data_A1L8R # _chem_comp.id A1L8R _chem_comp.name "N-[3-[4-[3-(acridin-9-ylamino)propyl]piperazin-1-yl]propyl]acridin-9-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H38 N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-27 _chem_comp.pdbx_modified_date 2025-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.727 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L8R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9MBW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L8R C10 C1 C 0 1 Y N N N N N -16.459 12.828 -8.845 -7.595 1.523 0.027 C10 A1L8R 1 A1L8R C13 C2 C 0 1 Y N N N N N -16.290 10.793 -6.960 -9.459 -0.240 -1.083 C13 A1L8R 2 A1L8R C15 C3 C 0 1 N N N N N N -19.069 14.382 -12.174 -3.043 1.828 0.538 C15 A1L8R 3 A1L8R C17 C4 C 0 1 N N N N N N -22.425 15.088 -11.322 -0.188 2.325 1.033 C17 A1L8R 4 A1L8R C20 C5 C 0 1 N N N N N N -22.510 16.178 -13.762 0.842 4.695 -0.201 C20 A1L8R 5 A1L8R C21 C6 C 0 1 N N N N N N -23.785 17.544 -12.622 2.474 2.916 -0.012 C21 A1L8R 6 A1L8R C22 C7 C 0 1 N N N N N N -25.270 17.904 -12.705 3.489 2.281 0.941 C22 A1L8R 7 A1L8R C24 C8 C 0 1 Y N N N N N -27.335 20.966 -12.006 6.012 -0.357 0.466 C24 A1L8R 8 A1L8R C26 C9 C 0 1 Y N N N N N -27.523 22.199 -12.540 7.155 -0.075 -0.308 C26 A1L8R 9 A1L8R C28 C10 C 0 1 Y N N N N N -27.644 19.512 -10.117 4.485 -2.060 1.339 C28 A1L8R 10 A1L8R C01 C11 C 0 1 Y N N N N N -19.210 8.506 -12.079 -4.331 -3.597 0.467 C01 A1L8R 11 A1L8R C02 C12 C 0 1 Y N N N N N -18.715 9.771 -11.856 -4.547 -2.262 0.615 C02 A1L8R 12 A1L8R C03 C13 C 0 1 Y N N N N N -18.082 10.102 -10.643 -5.770 -1.705 0.204 C03 A1L8R 13 A1L8R C04 C14 C 0 1 Y N N N N N -17.980 9.081 -9.668 -6.768 -2.542 -0.361 C04 A1L8R 14 A1L8R C05 C15 C 0 1 Y N N N N N -18.497 7.797 -9.917 -6.503 -3.920 -0.496 C05 A1L8R 15 A1L8R C06 C16 C 0 1 Y N N N N N -19.110 7.522 -11.128 -5.308 -4.423 -0.088 C06 A1L8R 16 A1L8R C07 C17 C 0 1 Y N N N N N -17.565 11.370 -10.377 -6.023 -0.326 0.348 C07 A1L8R 17 A1L8R C08 C18 C 0 1 Y N N N N N -16.884 10.555 -8.198 -8.217 -0.741 -0.644 C08 A1L8R 18 A1L8R C09 C19 C 0 1 Y N N N N N -16.970 11.571 -9.151 -7.272 0.160 -0.086 C09 A1L8R 19 A1L8R C11 C20 C 0 1 Y N N N N N -15.868 13.038 -7.610 -8.809 1.966 -0.400 C11 A1L8R 20 A1L8R C12 C21 C 0 1 Y N N N N N -15.779 12.033 -6.674 -9.738 1.084 -0.953 C12 A1L8R 21 A1L8R C14 C22 C 0 1 N N N N N N -18.724 12.891 -12.166 -4.122 0.966 -0.122 C14 A1L8R 22 A1L8R C16 C23 C 0 1 N N N N N N -20.374 14.607 -11.400 -2.044 2.296 -0.523 C16 A1L8R 23 A1L8R C18 C24 C 0 1 N N N N N N -21.252 15.816 -12.960 -0.171 3.783 -0.900 C18 A1L8R 24 A1L8R C19 C25 C 0 1 N N N N N N -23.726 15.447 -12.038 0.824 3.237 1.731 C19 A1L8R 25 A1L8R C23 C26 C 0 1 N N N N N N -25.373 19.427 -12.583 4.335 1.259 0.178 C23 A1L8R 26 A1L8R C25 C27 C 0 1 Y N N N N N -27.779 20.765 -10.721 5.615 -1.704 0.583 C25 A1L8R 27 A1L8R C27 C28 C 0 1 Y N N N N N -28.375 21.803 -10.000 6.368 -2.713 -0.073 C27 A1L8R 28 A1L8R C29 C29 C 0 1 Y N N N N N -28.098 23.229 -11.808 7.855 -1.140 -0.933 C29 A1L8R 29 A1L8R C30 C30 C 0 1 Y N N N N N -27.099 22.429 -13.837 7.610 1.245 -0.469 C30 A1L8R 30 A1L8R C31 C31 C 0 1 Y N N N N N -28.829 21.607 -8.700 5.960 -4.056 0.052 C31 A1L8R 31 A1L8R C32 C32 C 0 1 Y N N N N N -28.101 19.339 -8.816 4.124 -3.369 1.434 C32 A1L8R 32 A1L8R C33 C33 C 0 1 Y N N N N N -28.239 24.483 -12.379 8.997 -0.843 -1.705 C33 A1L8R 33 A1L8R C34 C34 C 0 1 Y N N N N N -27.257 23.670 -14.384 8.717 1.489 -1.222 C34 A1L8R 34 A1L8R C35 C35 C 0 1 Y N N N N N -28.691 20.372 -8.113 4.861 -4.363 0.792 C35 A1L8R 35 A1L8R C36 C36 C 0 1 Y N N N N N -27.822 24.690 -13.671 9.407 0.446 -1.838 C36 A1L8R 36 A1L8R N01 N1 N 0 1 Y N N N N N -17.388 9.338 -8.493 -7.932 -2.037 -0.766 N01 A1L8R 37 A1L8R N02 N2 N 0 1 N N N N N N -17.589 12.514 -11.313 -5.081 0.517 0.896 N02 A1L8R 38 A1L8R N03 N3 N 0 1 N N N N N N -21.445 14.788 -12.153 -1.009 3.123 0.111 N03 A1L8R 39 A1L8R N04 N4 N 0 1 N N N N N N -26.723 19.920 -12.826 5.309 0.650 1.092 N04 A1L8R 40 A1L8R N05 N5 N 0 1 N N N N N N -23.595 16.313 -13.024 1.663 3.897 0.720 N05 A1L8R 41 A1L8R N06 N6 N 0 1 Y N N N N N -28.512 23.010 -10.558 7.443 -2.399 -0.795 N06 A1L8R 42 A1L8R H1 H1 H 0 1 N N N N N N -16.522 13.632 -9.563 -6.885 2.216 0.455 H1 A1L8R 43 A1L8R H2 H2 H 0 1 N N N N N N -16.232 10.002 -6.227 -10.190 -0.907 -1.514 H2 A1L8R 44 A1L8R H3 H3 H 0 1 N N N N N N -18.257 14.949 -11.696 -3.508 2.695 1.006 H3 A1L8R 45 A1L8R H4 H4 H 0 1 N N N N N N -19.194 14.724 -13.212 -2.522 1.242 1.294 H4 A1L8R 46 A1L8R H5 H5 H 0 1 N N N N N N -22.611 14.221 -10.671 0.342 1.555 0.473 H5 A1L8R 47 A1L8R H6 H6 H 0 1 N N N N N N -22.114 15.947 -10.709 -0.830 1.857 1.779 H6 A1L8R 48 A1L8R H7 H7 H 0 1 N N N N N N -22.690 15.383 -14.500 1.484 5.163 -0.947 H7 A1L8R 49 A1L8R H8 H8 H 0 1 N N N N N N -22.326 17.129 -14.284 0.312 5.466 0.358 H8 A1L8R 50 A1L8R H9 H9 H 0 1 N N N N N N -23.445 17.643 -11.581 3.002 3.415 -0.825 H9 A1L8R 51 A1L8R H10 H10 H 0 1 N N N N N N -23.209 18.228 -13.262 1.826 2.141 -0.421 H10 A1L8R 52 A1L8R H11 H11 H 0 1 N N N N N N -25.685 17.574 -13.669 4.137 3.056 1.350 H11 A1L8R 53 A1L8R H12 H12 H 0 1 N N N N N N -25.821 17.422 -11.884 2.962 1.782 1.753 H12 A1L8R 54 A1L8R H13 H13 H 0 1 N N N N N N -27.192 18.691 -10.653 3.906 -1.300 1.841 H13 A1L8R 55 A1L8R H14 H14 H 0 1 N N N N N N -19.687 8.283 -13.022 -3.390 -4.023 0.783 H14 A1L8R 56 A1L8R H15 H15 H 0 1 N N N N N N -18.814 10.523 -12.625 -3.782 -1.633 1.046 H15 A1L8R 57 A1L8R H16 H16 H 0 1 N N N N N N -18.416 7.026 -9.165 -7.248 -4.575 -0.923 H16 A1L8R 58 A1L8R H17 H17 H 0 1 N N N N N N -19.508 6.537 -11.323 -5.112 -5.479 -0.195 H17 A1L8R 59 A1L8R H18 H18 H 0 1 N N N N N N -15.468 14.013 -7.376 -9.057 3.013 -0.308 H18 A1L8R 60 A1L8R H19 H19 H 0 1 N N N N N N -15.309 12.220 -5.720 -10.691 1.462 -1.291 H19 A1L8R 61 A1L8R H20 H20 H 0 1 N N N N N N -19.609 12.339 -11.817 -4.642 1.553 -0.879 H20 A1L8R 62 A1L8R H21 H21 H 0 1 N N N N N N -18.488 12.591 -13.198 -3.657 0.099 -0.591 H21 A1L8R 63 A1L8R H22 H22 H 0 1 N N N N N N -20.549 13.727 -10.763 -1.579 1.428 -0.991 H22 A1L8R 64 A1L8R H23 H23 H 0 1 N N N N N N -20.247 15.498 -10.768 -2.565 2.882 -1.280 H23 A1L8R 65 A1L8R H24 H24 H 0 1 N N N N N N -20.445 15.565 -13.664 -0.799 4.378 -1.562 H24 A1L8R 66 A1L8R H25 H25 H 0 1 N N N N N N -20.955 16.687 -12.357 0.360 3.029 -1.481 H25 A1L8R 67 A1L8R H26 H26 H 0 1 N N N N N N -24.417 15.875 -11.297 0.293 3.991 2.312 H26 A1L8R 68 A1L8R H27 H27 H 0 1 N N N N N N -24.156 14.522 -12.450 1.452 2.643 2.394 H27 A1L8R 69 A1L8R H28 H28 H 0 1 N N N N N N -24.693 19.886 -13.316 3.687 0.484 -0.232 H28 A1L8R 70 A1L8R H29 H29 H 0 1 N N N N N N -25.069 19.720 -11.567 4.862 1.758 -0.635 H29 A1L8R 71 A1L8R H30 H30 H 0 1 N N N N N N -26.647 21.634 -14.412 7.083 2.062 0.002 H30 A1L8R 72 A1L8R H31 H31 H 0 1 N N N N N N -29.287 22.420 -8.156 6.518 -4.840 -0.438 H31 A1L8R 73 A1L8R H32 H32 H 0 1 N N N N N N -27.992 18.374 -8.343 3.255 -3.641 2.015 H32 A1L8R 74 A1L8R H33 H33 H 0 1 N N N N N N -28.674 25.293 -11.812 9.545 -1.638 -2.189 H33 A1L8R 75 A1L8R H34 H34 H 0 1 N N N N N N -26.930 23.849 -15.398 9.065 2.504 -1.344 H34 A1L8R 76 A1L8R H35 H35 H 0 1 N N N N N N -29.043 20.209 -7.105 4.555 -5.395 0.884 H35 A1L8R 77 A1L8R H36 H36 H 0 1 N N N N N N -27.941 25.663 -14.125 10.283 0.665 -2.431 H36 A1L8R 78 A1L8R H37 H37 H 0 1 N N N N N N -16.826 12.359 -11.941 -4.607 0.077 1.670 H37 A1L8R 79 A1L8R H39 H39 H 0 1 N N N N N N -26.729 20.264 -13.765 5.934 1.345 1.471 H39 A1L8R 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L8R C34 C30 DOUB Y N 1 A1L8R C34 C36 SING Y N 2 A1L8R C30 C26 SING Y N 3 A1L8R C20 N05 SING N N 4 A1L8R C20 C18 SING N N 5 A1L8R C36 C33 DOUB Y N 6 A1L8R N05 C21 SING N N 7 A1L8R N05 C19 SING N N 8 A1L8R C18 N03 SING N N 9 A1L8R N04 C23 SING N N 10 A1L8R N04 C24 SING N N 11 A1L8R C22 C21 SING N N 12 A1L8R C22 C23 SING N N 13 A1L8R C26 C24 DOUB Y N 14 A1L8R C26 C29 SING Y N 15 A1L8R C33 C29 SING Y N 16 A1L8R C15 C14 SING N N 17 A1L8R C15 C16 SING N N 18 A1L8R C14 N02 SING N N 19 A1L8R N03 C16 SING N N 20 A1L8R N03 C17 SING N N 21 A1L8R C01 C02 DOUB Y N 22 A1L8R C01 C06 SING Y N 23 A1L8R C19 C17 SING N N 24 A1L8R C24 C25 SING Y N 25 A1L8R C02 C03 SING Y N 26 A1L8R C29 N06 DOUB Y N 27 A1L8R N02 C07 SING N N 28 A1L8R C06 C05 DOUB Y N 29 A1L8R C25 C28 DOUB Y N 30 A1L8R C25 C27 SING Y N 31 A1L8R C03 C07 DOUB Y N 32 A1L8R C03 C04 SING Y N 33 A1L8R N06 C27 SING Y N 34 A1L8R C07 C09 SING Y N 35 A1L8R C28 C32 SING Y N 36 A1L8R C27 C31 DOUB Y N 37 A1L8R C05 C04 SING Y N 38 A1L8R C04 N01 DOUB Y N 39 A1L8R C09 C10 DOUB Y N 40 A1L8R C09 C08 SING Y N 41 A1L8R C10 C11 SING Y N 42 A1L8R C32 C35 DOUB Y N 43 A1L8R C31 C35 SING Y N 44 A1L8R N01 C08 SING Y N 45 A1L8R C08 C13 DOUB Y N 46 A1L8R C11 C12 DOUB Y N 47 A1L8R C13 C12 SING Y N 48 A1L8R C10 H1 SING N N 49 A1L8R C13 H2 SING N N 50 A1L8R C15 H3 SING N N 51 A1L8R C15 H4 SING N N 52 A1L8R C17 H5 SING N N 53 A1L8R C17 H6 SING N N 54 A1L8R C20 H7 SING N N 55 A1L8R C20 H8 SING N N 56 A1L8R C21 H9 SING N N 57 A1L8R C21 H10 SING N N 58 A1L8R C22 H11 SING N N 59 A1L8R C22 H12 SING N N 60 A1L8R C28 H13 SING N N 61 A1L8R C01 H14 SING N N 62 A1L8R C02 H15 SING N N 63 A1L8R C05 H16 SING N N 64 A1L8R C06 H17 SING N N 65 A1L8R C11 H18 SING N N 66 A1L8R C12 H19 SING N N 67 A1L8R C14 H20 SING N N 68 A1L8R C14 H21 SING N N 69 A1L8R C16 H22 SING N N 70 A1L8R C16 H23 SING N N 71 A1L8R C18 H24 SING N N 72 A1L8R C18 H25 SING N N 73 A1L8R C19 H26 SING N N 74 A1L8R C19 H27 SING N N 75 A1L8R C23 H28 SING N N 76 A1L8R C23 H29 SING N N 77 A1L8R C30 H30 SING N N 78 A1L8R C31 H31 SING N N 79 A1L8R C32 H32 SING N N 80 A1L8R C33 H33 SING N N 81 A1L8R C34 H34 SING N N 82 A1L8R C35 H35 SING N N 83 A1L8R C36 H36 SING N N 84 A1L8R N02 H37 SING N N 85 A1L8R N04 H39 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L8R InChI InChI 1.06 "InChI=1S/C36H38N6/c1-5-15-31-27(11-1)35(28-12-2-6-16-32(28)39-31)37-19-9-21-41-23-25-42(26-24-41)22-10-20-38-36-29-13-3-7-17-33(29)40-34-18-8-4-14-30(34)36/h1-8,11-18H,9-10,19-26H2,(H,37,39)(H,38,40)" A1L8R InChIKey InChI 1.06 AAMSBOZZFRTUFD-UHFFFAOYSA-N A1L8R SMILES_CANONICAL CACTVS 3.385 "C(CNc1c2ccccc2nc3ccccc13)CN4CCN(CCCNc5c6ccccc6nc7ccccc57)CC4" A1L8R SMILES CACTVS 3.385 "C(CNc1c2ccccc2nc3ccccc13)CN4CCN(CCCNc5c6ccccc6nc7ccccc57)CC4" A1L8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c3ccccc3n2)NCCCN4CCN(CC4)CCCNc5c6ccccc6nc7c5cccc7" A1L8R SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c3ccccc3n2)NCCCN4CCN(CC4)CCCNc5c6ccccc6nc7c5cccc7" # _pdbx_chem_comp_identifier.comp_id A1L8R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[4-[3-(acridin-9-ylamino)propyl]piperazin-1-yl]propyl]acridin-9-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L8R "Create component" 2025-03-27 PDBJ A1L8R "Initial release" 2025-10-08 RCSB #