data_A1L8T # _chem_comp.id A1L8T _chem_comp.name "~{N}-[5-[[6-[(3~{R})-3-[3,5-bis(fluoranyl)phenyl]-1,2-oxazolidin-2-yl]pyrimidin-4-yl]amino]-2-[4-(4-cyclopropylpiperazin-1-yl)piperidin-1-yl]-4-methoxy-phenyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H44 F2 N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-03-28 _chem_comp.pdbx_modified_date 2025-11-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 662.772 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L8T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9U8C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L8T C02 C1 C 0 1 Y N N N N N -44.481 -9.423 33.829 5.496 -1.328 2.021 C02 A1L8T 1 A1L8T C03 C2 C 0 1 Y N N N N N -44.161 -9.743 32.506 4.764 -0.156 2.119 C03 A1L8T 2 A1L8T C04 C3 C 0 1 Y N N N N N -43.112 -9.098 31.831 5.314 1.040 1.698 C04 A1L8T 3 A1L8T C05 C4 C 0 1 N N R N N N -42.747 -9.459 30.359 4.517 2.314 1.804 C05 A1L8T 4 A1L8T C06 C5 C 0 1 N N N N N N -41.301 -10.200 30.389 5.431 3.483 2.237 C06 A1L8T 5 A1L8T C07 C6 C 0 1 N N N N N N -41.545 -11.395 30.851 4.912 4.655 1.365 C07 A1L8T 6 A1L8T C10 C7 C 0 1 Y N N N N N -44.909 -10.076 29.376 4.288 1.740 -0.474 C10 A1L8T 7 A1L8T C11 C8 C 0 1 Y N N N N N -45.595 -10.995 28.576 3.321 0.824 -0.876 C11 A1L8T 8 A1L8T C12 C9 C 0 1 Y N N N N N -46.882 -10.634 28.155 3.668 -0.123 -1.836 C12 A1L8T 9 A1L8T C14 C10 C 0 1 Y N N N N N -47.742 -12.957 27.258 1.410 -0.981 -1.832 C14 A1L8T 10 A1L8T C15 C11 C 0 1 Y N N N N N -48.897 -13.641 27.670 0.580 0.034 -2.300 C15 A1L8T 11 A1L8T C17 C12 C 0 1 N N N N N N -51.203 -13.235 27.480 0.154 1.967 -3.619 C17 A1L8T 12 A1L8T C18 C13 C 0 1 Y N N N N N -48.939 -15.049 27.608 -0.734 0.110 -1.867 C18 A1L8T 13 A1L8T C19 C14 C 0 1 Y N N N N N -47.831 -15.762 27.124 -1.223 -0.826 -0.968 C19 A1L8T 14 A1L8T C21 C15 C 0 1 N N N N N N -46.952 -18.077 27.976 -3.486 -0.855 -1.659 C21 A1L8T 15 A1L8T C22 C16 C 0 1 N N N N N N -47.455 -19.518 28.124 -4.921 -0.913 -1.132 C22 A1L8T 16 A1L8T C23 C17 C 0 1 N N N N N N -47.614 -20.181 26.823 -5.214 0.352 -0.321 C23 A1L8T 17 A1L8T C25 C18 C 0 1 N N N N N N -49.003 -21.953 26.596 -6.886 1.477 1.021 C25 A1L8T 18 A1L8T C26 C19 C 0 1 N N N N N N -49.035 -23.499 26.692 -8.275 1.324 1.647 C26 A1L8T 19 A1L8T C28 C20 C 0 1 N N N N N N -47.537 -25.026 27.264 -10.626 1.042 1.140 C28 A1L8T 20 A1L8T C29 C21 C 0 1 N N N N N N -47.735 -26.442 26.698 -11.673 2.007 0.582 C29 A1L8T 21 A1L8T C30 C22 C 0 1 N N N N N N -48.149 -26.131 28.139 -11.109 2.220 1.988 C30 A1L8T 22 A1L8T C31 C23 C 0 1 N N N N N N -46.794 -23.264 26.191 -8.953 -0.083 -0.202 C31 A1L8T 23 A1L8T C32 C24 C 0 1 N N N N N N -46.791 -22.151 27.258 -7.565 0.070 -0.828 C32 A1L8T 24 A1L8T C33 C25 C 0 1 N N N N N N -48.532 -19.459 25.933 -4.198 0.465 0.819 C33 A1L8T 25 A1L8T C34 C26 C 0 1 N N N N N N -48.064 -18.004 25.726 -2.783 0.483 0.236 C34 A1L8T 26 A1L8T C35 C27 C 0 1 Y N N N N N -46.671 -15.083 26.699 -0.393 -1.843 -0.500 C35 A1L8T 27 A1L8T C37 C28 C 0 1 N N N N N N -44.092 -15.584 26.543 -0.379 -4.039 0.425 C37 A1L8T 28 A1L8T C38 C29 C 0 1 N N N N N N -42.974 -16.475 25.961 -0.956 -5.076 1.354 C38 A1L8T 29 A1L8T C39 C30 C 0 1 N N N N N N -42.343 -15.839 24.727 -0.204 -6.396 1.175 C39 A1L8T 30 A1L8T C41 C31 C 0 1 Y N N N N N -46.633 -13.677 26.769 0.920 -1.922 -0.938 C41 A1L8T 31 A1L8T C43 C32 C 0 1 Y N N N N N -46.689 -8.619 29.270 5.792 0.768 -1.925 C43 A1L8T 32 A1L8T C45 C33 C 0 1 Y N N N N N -42.368 -8.131 32.495 6.595 1.068 1.180 C45 A1L8T 33 A1L8T C46 C34 C 0 1 Y N N N N N -42.694 -7.822 33.813 7.329 -0.103 1.081 C46 A1L8T 34 A1L8T C48 C35 C 0 1 Y N N N N N -43.740 -8.455 34.484 6.781 -1.300 1.507 C48 A1L8T 35 A1L8T F01 F1 F 0 1 N N N N N N -45.502 -10.043 34.491 4.958 -2.497 2.433 F01 A1L8T 36 A1L8T F47 F2 F 0 1 N N N N N N -41.980 -6.874 34.475 8.580 -0.075 0.574 F47 A1L8T 37 A1L8T N09 N1 N 0 1 N N N N N N -43.556 -10.341 29.885 3.991 2.702 0.479 N09 A1L8T 38 A1L8T N13 N2 N 0 1 N N N N N N -47.724 -11.479 27.306 2.741 -1.057 -2.271 N13 A1L8T 39 A1L8T N20 N3 N 0 1 N N N N N N -47.864 -17.245 27.058 -2.552 -0.748 -0.530 N20 A1L8T 40 A1L8T N24 N4 N 0 1 N N N N N N -47.929 -21.380 27.242 -6.571 0.276 0.235 N24 A1L8T 41 A1L8T N27 N5 N 0 1 N N N N N N -47.847 -24.129 26.384 -9.268 1.118 0.584 N27 A1L8T 42 A1L8T N36 N6 N 0 1 N N N N N N -45.505 -15.871 26.196 -0.888 -2.790 0.409 N36 A1L8T 43 A1L8T N42 N7 N 0 1 Y N N N N N -47.369 -9.461 28.515 4.905 -0.117 -2.332 N42 A1L8T 44 A1L8T N44 N8 N 0 1 Y N N N N N -45.473 -8.921 29.691 5.504 1.675 -1.014 N44 A1L8T 45 A1L8T O08 O1 O 0 1 N N N N N N -42.969 -11.713 30.388 4.582 4.000 0.119 O08 A1L8T 46 A1L8T O16 O2 O 0 1 N N N N N N -50.005 -12.911 28.150 1.060 0.953 -3.181 O16 A1L8T 47 A1L8T O40 O3 O 0 1 N N N N N N -43.782 -14.674 27.239 0.543 -4.327 -0.308 O40 A1L8T 48 A1L8T H031 H1 H 0 0 N N N N N N -44.733 -10.502 31.993 3.763 -0.177 2.524 H031 A1L8T 49 A1L8T H051 H2 H 0 0 N N N N N N -42.670 -8.542 29.756 3.699 2.189 2.514 H051 A1L8T 50 A1L8T H062 H3 H 0 0 N N N N N N -40.874 -10.256 29.377 5.303 3.703 3.297 H062 A1L8T 51 A1L8T H061 H4 H 0 0 N N N N N N -40.605 -9.664 31.051 6.475 3.263 2.013 H061 A1L8T 52 A1L8T H072 H5 H 0 0 N N N N N N -40.832 -12.123 30.437 4.025 5.105 1.811 H072 A1L8T 53 A1L8T H071 H6 H 0 0 N N N N N N -41.484 -11.405 31.949 5.691 5.402 1.218 H071 A1L8T 54 A1L8T H111 H7 H 0 0 N N N N N N -45.153 -11.940 28.295 2.327 0.846 -0.455 H111 A1L8T 55 A1L8T H173 H8 H 0 0 N N N N N N -52.029 -12.638 27.894 -0.699 1.503 -4.114 H173 A1L8T 56 A1L8T H172 H9 H 0 0 N N N N N N -51.094 -13.015 26.408 -0.193 2.540 -2.759 H172 A1L8T 57 A1L8T H171 H10 H 0 0 N N N N N N -51.421 -14.305 27.615 0.662 2.632 -4.317 H171 A1L8T 58 A1L8T H181 H11 H 0 0 N N N N N N -49.823 -15.578 27.933 -1.377 0.899 -2.229 H181 A1L8T 59 A1L8T H212 H12 H 0 0 N N N N N N -45.939 -18.096 27.549 -3.269 -1.761 -2.225 H212 A1L8T 60 A1L8T H211 H13 H 0 0 N N N N N N -46.922 -17.606 28.970 -3.372 0.014 -2.307 H211 A1L8T 61 A1L8T H222 H14 H 0 0 N N N N N N -46.731 -20.087 28.726 -5.614 -0.976 -1.971 H222 A1L8T 62 A1L8T H221 H15 H 0 0 N N N N N N -48.428 -19.504 28.637 -5.040 -1.789 -0.495 H221 A1L8T 63 A1L8T H231 H16 H 0 0 N N N N N N -46.627 -20.202 26.337 -5.133 1.226 -0.967 H231 A1L8T 64 A1L8T H251 H17 H 0 0 N N N N N N -49.928 -21.558 27.042 -6.876 2.351 0.370 H251 A1L8T 65 A1L8T H252 H18 H 0 0 N N N N N N -48.959 -21.672 25.533 -6.144 1.601 1.809 H252 A1L8T 66 A1L8T H261 H19 H 0 0 N N N N N N -49.308 -23.771 27.722 -8.278 0.466 2.319 H261 A1L8T 67 A1L8T H262 H20 H 0 0 N N N N N N -49.806 -23.868 25.999 -8.523 2.226 2.207 H262 A1L8T 68 A1L8T H281 H21 H 0 0 N N N N N N -46.478 -24.936 27.549 -10.962 0.045 1.426 H281 A1L8T 69 A1L8T H291 H22 H 0 0 N N N N N N -48.503 -26.626 25.933 -11.355 2.699 -0.198 H291 A1L8T 70 A1L8T H292 H23 H 0 0 N N N N N N -46.863 -27.083 26.503 -12.698 1.646 0.500 H292 A1L8T 71 A1L8T H301 H24 H 0 0 N N N N N N -49.215 -26.092 28.408 -11.763 1.998 2.832 H301 A1L8T 72 A1L8T H302 H25 H 0 0 N N N N N N -47.574 -26.549 28.978 -10.420 3.052 2.133 H302 A1L8T 73 A1L8T H311 H26 H 0 0 N N N N N N -45.850 -23.826 26.255 -9.696 -0.207 -0.990 H311 A1L8T 74 A1L8T H312 H27 H 0 0 N N N N N N -46.882 -22.807 25.194 -8.965 -0.957 0.449 H312 A1L8T 75 A1L8T H321 H28 H 0 0 N N N N N N -46.700 -22.618 28.250 -7.317 -0.831 -1.388 H321 A1L8T 76 A1L8T H322 H29 H 0 0 N N N N N N -45.924 -21.498 27.079 -7.562 0.928 -1.500 H322 A1L8T 77 A1L8T H332 H30 H 0 0 N N N N N N -48.565 -19.969 24.959 -4.374 1.386 1.375 H332 A1L8T 78 A1L8T H331 H31 H 0 0 N N N N N N -49.537 -19.454 26.379 -4.305 -0.390 1.488 H331 A1L8T 79 A1L8T H342 H32 H 0 0 N N N N N N -47.108 -18.016 25.181 -2.673 1.345 -0.421 H342 A1L8T 80 A1L8T H341 H33 H 0 0 N N N N N N -48.820 -17.473 25.129 -2.057 0.548 1.046 H341 A1L8T 81 A1L8T H381 H34 H 0 0 N N N N N N -43.401 -17.450 25.683 -0.855 -4.736 2.385 H381 A1L8T 82 A1L8T H382 H35 H 0 0 N N N N N N -42.197 -16.620 26.726 -2.011 -5.224 1.122 H382 A1L8T 83 A1L8T H392 H36 H 0 0 N N N N N N -41.552 -16.498 24.338 0.850 -6.247 1.407 H392 A1L8T 84 A1L8T H393 H37 H 0 0 N N N N N N -43.113 -15.695 23.955 -0.622 -7.146 1.847 H393 A1L8T 85 A1L8T H391 H38 H 0 0 N N N N N N -41.909 -14.865 24.998 -0.305 -6.735 0.144 H391 A1L8T 86 A1L8T H411 H39 H 0 0 N N N N N N -45.749 -13.147 26.446 1.563 -2.712 -0.579 H411 A1L8T 87 A1L8T H431 H40 H 0 0 N N N N N N -47.131 -7.673 29.547 6.786 0.745 -2.346 H431 A1L8T 88 A1L8T H451 H41 H 0 0 N N N N N N -41.552 -7.628 31.998 7.024 2.003 0.851 H451 A1L8T 89 A1L8T H481 H42 H 0 0 N N N N N N -43.970 -8.192 35.506 7.353 -2.213 1.435 H481 A1L8T 90 A1L8T H131 H43 H 0 0 N N N N N N -48.355 -11.005 26.692 3.012 -1.763 -2.878 H131 A1L8T 91 A1L8T H361 H46 H 0 0 N N N N N N -45.690 -16.642 25.586 -1.596 -2.547 1.026 H361 A1L8T 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L8T C02 F01 SING N N 1 A1L8T C03 C02 DOUB Y N 2 A1L8T C04 C03 SING Y N 3 A1L8T C06 C05 SING N N 4 A1L8T C07 C06 SING N N 5 A1L8T O08 C07 SING N N 6 A1L8T N09 O08 SING N N 7 A1L8T C10 N09 SING N N 8 A1L8T C11 C10 DOUB Y N 9 A1L8T C12 C11 SING Y N 10 A1L8T C14 N13 SING N N 11 A1L8T C15 C14 DOUB Y N 12 A1L8T C17 O16 SING N N 13 A1L8T O16 C15 SING N N 14 A1L8T C18 C15 SING Y N 15 A1L8T C19 C18 DOUB Y N 16 A1L8T C21 N20 SING N N 17 A1L8T C22 C21 SING N N 18 A1L8T C23 C22 SING N N 19 A1L8T C25 N24 SING N N 20 A1L8T C26 C25 SING N N 21 A1L8T N27 C26 SING N N 22 A1L8T C29 C28 SING N N 23 A1L8T C30 C29 SING N N 24 A1L8T C28 N27 SING N N 25 A1L8T C31 N27 SING N N 26 A1L8T C32 C31 SING N N 27 A1L8T N24 C23 SING N N 28 A1L8T C33 C23 SING N N 29 A1L8T C34 C33 SING N N 30 A1L8T N20 C19 SING N N 31 A1L8T C35 C19 SING Y N 32 A1L8T C37 N36 SING N N 33 A1L8T C39 C38 SING N N 34 A1L8T C38 C37 SING N N 35 A1L8T O40 C37 DOUB N N 36 A1L8T N36 C35 SING N N 37 A1L8T C41 C35 DOUB Y N 38 A1L8T N13 C12 SING N N 39 A1L8T N42 C12 DOUB Y N 40 A1L8T C43 N42 SING Y N 41 A1L8T N44 C43 DOUB Y N 42 A1L8T C05 C04 SING N N 43 A1L8T C45 C04 DOUB Y N 44 A1L8T C46 C45 SING Y N 45 A1L8T F47 C46 SING N N 46 A1L8T C48 C46 DOUB Y N 47 A1L8T C02 C48 SING Y N 48 A1L8T C05 N09 SING N N 49 A1L8T C10 N44 SING Y N 50 A1L8T C14 C41 SING Y N 51 A1L8T N20 C34 SING N N 52 A1L8T N24 C32 SING N N 53 A1L8T C28 C30 SING N N 54 A1L8T C03 H031 SING N N 55 A1L8T C05 H051 SING N N 56 A1L8T C06 H062 SING N N 57 A1L8T C06 H061 SING N N 58 A1L8T C07 H072 SING N N 59 A1L8T C07 H071 SING N N 60 A1L8T C11 H111 SING N N 61 A1L8T C17 H173 SING N N 62 A1L8T C17 H172 SING N N 63 A1L8T C17 H171 SING N N 64 A1L8T C18 H181 SING N N 65 A1L8T C21 H212 SING N N 66 A1L8T C21 H211 SING N N 67 A1L8T C22 H222 SING N N 68 A1L8T C22 H221 SING N N 69 A1L8T C23 H231 SING N N 70 A1L8T C25 H251 SING N N 71 A1L8T C25 H252 SING N N 72 A1L8T C26 H261 SING N N 73 A1L8T C26 H262 SING N N 74 A1L8T C28 H281 SING N N 75 A1L8T C29 H291 SING N N 76 A1L8T C29 H292 SING N N 77 A1L8T C30 H301 SING N N 78 A1L8T C30 H302 SING N N 79 A1L8T C31 H311 SING N N 80 A1L8T C31 H312 SING N N 81 A1L8T C32 H321 SING N N 82 A1L8T C32 H322 SING N N 83 A1L8T C33 H332 SING N N 84 A1L8T C33 H331 SING N N 85 A1L8T C34 H342 SING N N 86 A1L8T C34 H341 SING N N 87 A1L8T C38 H381 SING N N 88 A1L8T C38 H382 SING N N 89 A1L8T C39 H392 SING N N 90 A1L8T C39 H393 SING N N 91 A1L8T C39 H391 SING N N 92 A1L8T C41 H411 SING N N 93 A1L8T C43 H431 SING N N 94 A1L8T C45 H451 SING N N 95 A1L8T C48 H481 SING N N 96 A1L8T N13 H131 SING N N 97 A1L8T N36 H361 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L8T InChI InChI 1.06 "InChI=1S/C35H44F2N8O3/c1-3-35(46)41-28-19-29(40-33-21-34(39-22-38-33)45-30(8-15-48-45)23-16-24(36)18-25(37)17-23)32(47-2)20-31(28)44-9-6-27(7-10-44)43-13-11-42(12-14-43)26-4-5-26/h16-22,26-27,30H,3-15H2,1-2H3,(H,41,46)(H,38,39,40)/t30-/m1/s1" A1L8T InChIKey InChI 1.06 SZLYMLSXCABOBL-SSEXGKCCSA-N A1L8T SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cc(Nc2cc(ncn2)N3OCC[C@@H]3c4cc(F)cc(F)c4)c(OC)cc1N5CCC(CC5)N6CCN(CC6)C7CC7" A1L8T SMILES CACTVS 3.385 "CCC(=O)Nc1cc(Nc2cc(ncn2)N3OCC[CH]3c4cc(F)cc(F)c4)c(OC)cc1N5CCC(CC5)N6CCN(CC6)C7CC7" A1L8T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cc(c(cc1N2CCC(CC2)N3CCN(CC3)C4CC4)OC)Nc5cc(ncn5)N6[C@H](CCO6)c7cc(cc(c7)F)F" A1L8T SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cc(c(cc1N2CCC(CC2)N3CCN(CC3)C4CC4)OC)Nc5cc(ncn5)N6C(CCO6)c7cc(cc(c7)F)F" # _pdbx_chem_comp_identifier.comp_id A1L8T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[5-[[6-[(3~{R})-3-[3,5-bis(fluoranyl)phenyl]-1,2-oxazolidin-2-yl]pyrimidin-4-yl]amino]-2-[4-(4-cyclopropylpiperazin-1-yl)piperidin-1-yl]-4-methoxy-phenyl]propanamide" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L8T _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C39 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L8T "Create component" 2025-03-28 PDBJ A1L8T "Initial release" 2025-11-12 RCSB #