data_A1L9M # _chem_comp.id A1L9M _chem_comp.name "Acylated Cefovecin" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N5 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{R},5~{R})-2-[(1~{S})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-(4-oxidanylbutyl)-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2025-05-08 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.524 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1L9M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9UJ8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1L9M N1 N1 N 0 1 N N N N N N -3.791 -8.205 25.636 5.156 -0.138 0.421 N1 A1L9M 1 A1L9M N3 N2 N 0 1 N N N N N N -1.119 -12.846 23.976 0.117 -3.294 0.115 N3 A1L9M 2 A1L9M C4 C1 C 0 1 Y N N N N N -3.240 -10.880 26.381 3.920 -2.649 -0.152 C4 A1L9M 3 A1L9M C5 C2 C 0 1 Y N N N N N -1.955 -12.116 24.684 1.449 -2.918 0.053 C5 A1L9M 4 A1L9M C6 C3 C 0 1 N N N N N N -4.961 -9.241 23.509 3.024 0.990 0.507 C6 A1L9M 5 A1L9M C7 C4 C 0 1 N N S N N N -5.539 -6.949 22.463 0.882 2.142 0.354 C7 A1L9M 6 A1L9M C8 C5 C 0 1 N N R N N N -7.002 -6.482 22.493 -0.558 1.786 0.731 C8 A1L9M 7 A1L9M C10 C6 C 0 1 N N N N N N -7.621 -4.179 23.125 -2.249 0.878 -0.763 C10 A1L9M 8 A1L9M C13 C7 C 0 1 N N N N N N -9.845 -4.392 24.302 -4.691 0.991 -0.488 C13 A1L9M 9 A1L9M C15 C8 C 0 1 N N N N N N -12.130 -4.464 25.537 -5.794 -1.002 0.539 C15 A1L9M 10 A1L9M C17 C9 C 0 1 N N N N N N -7.640 -2.987 22.531 -2.507 -0.217 -1.729 C17 A1L9M 11 A1L9M C1 C10 C 0 1 N N N N N N -4.283 -6.214 26.674 7.202 1.082 0.555 C1 A1L9M 12 A1L9M O1 O1 O 0 1 N N N N N N -4.617 -7.073 25.571 5.775 1.133 0.496 O1 A1L9M 13 A1L9M C2 C11 C 0 1 N N N N N N -4.105 -9.176 24.808 3.857 -0.227 0.363 C2 A1L9M 14 A1L9M C3 C12 C 0 1 Y N N N N N -3.426 -10.398 25.142 3.215 -1.542 0.153 C3 A1L9M 15 A1L9M S1 S1 S 0 1 Y N N N N N -2.057 -12.162 26.412 2.792 -3.993 -0.318 S1 A1L9M 16 A1L9M N2 N3 N 0 1 Y N N N N N -2.827 -11.234 24.146 1.897 -1.717 0.252 N2 A1L9M 17 A1L9M O2 O2 O 0 1 N N N N N N -5.353 -10.369 23.231 3.542 2.050 0.799 O2 A1L9M 18 A1L9M N4 N4 N 0 1 N N N N N N -5.446 -8.387 22.603 1.692 0.922 0.314 N4 A1L9M 19 A1L9M N5 N5 N 0 1 N N N N N N -6.960 -5.013 22.404 -1.110 0.874 -0.262 N5 A1L9M 20 A1L9M C9 C13 C 0 1 N N N N N N -4.788 -6.395 21.238 0.898 2.800 -1.001 C9 A1L9M 21 A1L9M O3 O3 O 0 1 N N N N N N -3.879 -5.644 21.442 1.522 2.302 -1.907 O3 A1L9M 22 A1L9M C11 C14 C 0 1 N N R N N N -8.305 -4.408 24.466 -3.397 1.805 -0.550 C11 A1L9M 23 A1L9M C12 C15 C 0 1 N N N N N N -7.834 -5.695 25.138 -3.247 2.604 0.747 C12 A1L9M 24 A1L9M S2 S2 S 0 1 N N N N N N -7.750 -7.120 24.016 -1.564 3.300 0.781 S2 A1L9M 25 A1L9M C14 C16 C 0 1 N N N N N N -10.670 -3.991 25.535 -4.549 -0.112 0.563 C14 A1L9M 26 A1L9M C16 C17 C 0 1 N N N N N N -12.720 -5.022 24.236 -5.653 -2.105 1.590 C16 A1L9M 27 A1L9M O4 O4 O 0 1 N N N N N N -13.948 -5.716 24.396 -6.815 -2.936 1.567 O4 A1L9M 28 A1L9M O5 O5 O 0 1 N N N N N N -7.263 -1.955 23.186 -1.598 -1.196 -1.895 O5 A1L9M 29 A1L9M O6 O6 O 0 1 N N N N N N -8.015 -3.007 21.339 -3.538 -0.230 -2.370 O6 A1L9M 30 A1L9M H1 H1 H 0 1 N N N N N N -1.237 -12.641 23.004 -0.134 -4.215 -0.054 H1 A1L9M 31 A1L9M H2 H2 H 0 1 N N N N N N -3.761 -10.517 27.255 4.991 -2.703 -0.277 H2 A1L9M 32 A1L9M H4 H4 H 0 1 N N N N N N -5.056 -6.504 23.345 1.293 2.826 1.096 H4 A1L9M 33 A1L9M H5 H5 H 0 1 N N N N N N -7.560 -6.917 21.651 -0.570 1.308 1.711 H5 A1L9M 34 A1L9M H7 H7 H 0 1 N N N N N N -10.086 -3.684 23.496 -5.519 1.646 -0.218 H7 A1L9M 35 A1L9M H8 H8 H 0 1 N N N N N N -10.159 -5.404 24.007 -4.885 0.542 -1.462 H8 A1L9M 36 A1L9M H9 H9 H 0 1 N N N N N N -12.750 -3.604 25.832 -6.675 -0.400 0.760 H9 A1L9M 37 A1L9M H10 H10 H 0 1 N N N N N N -4.918 -5.316 26.646 7.585 0.589 -0.340 H10 A1L9M 38 A1L9M H11 H11 H 0 1 N N N N N N -4.448 -6.751 27.620 7.601 2.095 0.610 H11 A1L9M 39 A1L9M H12 H12 H 0 1 N N N N N N -3.226 -5.917 26.601 7.510 0.521 1.438 H12 A1L9M 40 A1L9M H15 H15 H 0 1 N N N N N N -5.848 -8.863 21.821 1.269 0.064 0.149 H15 A1L9M 41 A1L9M H18 H18 H 0 1 N N N N N N -5.071 -6.674 20.234 0.352 3.718 -1.162 H18 A1L9M 42 A1L9M H19 H19 H 0 1 N N N N N N -8.036 -3.570 25.126 -3.453 2.499 -1.389 H19 A1L9M 43 A1L9M H20 H20 H 0 1 N N N N N N -8.532 -5.936 25.953 -3.980 3.410 0.771 H20 A1L9M 44 A1L9M H21 H21 H 0 1 N N N N N N -6.831 -5.522 25.554 -3.393 1.947 1.604 H21 A1L9M 45 A1L9M H22 H22 H 0 1 N N N N N N -10.177 -4.411 26.424 -3.668 -0.714 0.342 H22 A1L9M 46 A1L9M H23 H23 H 0 1 N N N N N N -11.988 -5.716 23.797 -4.771 -2.707 1.368 H23 A1L9M 47 A1L9M H24 H24 H 0 1 N N N N N N -12.888 -4.181 23.547 -5.547 -1.655 2.577 H24 A1L9M 48 A1L9M H25 H25 H 0 1 N N N N N N -14.248 -6.029 23.551 -6.794 -3.658 2.209 H25 A1L9M 49 A1L9M H26 H26 H 0 1 N N N N N N -7.310 -1.189 22.626 -1.810 -1.888 -2.536 H26 A1L9M 50 A1L9M H3 H3 H 0 1 N N N N N N -12.214 -5.255 26.297 -5.899 -1.452 -0.448 H3 A1L9M 51 A1L9M H6 H6 H 0 1 N N N N N N -10.670 -2.893 25.600 -4.444 0.338 1.550 H6 A1L9M 52 A1L9M H13 H13 H 0 1 N N N N N N -0.180 -12.636 24.249 -0.563 -2.636 0.326 H13 A1L9M 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1L9M C9 O3 DOUB N N 1 A1L9M C9 C7 SING N N 2 A1L9M O6 C17 DOUB N N 3 A1L9M N5 C8 SING N N 4 A1L9M N5 C10 DOUB N N 5 A1L9M C7 C8 SING N N 6 A1L9M C7 N4 SING N N 7 A1L9M C8 S2 SING N N 8 A1L9M C17 C10 SING N N 9 A1L9M C17 O5 SING N N 10 A1L9M N4 C6 SING N N 11 A1L9M C10 C11 SING N N 12 A1L9M O2 C6 DOUB N N 13 A1L9M C6 C2 SING N N 14 A1L9M N3 C5 SING N N 15 A1L9M S2 C12 SING N N 16 A1L9M N2 C5 DOUB Y N 17 A1L9M N2 C3 SING Y N 18 A1L9M C16 O4 SING N N 19 A1L9M C16 C15 SING N N 20 A1L9M C13 C11 SING N N 21 A1L9M C13 C14 SING N N 22 A1L9M C11 C12 SING N N 23 A1L9M C5 S1 SING Y N 24 A1L9M C2 C3 SING N N 25 A1L9M C2 N1 DOUB N Z 26 A1L9M C3 C4 DOUB Y N 27 A1L9M C14 C15 SING N N 28 A1L9M O1 N1 SING N N 29 A1L9M O1 C1 SING N N 30 A1L9M C4 S1 SING Y N 31 A1L9M N3 H1 SING N N 32 A1L9M C4 H2 SING N N 33 A1L9M C7 H4 SING N N 34 A1L9M C8 H5 SING N N 35 A1L9M C13 H7 SING N N 36 A1L9M C13 H8 SING N N 37 A1L9M C15 H9 SING N N 38 A1L9M C1 H10 SING N N 39 A1L9M C1 H11 SING N N 40 A1L9M C1 H12 SING N N 41 A1L9M N4 H15 SING N N 42 A1L9M C9 H18 SING N N 43 A1L9M C11 H19 SING N N 44 A1L9M C12 H20 SING N N 45 A1L9M C12 H21 SING N N 46 A1L9M C14 H22 SING N N 47 A1L9M C16 H23 SING N N 48 A1L9M C16 H24 SING N N 49 A1L9M O4 H25 SING N N 50 A1L9M O5 H26 SING N N 51 A1L9M C15 H3 SING N N 52 A1L9M C14 H6 SING N N 53 A1L9M N3 H13 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1L9M InChI InChI 1.06 "InChI=1S/C17H23N5O6S2/c1-28-22-13(11-8-30-17(18)20-11)14(25)19-10(6-24)15-21-12(16(26)27)9(7-29-15)4-2-3-5-23/h6,8-10,15,23H,2-5,7H2,1H3,(H2,18,20)(H,19,25)(H,26,27)/b22-13-/t9-,10-,15+/m0/s1" A1L9M InChIKey InChI 1.06 YHATZFJNVVQWAS-QTAJFMBVSA-N A1L9M SMILES_CANONICAL CACTVS 3.385 "CO\N=C(/C(=O)N[C@@H](C=O)[C@H]1SC[C@H](CCCCO)C(=N1)C(O)=O)c2csc(N)n2" A1L9M SMILES CACTVS 3.385 "CON=C(C(=O)N[CH](C=O)[CH]1SC[CH](CCCCO)C(=N1)C(O)=O)c2csc(N)n2" A1L9M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO/N=C(/c1csc(n1)N)\C(=O)N[C@@H](C=O)[C@@H]2N=C([C@H](CS2)CCCCO)C(=O)O" A1L9M SMILES "OpenEye OEToolkits" 2.0.7 "CON=C(c1csc(n1)N)C(=O)NC(C=O)C2N=C(C(CS2)CCCCO)C(=O)O" # _pdbx_chem_comp_identifier.comp_id A1L9M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},5~{R})-2-[(1~{S})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-(4-oxidanylbutyl)-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1L9M "Create component" 2025-05-08 PDBJ A1L9M "Initial release" 2026-04-22 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1L9M _pdbx_chem_comp_synonyms.name "(2~{R},5~{R})-2-[(1~{S})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]-2-oxidanylidene-ethyl]-5-(4-oxidanylbutyl)-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1L9M _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #