data_A1L9K # _chem_comp.id A1L9K _chem_comp.name "2-hexylsulfanyl-4-oxidanyl-1~{H}-pyrimidin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-02 _chem_comp.pdbx_modified_date 2026-09-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 228.311 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L9K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UPY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L9K C10 C1 C 0 1 N N N N N N 155.976 156.681 182.855 0.990 -0.176 -0.003 C10 A1L9K 1 A1L9K C11 C2 C 0 1 N N N N N N 159.777 160.455 182.233 7.285 0.235 0.006 C11 A1L9K 2 A1L9K C14 C3 C 0 1 N N N N N N 155.647 153.495 186.054 -2.736 1.535 -0.003 C14 A1L9K 3 A1L9K C15 C4 C 0 1 N N N N N N 154.719 152.510 186.051 -3.987 0.941 0.005 C15 A1L9K 4 A1L9K C13 C5 C 0 1 N N N N N N 153.966 152.295 184.949 -4.070 -0.456 0.007 C13 A1L9K 5 A1L9K C12 C6 C 0 1 N N N N N N 155.060 154.031 183.881 -1.722 -0.543 -0.007 C12 A1L9K 6 A1L9K S01 S1 S 0 1 N N N N N N 155.287 155.062 182.404 -0.244 -1.501 -0.008 S01 A1L9K 7 A1L9K O02 O1 O 0 1 N N N N N N 156.425 153.712 187.198 -2.625 2.884 -0.005 O02 A1L9K 8 A1L9K O03 O2 O 0 1 N N N N N N 153.155 151.432 184.948 -5.155 -1.014 0.014 O03 A1L9K 9 A1L9K N04 N1 N 0 1 N N N N N N 154.134 153.046 183.877 -2.928 -1.176 0.001 N04 A1L9K 10 A1L9K N05 N2 N 0 1 N N N N N N 155.815 154.247 184.982 -1.639 0.772 -0.004 N05 A1L9K 11 A1L9K C06 C7 C 0 1 N N N N N N 158.057 158.079 182.824 3.435 0.334 0.001 C06 A1L9K 12 A1L9K C07 C8 C 0 1 N N N N N N 158.060 158.797 181.473 4.839 -0.275 0.002 C07 A1L9K 13 A1L9K C08 C9 C 0 1 N N N N N N 157.495 156.661 182.700 2.393 -0.786 -0.003 C08 A1L9K 14 A1L9K C09 C10 C 0 1 N N N N N N 159.443 159.385 181.196 5.881 0.844 0.006 C09 A1L9K 15 A1L9K H102 H1 H 0 0 N N N N N N 155.552 157.454 182.197 0.862 0.442 -0.892 H102 A1L9K 16 A1L9K H101 H2 H 0 0 N N N N N N 155.719 156.908 183.900 0.860 0.438 0.888 H101 A1L9K 17 A1L9K H113 H3 H 0 0 N N N N N N 160.774 160.871 182.024 7.414 -0.379 -0.885 H113 A1L9K 18 A1L9K H112 H4 H 0 0 N N N N N N 159.027 161.259 182.185 8.027 1.033 0.009 H112 A1L9K 19 A1L9K H111 H5 H 0 0 N N N N N N 159.770 160.007 183.237 7.412 -0.384 0.895 H111 A1L9K 20 A1L9K H151 H6 H 0 0 N N N N N N 154.580 151.896 186.929 -4.883 1.545 0.010 H151 A1L9K 21 A1L9K H021 H9 H 0 0 N N N N N N 157.024 154.433 187.042 -1.712 3.203 -0.011 H021 A1L9K 22 A1L9K H041 H10 H 0 0 N N N N N N 153.577 152.887 183.062 -2.966 -2.145 -0.002 H041 A1L9K 23 A1L9K H062 H11 H 0 0 N N N N N N 159.088 158.024 183.202 3.306 0.948 0.893 H062 A1L9K 24 A1L9K H061 H12 H 0 0 N N N N N N 157.437 158.649 183.531 3.308 0.952 -0.887 H061 A1L9K 25 A1L9K H072 H13 H 0 0 N N N N N N 157.316 159.607 181.490 4.966 -0.894 0.890 H072 A1L9K 26 A1L9K H071 H14 H 0 0 N N N N N N 157.803 158.080 180.679 4.968 -0.889 -0.890 H071 A1L9K 27 A1L9K H082 H15 H 0 0 N N N N N N 157.754 156.252 181.712 2.520 -1.404 0.886 H082 A1L9K 28 A1L9K H081 H16 H 0 0 N N N N N N 157.932 156.027 183.485 2.523 -1.400 -0.894 H081 A1L9K 29 A1L9K H092 H17 H 0 0 N N N N N N 160.195 158.584 181.245 5.752 1.458 0.897 H092 A1L9K 30 A1L9K H091 H18 H 0 0 N N N N N N 159.452 159.836 180.193 5.754 1.462 -0.883 H091 A1L9K 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L9K C09 C07 SING N N 1 A1L9K C09 C11 SING N N 2 A1L9K C07 C06 SING N N 3 A1L9K S01 C10 SING N N 4 A1L9K S01 C12 SING N N 5 A1L9K C08 C06 SING N N 6 A1L9K C08 C10 SING N N 7 A1L9K N04 C12 SING N N 8 A1L9K N04 C13 SING N N 9 A1L9K C12 N05 DOUB N N 10 A1L9K O03 C13 DOUB N N 11 A1L9K C13 C15 SING N N 12 A1L9K N05 C14 SING N N 13 A1L9K C15 C14 DOUB N N 14 A1L9K C14 O02 SING N N 15 A1L9K C10 H102 SING N N 16 A1L9K C10 H101 SING N N 17 A1L9K C11 H113 SING N N 18 A1L9K C11 H112 SING N N 19 A1L9K C11 H111 SING N N 20 A1L9K C15 H151 SING N N 21 A1L9K O02 H021 SING N N 22 A1L9K N04 H041 SING N N 23 A1L9K C06 H062 SING N N 24 A1L9K C06 H061 SING N N 25 A1L9K C07 H072 SING N N 26 A1L9K C07 H071 SING N N 27 A1L9K C08 H082 SING N N 28 A1L9K C08 H081 SING N N 29 A1L9K C09 H092 SING N N 30 A1L9K C09 H091 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L9K InChI InChI 1.06 "InChI=1S/C10H16N2O2S/c1-2-3-4-5-6-15-10-11-8(13)7-9(14)12-10/h7H,2-6H2,1H3,(H2,11,12,13,14)" A1L9K InChIKey InChI 1.06 UYXOAKRMLQKLQX-UHFFFAOYSA-N A1L9K SMILES_CANONICAL CACTVS 3.385 "CCCCCCSC1=NC(=CC(=O)N1)O" A1L9K SMILES CACTVS 3.385 "CCCCCCSC1=NC(=CC(=O)N1)O" A1L9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCSC1=NC(=CC(=O)N1)O" A1L9K SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCSC1=NC(=CC(=O)N1)O" # _pdbx_chem_comp_identifier.comp_id A1L9K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-hexylsulfanyl-4-oxidanyl-1~{H}-pyrimidin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L9K "Create component" 2025-05-02 PDBJ A1L9K "Initial release" 2026-09-23 RCSB #