data_A1L9J # _chem_comp.id A1L9J _chem_comp.name "~{N}-[5-[2-fluoranyl-5-[4-[[4-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-2,1,3-benzoxadiazol-7-yl]amino]butylcarbamoyl]phenyl]-2-[(3~{R},5~{S})-3,4,5-trimethylpiperazin-1-yl]phenyl]-6-oxidanylidene-4-(trifluoromethyl)-1~{H}-pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H38 F4 N9 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2025-05-02 _chem_comp.pdbx_modified_date 2026-04-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 780.748 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L9J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UOJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L9J C01 C1 C 0 1 N N N N N N 11.150 18.114 16.611 -8.707 5.905 -0.567 C01 A1L9J 1 A1L9J C03 C2 C 0 1 N N S N N N 11.132 18.450 18.773 -8.552 3.925 0.825 C03 A1L9J 2 A1L9J C04 C3 C 0 1 N N N N N N 12.082 18.541 20.015 -7.108 3.531 1.121 C04 A1L9J 3 A1L9J C05 C4 C 0 1 N N R N N N 13.069 17.890 17.666 -7.995 3.833 -1.607 C05 A1L9J 4 A1L9J C06 C5 C 0 1 N N N N N N 13.812 17.386 18.952 -6.571 3.447 -1.216 C06 A1L9J 5 A1L9J C08 C6 C 0 1 Y N N N N N 13.707 17.448 21.481 -5.327 2.184 0.347 C08 A1L9J 6 A1L9J C09 C7 C 0 1 Y N N N N N 12.965 17.209 22.818 -5.114 0.806 0.419 C09 A1L9J 7 A1L9J C11 C8 C 0 1 N N N N N N 10.586 17.973 23.184 -5.922 -1.362 -0.145 C11 A1L9J 8 A1L9J C12 C9 C 0 1 N N N N N N 9.144 17.494 23.454 -7.037 -2.288 -0.413 C12 A1L9J 9 A1L9J C13 C10 C 0 1 N N N N N N 8.161 17.248 22.315 -8.331 -1.814 -0.492 C13 A1L9J 10 A1L9J C15 C11 C 0 1 N N N N N N 6.405 16.484 24.065 -9.140 -3.973 -0.909 C15 A1L9J 11 A1L9J C16 C12 C 0 1 N N N N N N 7.388 16.711 25.194 -7.837 -4.501 -0.843 C16 A1L9J 12 A1L9J C17 C13 C 0 1 N N N N N N 8.749 17.201 24.886 -6.789 -3.670 -0.597 C17 A1L9J 13 A1L9J C19 C14 C 0 1 Y N N N N N 13.718 17.328 24.162 -3.855 0.316 0.719 C19 A1L9J 14 A1L9J C20 C15 C 0 1 Y N N N N N 15.194 17.676 24.184 -2.803 1.201 0.949 C20 A1L9J 15 A1L9J C21 C16 C 0 1 Y N N N N N 15.894 17.789 25.603 -1.452 0.679 1.271 C21 A1L9J 16 A1L9J C22 C17 C 0 1 Y N N N N N 17.437 17.821 25.675 -1.292 -0.280 2.275 C22 A1L9J 17 A1L9J C23 C18 C 0 1 Y N N N N N 18.161 17.958 27.037 -0.032 -0.768 2.576 C23 A1L9J 18 A1L9J C24 C19 C 0 1 Y N N N N N 17.332 18.064 28.339 1.072 -0.311 1.888 C24 A1L9J 19 A1L9J C25 C20 C 0 1 Y N N N N N 15.776 18.034 28.271 0.925 0.649 0.883 C25 A1L9J 20 A1L9J C26 C21 C 0 1 Y N N N N N 15.049 17.909 26.906 -0.342 1.140 0.571 C26 A1L9J 21 A1L9J C27 C22 C 0 1 Y N N N N N 15.941 17.928 22.850 -3.020 2.575 0.876 C27 A1L9J 22 A1L9J C28 C23 C 0 1 Y N N N N N 15.194 17.822 21.484 -4.277 3.061 0.576 C28 A1L9J 23 A1L9J C29 C24 C 0 1 N N N N N N 9.859 17.699 19.293 -9.477 2.735 1.097 C29 A1L9J 24 A1L9J C30 C25 C 0 1 N N N N N N 13.617 17.083 16.458 -8.727 2.608 -2.164 C30 A1L9J 25 A1L9J C32 C26 C 0 1 N N N N N N 14.947 18.143 29.594 2.109 1.138 0.147 C32 A1L9J 26 A1L9J C36 C27 C 0 1 N N N N N N 16.303 16.219 30.817 4.508 1.143 -0.284 C36 A1L9J 27 A1L9J C37 C28 C 0 1 N N N N N N 15.750 14.907 31.488 5.761 0.444 0.245 C37 A1L9J 28 A1L9J C38 C29 C 0 1 N N N N N N 15.264 13.929 30.369 6.988 0.951 -0.516 C38 A1L9J 29 A1L9J C39 C30 C 0 1 N N N N N N 14.002 14.508 29.673 8.241 0.251 0.013 C39 A1L9J 30 A1L9J C41 C31 C 0 1 Y N N N N N 12.951 14.027 27.409 10.662 0.249 -0.413 C41 A1L9J 31 A1L9J C42 C32 C 0 1 Y N N N N N 12.774 14.702 26.068 10.814 -0.710 0.582 C42 A1L9J 32 A1L9J C43 C33 C 0 1 Y N N N N N 11.598 14.402 25.217 12.038 -1.235 0.922 C43 A1L9J 33 A1L9J C44 C34 C 0 1 Y N N N N N 10.544 13.411 25.675 13.227 -0.838 0.284 C44 A1L9J 34 A1L9J C45 C35 C 0 1 Y N N N N N 10.734 12.708 27.084 13.163 0.170 -0.780 C45 A1L9J 35 A1L9J C46 C36 C 0 1 Y N N N N N 11.849 12.990 27.892 11.836 0.729 -1.138 C46 A1L9J 36 A1L9J C50 C37 C 0 1 N N N N N N 9.669 17.400 26.110 -5.384 -4.211 -0.522 C50 A1L9J 37 A1L9J F35 F1 F 0 1 N N N N N N 18.155 17.731 24.506 -2.370 -0.732 2.953 F35 A1L9J 38 A1L9J F51 F2 F 0 1 N N N N N N 10.998 17.216 25.820 -4.596 -3.600 -1.503 F51 A1L9J 39 A1L9J F52 F3 F 0 1 N N N N N N 9.295 16.486 27.067 -4.848 -3.942 0.742 F52 A1L9J 40 A1L9J F53 F4 F 0 1 N N N N N N 9.481 18.656 26.617 -5.405 -5.593 -0.735 F53 A1L9J 41 A1L9J N02 N1 N 0 1 N N N N N N 11.687 17.757 17.718 -8.734 4.438 -0.517 N02 A1L9J 42 A1L9J N07 N2 N 0 1 N N N N N N 12.988 17.394 20.167 -6.597 2.680 0.037 N07 A1L9J 43 A1L9J N10 N3 N 0 1 N N N N N N 11.560 16.882 22.998 -6.175 -0.080 0.187 N10 A1L9J 44 A1L9J N14 N4 N 0 1 N N N N N N 6.788 16.753 22.633 -9.352 -2.656 -0.737 N14 A1L9J 45 A1L9J N33 N5 N 0 1 N N N N N N 15.233 17.264 30.781 3.333 0.658 0.445 N33 A1L9J 46 A1L9J N40 N6 N 0 1 N N N N N N 14.117 14.332 28.229 9.416 0.736 -0.716 N40 A1L9J 47 A1L9J N47 N7 N 0 1 Y N N N N N 9.967 11.806 27.731 13.969 0.794 -1.592 N47 A1L9J 48 A1L9J N49 N8 N 0 1 Y N N N N N 11.742 12.251 29.012 12.124 1.570 -2.093 N49 A1L9J 49 A1L9J N54 N9 N 1 1 N N N N N N 9.387 13.125 24.840 14.391 -1.367 0.640 N54 A1L9J 50 A1L9J O18 O1 O 0 1 N N N N N N 10.914 19.117 23.153 -4.773 -1.754 -0.224 O18 A1L9J 51 A1L9J O31 O2 O 0 1 N N N N N N 5.333 16.086 24.360 -10.083 -4.714 -1.129 O31 A1L9J 52 A1L9J O34 O3 O 0 1 N N N N N N 14.077 18.952 29.645 1.980 1.972 -0.727 O34 A1L9J 53 A1L9J O48 O4 O 0 1 Y N N N N N 10.578 11.510 28.931 13.324 1.554 -2.287 O48 A1L9J 54 A1L9J O55 O5 O 0 1 N N N N N N 8.406 12.679 25.313 14.442 -2.339 1.669 O55 A1L9J 55 A1L9J O56 O6 O 0 1 N N N N N N 9.411 13.382 23.466 15.416 -1.017 0.082 O56 A1L9J 56 A1L9J H1 H1 H 0 1 N N N N N N 10.058 17.999 16.679 -9.149 6.246 -1.503 H1 A1L9J 57 A1L9J H2 H2 H 0 1 N N N N N N 11.396 19.167 16.407 -9.275 6.307 0.272 H2 A1L9J 58 A1L9J H3 H3 H 0 1 N N N N N N 11.535 17.483 15.796 -7.675 6.251 -0.506 H3 A1L9J 59 A1L9J H4 H4 H 0 1 N N N N N N 10.843 19.469 18.475 -8.830 4.722 1.542 H4 A1L9J 60 A1L9J H5 H5 H 0 1 N N N N N N 12.692 19.451 19.917 -6.490 4.426 1.200 H5 A1L9J 61 A1L9J H6 H6 H 0 1 N N N N N N 11.461 18.612 20.920 -7.063 2.981 2.063 H6 A1L9J 62 A1L9J H7 H7 H 0 1 N N N N N N 13.340 18.946 17.517 -7.924 4.570 -2.430 H7 A1L9J 63 A1L9J H8 H8 H 0 1 N N N N N N 14.151 16.355 18.772 -6.128 2.836 -2.004 H8 A1L9J 64 A1L9J H9 H9 H 0 1 N N N N N N 14.684 18.034 19.123 -5.970 4.346 -1.078 H9 A1L9J 65 A1L9J H11 H11 H 0 1 N N N N N N 8.454 17.429 21.291 -8.525 -0.760 -0.357 H11 A1L9J 66 A1L9J H12 H12 H 0 1 N N N N N N 7.098 16.517 26.216 -7.670 -5.558 -0.986 H12 A1L9J 67 A1L9J H13 H13 H 0 1 N N N N N N 13.191 17.163 25.090 -3.688 -0.749 0.776 H13 A1L9J 68 A1L9J H14 H14 H 0 1 N N N N N N 19.240 17.979 27.078 0.087 -1.509 3.352 H14 A1L9J 69 A1L9J H15 H15 H 0 1 N N N N N N 17.831 18.159 29.292 2.053 -0.695 2.127 H15 A1L9J 70 A1L9J H16 H16 H 0 1 N N N N N N 13.970 17.905 26.860 -0.461 1.878 -0.208 H16 A1L9J 71 A1L9J H17 H17 H 0 1 N N N N N N 16.991 18.180 22.866 -2.205 3.260 1.054 H17 A1L9J 72 A1L9J H18 H18 H 0 1 N N N N N N 15.715 18.009 20.557 -4.443 4.127 0.520 H18 A1L9J 73 A1L9J H19 H19 H 0 1 N N N N N N 9.422 18.257 20.134 -9.390 2.439 2.143 H19 A1L9J 74 A1L9J H20 H20 H 0 1 N N N N N N 9.121 17.622 18.481 -10.508 3.020 0.885 H20 A1L9J 75 A1L9J H21 H21 H 0 1 N N N N N N 10.140 16.690 19.629 -9.192 1.900 0.458 H21 A1L9J 76 A1L9J H22 H22 H 0 1 N N N N N N 14.711 17.186 16.414 -9.707 2.908 -2.535 H22 A1L9J 77 A1L9J H23 H23 H 0 1 N N N N N N 13.353 16.022 16.576 -8.146 2.178 -2.980 H23 A1L9J 78 A1L9J H24 H24 H 0 1 N N N N N N 13.174 17.469 15.528 -8.848 1.867 -1.374 H24 A1L9J 79 A1L9J H25 H25 H 0 1 N N N N N N 16.628 15.994 29.790 4.605 2.220 -0.142 H25 A1L9J 80 A1L9J H26 H26 H 0 1 N N N N N N 17.158 16.593 31.399 4.391 0.926 -1.346 H26 A1L9J 81 A1L9J H27 H27 H 0 1 N N N N N N 14.908 15.158 32.150 5.878 0.662 1.307 H27 A1L9J 82 A1L9J H28 H28 H 0 1 N N N N N N 16.548 14.429 32.075 5.664 -0.632 0.104 H28 A1L9J 83 A1L9J H29 H29 H 0 1 N N N N N N 15.019 12.955 30.817 6.871 0.733 -1.578 H29 A1L9J 84 A1L9J H30 H30 H 0 1 N N N N N N 16.064 13.799 29.625 7.085 2.027 -0.375 H30 A1L9J 85 A1L9J H31 H31 H 0 1 N N N N N N 13.914 15.580 29.906 8.358 0.469 1.075 H31 A1L9J 86 A1L9J H32 H32 H 0 1 N N N N N N 13.108 13.980 30.036 8.145 -0.825 -0.129 H32 A1L9J 87 A1L9J H33 H33 H 0 1 N N N N N N 13.513 15.411 25.726 9.936 -1.055 1.109 H33 A1L9J 88 A1L9J H34 H34 H 0 1 N N N N N N 11.490 14.894 24.261 12.088 -1.977 1.705 H34 A1L9J 89 A1L9J H36 H36 H 0 1 N N N N N N 11.258 15.929 22.996 -7.091 0.228 0.266 H36 A1L9J 90 A1L9J H37 H37 H 0 1 N N N N N N 14.671 17.386 31.599 3.437 -0.007 1.143 H37 A1L9J 91 A1L9J H38 H38 H 0 1 N N N N N N 14.767 13.586 28.086 9.313 1.402 -1.414 H38 A1L9J 92 A1L9J H10 H10 H 0 1 N N N N N N 6.126 16.601 21.899 -10.256 -2.307 -0.789 H10 A1L9J 93 A1L9J H35 H35 H 0 1 N N N N N N 7.752 12.561 24.634 15.332 -2.665 1.857 H35 A1L9J 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L9J C30 C05 SING N N 1 A1L9J C01 N02 SING N N 2 A1L9J C05 N02 SING N N 3 A1L9J C05 C06 SING N N 4 A1L9J N02 C03 SING N N 5 A1L9J C03 C29 SING N N 6 A1L9J C03 C04 SING N N 7 A1L9J C06 N07 SING N N 8 A1L9J C04 N07 SING N N 9 A1L9J N07 C08 SING N N 10 A1L9J C08 C28 DOUB Y N 11 A1L9J C08 C09 SING Y N 12 A1L9J C28 C27 SING Y N 13 A1L9J C13 N14 SING N N 14 A1L9J C13 C12 DOUB N N 15 A1L9J N14 C15 SING N N 16 A1L9J C09 N10 SING N N 17 A1L9J C09 C19 DOUB Y N 18 A1L9J C27 C20 DOUB Y N 19 A1L9J N10 C11 SING N N 20 A1L9J O18 C11 DOUB N N 21 A1L9J C11 C12 SING N N 22 A1L9J C12 C17 SING N N 23 A1L9J O56 N54 DOUB N N 24 A1L9J C15 O31 DOUB N N 25 A1L9J C15 C16 SING N N 26 A1L9J C19 C20 SING Y N 27 A1L9J C20 C21 SING N N 28 A1L9J F35 C22 SING N N 29 A1L9J N54 O55 SING N N 30 A1L9J N54 C44 SING N N 31 A1L9J C17 C16 DOUB N N 32 A1L9J C17 C50 SING N N 33 A1L9J C43 C44 DOUB Y N 34 A1L9J C43 C42 SING Y N 35 A1L9J C21 C22 DOUB Y N 36 A1L9J C21 C26 SING Y N 37 A1L9J C22 C23 SING Y N 38 A1L9J C44 C45 SING Y N 39 A1L9J F51 C50 SING N N 40 A1L9J C42 C41 DOUB Y N 41 A1L9J C50 F53 SING N N 42 A1L9J C50 F52 SING N N 43 A1L9J C26 C25 DOUB Y N 44 A1L9J C23 C24 DOUB Y N 45 A1L9J C45 N47 DOUB Y N 46 A1L9J C45 C46 SING Y N 47 A1L9J C41 C46 SING Y N 48 A1L9J C41 N40 SING N N 49 A1L9J N47 O48 SING Y N 50 A1L9J C46 N49 DOUB Y N 51 A1L9J N40 C39 SING N N 52 A1L9J C25 C24 SING Y N 53 A1L9J C25 C32 SING N N 54 A1L9J O48 N49 SING Y N 55 A1L9J C32 O34 DOUB N N 56 A1L9J C32 N33 SING N N 57 A1L9J C39 C38 SING N N 58 A1L9J C38 C37 SING N N 59 A1L9J N33 C36 SING N N 60 A1L9J C36 C37 SING N N 61 A1L9J C01 H1 SING N N 62 A1L9J C01 H2 SING N N 63 A1L9J C01 H3 SING N N 64 A1L9J C03 H4 SING N N 65 A1L9J C04 H5 SING N N 66 A1L9J C04 H6 SING N N 67 A1L9J C05 H7 SING N N 68 A1L9J C06 H8 SING N N 69 A1L9J C06 H9 SING N N 70 A1L9J C13 H11 SING N N 71 A1L9J C16 H12 SING N N 72 A1L9J C19 H13 SING N N 73 A1L9J C23 H14 SING N N 74 A1L9J C24 H15 SING N N 75 A1L9J C26 H16 SING N N 76 A1L9J C27 H17 SING N N 77 A1L9J C28 H18 SING N N 78 A1L9J C29 H19 SING N N 79 A1L9J C29 H20 SING N N 80 A1L9J C29 H21 SING N N 81 A1L9J C30 H22 SING N N 82 A1L9J C30 H23 SING N N 83 A1L9J C30 H24 SING N N 84 A1L9J C36 H25 SING N N 85 A1L9J C36 H26 SING N N 86 A1L9J C37 H27 SING N N 87 A1L9J C37 H28 SING N N 88 A1L9J C38 H29 SING N N 89 A1L9J C38 H30 SING N N 90 A1L9J C39 H31 SING N N 91 A1L9J C39 H32 SING N N 92 A1L9J C42 H33 SING N N 93 A1L9J C43 H34 SING N N 94 A1L9J N10 H36 SING N N 95 A1L9J N33 H37 SING N N 96 A1L9J N40 H38 SING N N 97 A1L9J N14 H10 SING N N 98 A1L9J O55 H35 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L9J InChI InChI 1.06 "InChI=1S/C37H37F4N9O6/c1-20-18-49(19-21(2)48(20)3)30-10-7-22(15-29(30)45-36(53)25-17-44-32(51)16-26(25)37(39,40)41)24-14-23(6-8-27(24)38)35(52)43-13-5-4-12-42-28-9-11-31(50(54)55)34-33(28)46-56-47-34/h6-11,14-17,20-21H,4-5,12-13,18-19H2,1-3H3,(H4-,42,43,44,45,47,51,52,53,54,55)/p+1/t20-,21+" A1L9J InChIKey InChI 1.06 QKPUCQOMYSNGLK-OYRHEFFESA-O A1L9J SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(C[C@@H](C)N1C)c2ccc(cc2NC(=O)C3=CNC(=O)C=C3C(F)(F)F)c4cc(ccc4F)C(=O)NCCCCNc5ccc(c6nonc56)[N+](O)=O" A1L9J SMILES CACTVS 3.385 "C[CH]1CN(C[CH](C)N1C)c2ccc(cc2NC(=O)C3=CNC(=O)C=C3C(F)(F)F)c4cc(ccc4F)C(=O)NCCCCNc5ccc(c6nonc56)[N+](O)=O" A1L9J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1CN(C[C@@H](N1C)C)c2ccc(cc2NC(=O)C3=CNC(=O)C=C3C(F)(F)F)c4cc(ccc4F)C(=O)NCCCCNc5ccc(c6c5non6)[N+](=O)O" A1L9J SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CC(N1C)C)c2ccc(cc2NC(=O)C3=CNC(=O)C=C3C(F)(F)F)c4cc(ccc4F)C(=O)NCCCCNc5ccc(c6c5non6)[N+](=O)O" # _pdbx_chem_comp_identifier.comp_id A1L9J _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[7-[4-[[4-fluoranyl-3-[3-[[6-oxidanylidene-4-(trifluoromethyl)-1~{H}-pyridin-3-yl]carbonylamino]-4-[(3~{R},5~{S})-3,4,5-trimethylpiperazin-1-yl]phenyl]phenyl]carbonylamino]butylamino]-2,1,3-benzoxadiazol-4-yl]-oxidanyl-oxidanylidene-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L9J "Create component" 2025-05-02 PDBJ A1L9J "Initial release" 2026-04-29 RCSB #