1.921 -1.789 -0.440 H12 A1L8J 40 A1L8J H13 H13 H 0 1 N N N N N N -25.035 25.438 27.027 1.249 0.266 0.775 H13 A1L8J 41 A1L8J H14 H14 H 0 1 N N N N N N -24.826 26.711 25.778 1.565 -0.548 2.326 H14 A1L8J 42 A1L8J H15 H15 H 0 1 N N N N N N -24.147 23.725 25.487 4.064 -0.750 1.616 H15 A1L8J 43 A1L8J H16 H16 H 0 1 N N N N N N -30.999 21.358 26.979 -3.533 -1.331 -3.482 H16 A1L8J 44 A1L8J H17 H17 H 0 1 N N N N N N -24.030 27.171 24.228 2.132 2.473 0.508 H17 A1L8J 45 A1L8J H18 H18 H 0 1 N N N N N N -22.295 26.948 23.819 3.118 2.374 -0.970 H18 A1L8J 46 A1L8J H19 H19 H 0 1 N N N N N N -23.561 26.569 22.602 1.895 1.126 -0.631 H19 A1L8J 47 A1L8J H20 H20 H 0 1 N N N N N N -22.485 23.196 24.173 5.134 2.531 0.614 H20 A1L8J 48 A1L8J H21 H21 H 0 1 N N N N N N -21.439 24.510 23.535 5.588 1.040 1.474 H21 A1L8J 49 A1L8J H22 H22 H 0 1 N N N N N N -22.012 23.166 21.659 5.784 -0.150 -0.692 H22 A1L8J 50 A1L8J H23 H23 H 0 1 N N N N N N -23.048 24.628 21.541 5.329 1.341 -1.552 H23 A1L8J 51 A1L8J H24 H24 H 0 1 N N N N N N -24.522 22.581 23.057 7.488 2.449 -0.659 H24 A1L8J 52 A1L8J H25 H25 H 0 1 N N N N N N -23.253 23.269 19.635 10.314 0.095 -0.564 H25 A1L8J 53 A1L8J H26 H26 H 0 1 N N N N N N -23.912 21.685 19.102 9.845 1.501 -1.550 H26 A1L8J 54 A1L8J H27 H27 H 0 1 N N N N N N -24.937 23.157 19.021 9.855 1.622 0.226 H27 A1L8J 55 A1L8J H28 H28 H 0 1 N N N N N N -26.117 21.416 22.190 7.720 -1.360 -1.475 H28 A1L8J 56 A1L8J H29 H29 H 0 1 N N N N N N -26.707 22.012 20.602 8.730 -1.482 -0.014 H29 A1L8J 57 A1L8J H30 H30 H 0 1 N N N N N N -25.682 20.540 20.684 7.000 -1.088 0.130 H30 A1L8J 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L8J C21 C20 SING N N 1 A1L8J C3 C2 DOUB Y N 2 A1L8J C3 C4 SING Y N 3 A1L8J C20 C22 SING N N 4 A1L8J C20 C19 DOUB N N 5 A1L8J C2 C1 SING Y N 6 A1L8J C4 C5 DOUB Y N 7 A1L8J O C DOUB N N 8 A1L8J C19 C18 SING N N 9 A1L8J C18 C17 SING N N 10 A1L8J C1 C SING N N 11 A1L8J C1 C6 DOUB Y N 12 A1L8J C C7 SING N N 13 A1L8J C5 C6 SING Y N 14 A1L8J C6 C24 SING N N 15 A1L8J C17 C15 SING N N 16 A1L8J C16 C15 SING N N 17 A1L8J C7 C8 SING N N 18 A1L8J C7 C23 DOUB N N 19 A1L8J C15 C14 DOUB N E 20 A1L8J C8 C9 SING N N 21 A1L8J C9 C10 DOUB N E 22 A1L8J C24 C23 SING N N 23 A1L8J C24 O2 DOUB N N 24 A1L8J C23 O1 SING N N 25 A1L8J C14 C13 SING N N 26 A1L8J C12 C10 SING N N 27 A1L8J C12 C13 SING N N 28 A1L8J C10 C11 SING N N 29 A1L8J C2 H1 SING N N 30 A1L8J C3 H2 SING N N 31 A1L8J C4 H3 SING N N 32 A1L8J C5 H4 SING N N 33 A1L8J C8 H5 SING N N 34 A1L8J C8 H6 SING N N 35 A1L8J C9 H7 SING N N 36 A1L8J C11 H8 SING N N 37 A1L8J C11 H9 SING N N 38 A1L8J C11 H10 SING N N 39 A1L8J C12 H11 SING N N 40 A1L8J C12 H12 SING N N 41 A1L8J C13 H13 SING N N 42 A1L8J C13 H14 SING N N 43 A1L8J C14 H15 SING N N 44 A1L8J O1 H16 SING N N 45 A1L8J C16 H17 SING N N 46 A1L8J C16 H18 SING N N 47 A1L8J C16 H19 SING N N 48 A1L8J C17 H20 SING N N 49 A1L8J C17 H21 SING N N 50 A1L8J C18 H22 SING N N 51 A1L8J C18 H23 SING N N 52 A1L8J C19 H24 SING N N 53 A1L8J C21 H25 SING N N 54 A1L8J C21 H26 SING N N 55 A1L8J C21 H27 SING N N 56 A1L8J C22 H28 SING N N 57 A1L8J C22 H29 SING N N 58 A1L8J C22 H30 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L8J InChI InChI 1.06 "InChI=1S/C25H30O3/c1-17(2)9-7-10-18(3)11-8-12-19(4)15-16-22-23(26)20-13-5-6-14-21(20)24(27)25(22)28/h5-6,9,11,13-15,28H,7-8,10,12,16H2,1-4H3/b18-11+,19-15+" A1L8J InChIKey InChI 1.06 RVUBWVZWMHPOJL-CFBAGHHKSA-N A1L8J SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCCC(/C)=C/CCC(/C)=C/CC1=C(O)C(=O)c2ccccc2C1=O" A1L8J SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CCCC(C)=CCC1=C(O)C(=O)c2ccccc2C1=O" A1L8J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/CC/C(=C/CC1=C(C(=O)c2ccccc2C1=O)O)/C)/C)C" A1L8J SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CCCC(=CCC1=C(C(=O)c2ccccc2C1=O)O)C)C)C" # _pdbx_chem_comp_identifier.comp_id A1L8J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]naphthalene-1,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L8J "Create component" 2025-03-05 PDBJ A1L8J "Initial release" 2026-03-04 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1L8J _pdbx_chem_comp_synonyms.name "2-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]naphthalene-1,4-dione" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #