data_A1L9G # _chem_comp.id A1L9G _chem_comp.name ;P1-(5'-Adenosyl) P4-(5'-guanosyl) tetraphosphate ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N10 O20 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-01 _chem_comp.pdbx_modified_date 2025-10-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 852.386 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L9G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UPW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L9G C1E C1 C 0 1 N N R N N N 162.447 155.630 175.309 6.952 2.011 -0.478 C1E A1L9G 1 A1L9G C2A C2 C 0 1 Y N N N N N 159.710 154.858 171.944 9.102 4.912 2.189 C2A A1L9G 2 A1L9G C2E C3 C 0 1 N N R N N N 162.152 154.598 176.417 7.648 2.228 -1.840 C2E A1L9G 3 A1L9G C3E C4 C 0 1 N N S N N N 163.546 154.407 177.023 6.759 1.458 -2.842 C3E A1L9G 4 A1L9G C4A C5 C 0 1 Y N N N N N 161.692 154.796 173.082 8.517 2.867 1.318 C4A A1L9G 5 A1L9G C4E C6 C 0 1 N N R N N N 164.135 155.806 176.928 5.631 0.867 -1.967 C4E A1L9G 6 A1L9G C5A C7 C 0 1 Y N N N N N 162.248 154.125 172.033 9.406 2.244 2.211 C5A A1L9G 7 A1L9G C5E C8 C 0 1 N N N N N N 165.635 155.785 176.874 5.246 -0.527 -2.464 C5E A1L9G 8 A1L9G C5F C9 C 0 1 N N N N N N 172.354 152.759 168.858 -6.119 -2.103 0.640 C5F A1L9G 9 A1L9G C6A C10 C 0 1 Y N N N N N 161.443 153.829 170.893 10.127 3.056 3.103 C6A A1L9G 10 A1L9G C8A C11 C 0 1 Y N N N N N 163.780 154.382 173.560 8.481 0.682 1.026 C8A A1L9G 11 A1L9G N1A N1 N 0 1 Y N N N N N 160.158 154.210 170.876 9.946 4.372 3.050 N1A A1L9G 12 A1L9G N3A N2 N 0 1 Y N N N N N 160.397 155.162 173.024 8.399 4.190 1.342 N3A A1L9G 13 A1L9G N6A N3 N 0 1 N N N N N N 161.944 153.174 169.843 11.008 2.499 4.014 N6A A1L9G 14 A1L9G N7A N4 N 0 1 Y N N N N N 163.553 153.870 172.339 9.335 0.911 1.980 N7A A1L9G 15 A1L9G N9A N5 N 0 1 Y N N N N N 162.632 154.951 174.012 7.949 1.856 0.585 N9A A1L9G 16 A1L9G O1A O1 O 0 1 N N N N N N 168.418 153.525 177.415 2.797 -2.478 -3.445 O1A A1L9G 17 A1L9G O1B O2 O 0 1 N N N N N N 166.536 156.211 173.869 1.299 -4.951 -1.438 O1B A1L9G 18 A1L9G O1D O3 O 0 1 N N N N N N 169.354 154.950 168.865 -4.400 -4.677 0.204 O1D A1L9G 19 A1L9G O1G O4 O 0 1 N N N N N N 170.608 156.110 172.371 -1.452 -5.453 -0.169 O1G A1L9G 20 A1L9G O2A O5 O 0 1 N N N N N N 167.238 153.001 175.243 4.485 -3.500 -1.871 O2A A1L9G 21 A1L9G O2B O6 O 0 1 N N N N N N 168.820 157.203 174.186 2.518 -4.755 0.763 O2B A1L9G 22 A1L9G O2D O7 O 0 1 N N N N N N 171.635 155.328 169.883 -4.339 -4.002 2.636 O2D A1L9G 23 A1L9G O2E O8 O 0 1 N N N N N N 161.225 155.124 177.369 7.685 3.618 -2.169 O2E A1L9G 24 A1L9G O2G O9 O 0 1 N N N N N N 170.863 153.866 173.473 -0.841 -5.142 2.261 O2G A1L9G 25 A1L9G O3A O10 O 0 1 N N N N N N 168.035 155.353 175.704 2.307 -2.707 -0.872 O3A A1L9G 26 A1L9G O3B O11 O 0 1 N N N N N N 168.580 154.895 173.221 0.182 -3.610 0.385 O3B A1L9G 27 A1L9G O3E O12 O 0 1 N N N N N N 163.489 154.003 178.392 6.219 2.349 -3.820 O3E A1L9G 28 A1L9G O3G O13 O 0 1 N N N N N N 169.884 154.032 171.160 -2.367 -3.411 1.000 O3G A1L9G 29 A1L9G O4E O14 O 0 1 N N N N N N 163.610 156.326 175.695 6.195 0.792 -0.640 O4E A1L9G 30 A1L9G O5E O15 O 0 1 N N N N N N 166.093 154.444 176.975 4.126 -1.007 -1.717 O5E A1L9G 31 A1L9G O5F O16 O 0 1 N N N N N N 170.965 152.999 169.149 -4.698 -2.227 0.731 O5F A1L9G 32 A1L9G PA P1 P 0 1 N N N N N N 167.478 154.009 176.339 3.452 -2.446 -1.974 PA A1L9G 33 A1L9G PB P2 P 0 1 N N N N N N 167.975 155.954 174.236 1.571 -4.026 -0.315 PB A1L9G 34 A1L9G PD P3 P 0 1 N N N N N N 170.461 154.392 169.726 -3.961 -3.603 1.123 PD A1L9G 35 A1L9G PG P4 P 0 1 N N N N N N 170.020 154.737 172.574 -1.127 -4.426 0.847 PG A1L9G 36 A1L9G H1 H1 H 0 1 N N N N N N 161.594 156.321 175.240 6.286 2.845 -0.256 H1 A1L9G 37 A1L9G H2 H2 H 0 1 N N N N N N 158.675 155.167 171.925 8.981 5.985 2.183 H2 A1L9G 38 A1L9G H3 H3 H 0 1 N N N N N N 161.795 153.657 175.974 8.655 1.811 -1.825 H3 A1L9G 39 A1L9G H4 H4 H 0 1 N N N N N N 164.132 153.703 176.414 7.327 0.662 -3.324 H4 A1L9G 40 A1L9G H5 H5 H 0 1 N N N N N N 163.798 156.409 177.784 4.762 1.525 -1.973 H5 A1L9G 41 A1L9G H6 H6 H 0 1 N N N N N N 165.974 156.218 175.921 4.983 -0.476 -3.521 H6 A1L9G 42 A1L9G H7 H7 H 0 1 N N N N N N 166.040 156.375 177.709 6.088 -1.206 -2.332 H7 A1L9G 43 A1L9G H8 H8 H 0 1 N N N N N N 172.946 153.571 168.410 -6.496 -2.793 -0.115 H8 A1L9G 44 A1L9G H9 H9 H 0 1 N N N N N N 172.964 152.229 169.604 -6.567 -2.341 1.605 H9 A1L9G 45 A1L9G H11 H11 H 0 1 N N N N N N 164.718 154.347 174.093 8.230 -0.296 0.641 H11 A1L9G 46 A1L9G H12 H12 H 0 1 N N N N N N 161.232 153.058 169.151 11.133 1.538 4.042 H12 A1L9G 47 A1L9G H13 H13 H 0 1 N N N N N N 162.703 153.697 169.455 11.500 3.070 4.624 H13 A1L9G 48 A1L9G H14 H14 H 0 1 N N N N N N 168.706 152.643 177.211 2.110 -1.812 -3.584 H14 A1L9G 49 A1L9G H15 H15 H 0 1 N N N N N N 168.280 157.941 173.927 2.737 -4.206 1.529 H15 A1L9G 50 A1L9G H16 H16 H 0 1 N N N N N N 171.469 156.129 169.399 -4.079 -3.342 3.293 H16 A1L9G 51 A1L9G H17 H17 H 0 1 N N N N N N 161.058 154.474 178.041 8.111 3.811 -3.015 H17 A1L9G 52 A1L9G H18 H18 H 0 1 N N N N N N 171.630 154.350 173.756 -0.621 -4.528 2.975 H18 A1L9G 53 A1L9G H19 H19 H 0 1 N N N N N N 164.371 153.896 178.728 6.888 2.794 -4.359 H19 A1L9G 54 A1L9G C1 C12 C 0 1 N N N N N N ? ? ? -6.483 -0.670 0.249 C1 A1L9G 55 A1L9G C2 C13 C 0 1 N N N N N N ? ? ? -8.004 -0.557 0.026 C2 A1L9G 56 A1L9G C3 C14 C 0 1 N N N N N N ? ? ? -8.455 0.527 1.035 C3 A1L9G 57 A1L9G C4 C15 C 0 1 N N N N N N ? ? ? -7.130 1.280 1.316 C4 A1L9G 58 A1L9G O1 O17 O 0 1 N N N N N N ? ? ? -6.139 0.230 1.315 O1 A1L9G 59 A1L9G O2 O18 O 0 1 N N N N N N ? ? ? -8.284 -0.144 -1.312 O2 A1L9G 60 A1L9G O3 O19 O 0 1 N N N N N N ? ? ? -9.422 1.399 0.446 O3 A1L9G 61 A1L9G N1 N6 N 0 1 Y N N N N N ? ? ? -6.853 2.252 0.256 N1 A1L9G 62 A1L9G C5 C16 C 0 1 Y N N N N N ? ? ? -6.021 2.068 -0.810 C5 A1L9G 63 A1L9G N2 N7 N 0 1 Y N N N N N ? ? ? -6.013 3.137 -1.553 N2 A1L9G 64 A1L9G C7 C17 C 0 1 Y N N N N N ? ? ? -6.836 4.067 -1.010 C7 A1L9G 65 A1L9G C8 C18 C 0 1 Y N N N N N ? ? ? -7.387 3.508 0.149 C8 A1L9G 66 A1L9G N3 N8 N 0 1 N N N N N N ? ? ? -8.245 4.223 0.887 N3 A1L9G 67 A1L9G C9 C19 C 0 1 N N N N N N ? ? ? -7.211 5.382 -1.372 C9 A1L9G 68 A1L9G N4 N9 N 0 1 N N N N N N ? ? ? -8.082 6.043 -0.576 N4 A1L9G 69 A1L9G C11 C20 C 0 1 N N N N N N ? ? ? -8.582 5.445 0.542 C11 A1L9G 70 A1L9G H10 H10 H 0 1 N N N N N N ? ? ? -5.953 -0.389 -0.662 H10 A1L9G 71 A1L9G H20 H20 H 0 1 N N N N N N ? ? ? -8.492 -1.507 0.244 H20 A1L9G 72 A1L9G H21 H21 H 0 1 N N N N N N ? ? ? -8.846 0.073 1.945 H21 A1L9G 73 A1L9G H22 H22 H 0 1 N N N N N N ? ? ? -7.168 1.772 2.289 H22 A1L9G 74 A1L9G H23 H23 H 0 1 N N N N N N ? ? ? -9.227 -0.056 -1.508 H23 A1L9G 75 A1L9G H24 H24 H 0 1 N N N N N N ? ? ? -10.236 0.955 0.169 H24 A1L9G 76 A1L9G H25 H25 H 0 1 N N N N N N ? ? ? -5.454 1.171 -1.008 H25 A1L9G 77 A1L9G O4 O20 O 0 1 N N N N N N ? ? ? -6.760 5.906 -2.375 O4 A1L9G 78 A1L9G N5 N10 N 0 1 N N N N N N ? ? ? -9.466 6.140 1.329 N5 A1L9G 79 A1L9G H29 H29 H 0 1 N N N N N N ? ? ? -8.354 6.945 -0.804 H29 A1L9G 80 A1L9G H26 H26 H 0 1 N N N N N N ? ? ? -9.832 5.727 2.127 H26 A1L9G 81 A1L9G H27 H27 H 0 1 N N N N N N ? ? ? -9.724 7.043 1.088 H27 A1L9G 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L9G C5F O5F SING N N 1 A1L9G O1D PD DOUB N N 2 A1L9G O5F PD SING N N 3 A1L9G PD O2D SING N N 4 A1L9G PD O3G SING N N 5 A1L9G N6A C6A SING N N 6 A1L9G N1A C6A DOUB Y N 7 A1L9G N1A C2A SING Y N 8 A1L9G C6A C5A SING Y N 9 A1L9G O3G PG SING N N 10 A1L9G C2A N3A DOUB Y N 11 A1L9G C5A N7A SING Y N 12 A1L9G C5A C4A DOUB Y N 13 A1L9G N7A C8A DOUB Y N 14 A1L9G O1G PG DOUB N N 15 A1L9G PG O3B SING N N 16 A1L9G PG O2G SING N N 17 A1L9G N3A C4A SING Y N 18 A1L9G C4A N9A SING Y N 19 A1L9G O3B PB SING N N 20 A1L9G C8A N9A SING Y N 21 A1L9G O1B PB DOUB N N 22 A1L9G N9A C1E SING N N 23 A1L9G O2B PB SING N N 24 A1L9G PB O3A SING N N 25 A1L9G O2A PA DOUB N N 26 A1L9G C1E O4E SING N N 27 A1L9G C1E C2E SING N N 28 A1L9G O4E C4E SING N N 29 A1L9G O3A PA SING N N 30 A1L9G PA O5E SING N N 31 A1L9G PA O1A SING N N 32 A1L9G C2E C3E SING N N 33 A1L9G C2E O2E SING N N 34 A1L9G C5E C4E SING N N 35 A1L9G C5E O5E SING N N 36 A1L9G C4E C3E SING N N 37 A1L9G C3E O3E SING N N 38 A1L9G C1E H1 SING N N 39 A1L9G C2A H2 SING N N 40 A1L9G C2E H3 SING N N 41 A1L9G C3E H4 SING N N 42 A1L9G C4E H5 SING N N 43 A1L9G C5E H6 SING N N 44 A1L9G C5E H7 SING N N 45 A1L9G C5F H8 SING N N 46 A1L9G C5F H9 SING N N 47 A1L9G C8A H11 SING N N 48 A1L9G N6A H12 SING N N 49 A1L9G N6A H13 SING N N 50 A1L9G O1A H14 SING N N 51 A1L9G O2B H15 SING N N 52 A1L9G O2D H16 SING N N 53 A1L9G O2E H17 SING N N 54 A1L9G O2G H18 SING N N 55 A1L9G O3E H19 SING N N 56 A1L9G C5F C1 SING N N 57 A1L9G C1 C2 SING N N 58 A1L9G C2 C3 SING N N 59 A1L9G C3 C4 SING N N 60 A1L9G C4 O1 SING N N 61 A1L9G O1 C1 SING N N 62 A1L9G C2 O2 SING N N 63 A1L9G C3 O3 SING N N 64 A1L9G C4 N1 SING N N 65 A1L9G N1 C5 SING Y N 66 A1L9G C5 N2 DOUB Y N 67 A1L9G N2 C7 SING Y N 68 A1L9G C7 C8 DOUB Y N 69 A1L9G C8 N1 SING Y N 70 A1L9G C8 N3 SING N N 71 A1L9G C7 C9 SING N N 72 A1L9G C9 N4 SING N N 73 A1L9G N3 C11 DOUB N N 74 A1L9G N4 C11 SING N N 75 A1L9G C1 H10 SING N N 76 A1L9G C2 H20 SING N N 77 A1L9G C3 H21 SING N N 78 A1L9G C4 H22 SING N N 79 A1L9G O2 H23 SING N N 80 A1L9G O3 H24 SING N N 81 A1L9G C5 H25 SING N N 82 A1L9G C9 O4 DOUB N N 83 A1L9G C11 N5 SING N N 84 A1L9G N4 H29 SING N N 85 A1L9G N5 H26 SING N N 86 A1L9G N5 H27 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L9G InChI InChI 1.06 "InChI=1S/C20H28N10O20P4/c21-14-8-15(24-3-23-14)29(4-25-8)18-12(33)10(31)6(46-18)1-44-51(36,37)48-53(40,41)50-54(42,43)49-52(38,39)45-2-7-11(32)13(34)19(47-7)30-5-26-9-16(30)27-20(22)28-17(9)35/h3-7,10-13,18-19,31-34H,1-2H2,(H,36,37)(H,38,39)(H,40,41)(H,42,43)(H2,21,23,24)(H3,22,27,28,35)/t6-,7?,10-,11?,12-,13?,18-,19?/m1/s1" A1L9G InChIKey InChI 1.06 SJXJAXXRDJWRCR-ZAABGZRTSA-N A1L9G SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)C3OC(CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(O)C3O" A1L9G SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)C3OC(CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(O)C3O" A1L9G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N" A1L9G SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1L9G _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L9G "Create component" 2025-05-01 PDBJ A1L9G "Initial release" 2025-10-22 RCSB #