data_A1L8V
# 
_chem_comp.id                                    A1L8V 
_chem_comp.name                                  "2,5,6-tris(azanyl)-5~{H}-pyrimidin-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C4 H7 N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2025-04-01 
_chem_comp.pdbx_modified_date                    2026-03-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        141.131 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1L8V 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9U8O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1L8V C02 C1 C 0 1 N N N N N N -4.361 18.978 -10.550 -1.526 -0.095 0.065  C02 A1L8V 1  
A1L8V C04 C2 C 0 1 N N N N N N -2.152 18.237 -11.598 0.476  -1.240 -0.179 C04 A1L8V 2  
A1L8V C06 C3 C 0 1 N N S N N N -2.083 17.111 -10.599 1.178  0.101  -0.289 C06 A1L8V 3  
A1L8V C08 C4 C 0 1 N N N N N N -3.183 16.954 -9.576  0.289  1.327  -0.196 C08 A1L8V 4  
A1L8V N01 N1 N 0 1 N N N N N N -5.479 19.902 -10.516 -2.879 -0.200 0.242  N01 A1L8V 5  
A1L8V N03 N2 N 0 1 N N N N N N -3.283 19.147 -11.556 -0.827 -1.228 -0.009 N03 A1L8V 6  
A1L8V N05 N3 N 0 1 N N N N N N -1.129 18.445 -12.617 1.163  -2.399 -0.252 N05 A1L8V 7  
A1L8V N07 N4 N 0 1 N N N N N N -0.971 16.174 -10.635 2.186  0.179  0.777  N07 A1L8V 8  
A1L8V N09 N5 N 0 1 N N N N N N -4.299 17.873 -9.569  -1.017 1.120  -0.023 N09 A1L8V 9  
A1L8V O10 O1 O 0 1 N N N N N N -3.171 16.086 -8.772  0.748  2.451  -0.272 O10 A1L8V 10 
A1L8V H1  H1 H 0 1 N N N N N N -1.523 17.755 -9.905  1.699  0.134  -1.245 H1  A1L8V 11 
A1L8V H2  H2 H 0 1 N N N N N N -5.525 20.656 -11.172 -3.424 0.600  0.298  H2  A1L8V 12 
A1L8V H3  H3 H 0 1 N N N N N N -6.204 19.785 -9.837  -3.292 -1.075 0.312  H3  A1L8V 13 
A1L8V H4  H4 H 0 1 N N N N N N -1.216 19.201 -13.266 0.695  -3.246 -0.180 H4  A1L8V 14 
A1L8V H5  H5 H 0 1 N N N N N N -0.341 17.832 -12.666 2.125  -2.386 -0.377 H5  A1L8V 15 
A1L8V H6  H6 H 0 1 N N N N N N -1.082 15.496 -9.908  2.681  1.058  0.743  H6  A1L8V 16 
A1L8V H7  H7 H 0 1 N N N N N N -0.953 15.712 -11.522 1.766  0.035  1.683  H7  A1L8V 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1L8V N05 C04 SING N N 1  
A1L8V C04 N03 DOUB N N 2  
A1L8V C04 C06 SING N N 3  
A1L8V N03 C02 SING N N 4  
A1L8V N07 C06 SING N N 5  
A1L8V C06 C08 SING N N 6  
A1L8V C02 N01 SING N N 7  
A1L8V C02 N09 DOUB N N 8  
A1L8V C08 N09 SING N N 9  
A1L8V C08 O10 DOUB N N 10 
A1L8V C06 H1  SING N N 11 
A1L8V N01 H2  SING N N 12 
A1L8V N01 H3  SING N N 13 
A1L8V N05 H4  SING N N 14 
A1L8V N05 H5  SING N N 15 
A1L8V N07 H6  SING N N 16 
A1L8V N07 H7  SING N N 17 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1L8V InChI            InChI                1.06  "InChI=1S/C4H7N5O/c5-1-2(6)8-4(7)9-3(1)10/h1H,5H2,(H4,6,7,8,9,10)/t1-/m0/s1" 
A1L8V InChIKey         InChI                1.06  PEAFISCOWLJTEQ-SFOWXEAESA-N                                                  
A1L8V SMILES_CANONICAL CACTVS               3.385 "N[C@H]1C(=NC(=NC1=O)N)N"                                                    
A1L8V SMILES           CACTVS               3.385 "N[CH]1C(=NC(=NC1=O)N)N"                                                     
A1L8V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1(C(=NC(=NC1=O)N)N)N"                                                      
A1L8V SMILES           "OpenEye OEToolkits" 2.0.7 "C1(C(=NC(=NC1=O)N)N)N"                                                      
# 
_pdbx_chem_comp_identifier.comp_id           A1L8V 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2,5,6-tris(azanyl)-5~{H}-pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1L8V "Create component" 2025-04-01 PDBJ 
A1L8V "Initial release"  2026-04-01 RCSB 
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