data_A1LTQ # _chem_comp.id A1LTQ _chem_comp.name "ADP-RIBOXANATED ARGININE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C21 H32 N8 O15 P2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms "5-[5-[[[[5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2-azanylidene-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxazol-3-yl]-2-azanyl-pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-22 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 698.471 _chem_comp.one_letter_code R _chem_comp.three_letter_code A1LTQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XN6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LTQ C1 C1 C 0 1 N N R N N N 2.121 0.294 1.229 -7.629 0.233 0.372 C1 A1LTQ 1 A1LTQ O1 O1 O 0 1 N N N N N N 2.075 -1.073 1.780 -8.353 -0.948 -0.041 O1 A1LTQ 2 A1LTQ CZ CZ C 0 1 N N N N N N 3.252 -1.686 1.467 -7.450 -1.955 -0.094 CZ A1LTQ 3 A1LTQ NH1 NH1 N 0 1 N N N N N N 3.514 -2.891 1.810 -7.485 -2.941 -0.942 NH1 A1LTQ 4 A1LTQ NE NE N 0 1 N N N N N N 4.075 -0.879 0.773 -6.490 -1.787 0.878 NE A1LTQ 5 A1LTQ CD CD C 0 1 N N N N N N 5.405 -1.238 0.292 -5.616 -2.826 1.427 CD A1LTQ 6 A1LTQ CG CG C 0 1 N N N N N N 6.455 -1.283 1.398 -4.331 -2.902 0.599 CG A1LTQ 7 A1LTQ CB CB C 0 1 N N N N N N 7.890 -1.420 0.884 -3.418 -3.987 1.173 CB A1LTQ 8 A1LTQ CA CA C 0 1 N N S N Y N 8.197 -2.728 0.143 -2.134 -4.063 0.345 CA A1LTQ 9 A1LTQ N N N 0 1 N N N Y Y N 7.905 -3.905 0.964 -2.455 -4.506 -1.019 N A1LTQ 10 A1LTQ C C C 0 1 N N N N Y Y 9.642 -2.714 -0.339 -1.183 -5.044 0.981 C A1LTQ 11 A1LTQ OXT OXT O 0 1 N Y N N Y Y 9.791 -2.001 -1.431 -0.442 -4.673 2.036 OXT A1LTQ 12 A1LTQ O O O 0 1 N N N N Y Y 10.546 -3.291 0.225 -1.089 -6.166 0.541 O A1LTQ 13 A1LTQ C8 C8 C 0 1 N N S N N N 3.484 0.434 0.559 -6.506 -0.367 1.261 C8 A1LTQ 14 A1LTQ O4 O4 O 0 1 N N N N N N 3.228 0.687 -0.808 -5.296 0.288 0.889 O4 A1LTQ 15 A1LTQ C9 C9 C 0 1 N N R N N N 1.903 1.230 -0.942 -5.384 0.732 -0.466 C9 A1LTQ 16 A1LTQ C10 C10 C 0 1 N N N N N N 1.938 2.730 -0.790 -4.788 2.136 -0.590 C10 A1LTQ 17 A1LTQ O5 O5 O 0 1 N N N N N N 0.657 3.279 -1.157 -3.383 2.081 -0.334 O5 A1LTQ 18 A1LTQ P1 P1 P 0 1 N N N N N N 0.449 4.834 -1.336 -2.432 3.379 -0.378 P1 A1LTQ 19 A1LTQ O6 O6 O 0 1 N N N N N N 1.012 5.228 -2.692 -2.856 4.395 0.797 O6 A1LTQ 20 A1LTQ O7 O7 O 0 1 N N N N N N 0.939 5.663 -0.213 -2.577 4.052 -1.688 O7 A1LTQ 21 A1LTQ O8 O8 O 0 1 N N N N N N -1.128 4.998 -1.467 -0.900 2.929 -0.172 O8 A1LTQ 22 A1LTQ P2 P2 P 0 1 N N N N N N -2.342 4.364 -0.658 0.519 3.652 -0.408 P2 A1LTQ 23 A1LTQ O9 O9 O 0 1 N N N N N N -1.933 4.433 0.804 0.840 3.701 -1.985 O9 A1LTQ 24 A1LTQ O10 O10 O 0 1 N N N N N N -3.583 5.104 -0.974 0.466 5.031 0.128 O10 A1LTQ 25 A1LTQ O11 O11 O 0 1 N N N N N N -2.345 2.843 -1.085 1.675 2.826 0.349 O11 A1LTQ 26 A1LTQ C11 C11 C 0 1 N N N N N N -3.017 1.849 -0.284 3.032 3.269 0.417 C11 A1LTQ 27 A1LTQ C12 C12 C 0 1 N N R N N N -2.885 0.495 -0.938 3.861 2.254 1.206 C12 A1LTQ 28 A1LTQ O12 O12 O 0 1 N N N N N N -3.453 -0.507 -0.069 3.938 1.016 0.481 O12 A1LTQ 29 A1LTQ C13 C13 C 0 1 N N R N N N -4.710 -0.946 -0.577 5.238 0.450 0.749 C13 A1LTQ 30 A1LTQ C14 C14 C 0 1 N N R N N N -5.033 -0.070 -1.789 6.181 1.680 0.724 C14 A1LTQ 31 A1LTQ O13 O13 O 0 1 N N N N N N -5.761 -0.803 -2.752 7.356 1.439 1.500 O13 A1LTQ 32 A1LTQ C15 C15 C 0 1 N N S N N N -3.631 0.327 -2.264 5.302 2.775 1.377 C15 A1LTQ 33 A1LTQ O14 O14 O 0 1 N N N N N N -3.011 -0.683 -3.051 5.623 2.913 2.762 O14 A1LTQ 34 A1LTQ N4 N4 N 0 1 Y N N N N N -5.716 -0.842 0.481 5.610 -0.506 -0.297 N4 A1LTQ 35 A1LTQ C16 C16 C 0 1 Y N N N N N -5.756 0.041 1.531 5.130 -0.534 -1.573 C16 A1LTQ 36 A1LTQ N5 N5 N 0 1 Y N N N N N -6.796 -0.116 2.315 5.676 -1.514 -2.232 N5 A1LTQ 37 A1LTQ C17 C17 C 0 1 Y N N N N N -7.491 -1.170 1.741 6.538 -2.177 -1.424 C17 A1LTQ 38 A1LTQ C18 C18 C 0 1 Y N N N N N -6.837 -1.627 0.609 6.510 -1.535 -0.175 C18 A1LTQ 39 A1LTQ N6 N6 N 0 1 Y N N N N N -7.236 -2.637 -0.189 7.283 -1.994 0.805 N6 A1LTQ 40 A1LTQ C19 C19 C 0 1 Y N N N N N -8.376 -3.176 0.242 8.066 -3.033 0.610 C19 A1LTQ 41 A1LTQ N7 N7 N 0 1 Y N N N N N -9.115 -2.842 1.311 8.128 -3.667 -0.547 N7 A1LTQ 42 A1LTQ C20 C20 C 0 1 Y N N N N N -8.692 -1.819 2.101 7.387 -3.286 -1.581 C20 A1LTQ 43 A1LTQ N8 N8 N 0 1 N N N N N N -9.423 -1.482 3.164 7.460 -3.955 -2.790 N8 A1LTQ 44 A1LTQ C21 C21 C 0 1 N N R N N N 1.090 0.483 0.112 -6.867 0.762 -0.864 C21 A1LTQ 45 A1LTQ O15 O15 O 0 1 N N N N N N 0.601 -0.737 -0.420 -7.096 -0.089 -1.988 O15 A1LTQ 46 A1LTQ H1 H1 H 0 1 N N N N N N 1.990 1.053 2.014 -8.247 0.976 0.877 H1 A1LTQ 47 A1LTQ HH11 HH11 H 0 0 N N N N N N 2.762 -3.307 2.322 -8.196 -2.991 -1.599 HH11 A1LTQ 48 A1LTQ HD2 HD2 H 0 1 N N N N N N 5.350 -2.231 -0.178 -5.368 -2.584 2.460 HD2 A1LTQ 49 A1LTQ HD3 HD3 H 0 1 N N N N N N 5.718 -0.495 -0.456 -6.128 -3.788 1.391 HD3 A1LTQ 50 A1LTQ HG2 HG2 H 0 1 N N N N N N 6.383 -0.354 1.982 -4.579 -3.144 -0.435 HG2 A1LTQ 51 A1LTQ HG3 HG3 H 0 1 N N N N N N 6.236 -2.143 2.049 -3.819 -1.940 0.634 HG3 A1LTQ 52 A1LTQ HB2 HB2 H 0 1 N N N N N N 8.086 -0.585 0.195 -3.171 -3.745 2.206 HB2 A1LTQ 53 A1LTQ HB3 HB3 H 0 1 N N N N N N 8.569 -1.351 1.747 -3.930 -4.949 1.137 HB3 A1LTQ 54 A1LTQ HA HA H 0 1 N N N N Y N 7.552 -2.761 -0.747 -1.668 -3.078 0.307 HA A1LTQ 55 A1LTQ H H H 0 1 N N N Y Y N 8.118 -4.734 0.447 -2.888 -5.417 -1.010 H A1LTQ 56 A1LTQ H2 H2 H 0 1 N Y N Y Y N 8.461 -3.878 1.794 -3.040 -3.831 -1.489 H2 A1LTQ 57 A1LTQ HXT HXT H 0 1 N Y N N Y Y 10.703 -2.014 -1.696 0.154 -5.337 2.410 HXT A1LTQ 58 A1LTQ H13 H13 H 0 1 N N N N N N 4.074 1.232 1.034 -6.727 -0.244 2.321 H13 A1LTQ 59 A1LTQ H14 H14 H 0 1 N N N N N N 1.499 0.984 -1.935 -4.843 0.044 -1.115 H14 A1LTQ 60 A1LTQ H15 H15 H 0 1 N N N N N N 2.162 2.988 0.256 -4.959 2.516 -1.597 H15 A1LTQ 61 A1LTQ H16 H16 H 0 1 N N N N N N 2.717 3.147 -1.445 -5.263 2.797 0.135 H16 A1LTQ 62 A1LTQ H17 H17 H 0 1 N N N N N N 1.603 5.964 -2.588 -2.785 4.019 1.686 H17 A1LTQ 63 A1LTQ H18 H18 H 0 1 N N N N N N -2.563 4.957 1.285 0.890 2.831 -2.404 H18 A1LTQ 64 A1LTQ H19 H19 H 0 1 N N N N N N -2.562 1.817 0.717 3.435 3.362 -0.592 H19 A1LTQ 65 A1LTQ H20 H20 H 0 1 N N N N N N -4.082 2.110 -0.195 3.073 4.238 0.915 H20 A1LTQ 66 A1LTQ H21 H21 H 0 1 N N N N N N -1.819 0.282 -1.105 3.408 2.085 2.182 H21 A1LTQ 67 A1LTQ H22 H22 H 0 1 N N N N N N -4.636 -1.992 -0.910 5.255 -0.027 1.729 H22 A1LTQ 68 A1LTQ H23 H23 H 0 1 N N N N N N -5.583 0.826 -1.465 6.442 1.949 -0.300 H23 A1LTQ 69 A1LTQ H24 H24 H 0 1 N N N N N N -5.953 -0.245 -3.497 7.976 2.180 1.515 H24 A1LTQ 70 A1LTQ H25 H25 H 0 1 N N N N N N -3.673 1.288 -2.797 5.428 3.725 0.858 H25 A1LTQ 71 A1LTQ H26 H26 H 0 1 N N N N N N -2.148 -0.390 -3.320 6.518 3.237 2.928 H26 A1LTQ 72 A1LTQ H27 H27 H 0 1 N N N N N N -5.001 0.795 1.696 4.404 0.156 -1.977 H27 A1LTQ 73 A1LTQ H28 H28 H 0 1 N N N N N N -8.758 -3.994 -0.351 8.682 -3.381 1.427 H28 A1LTQ 74 A1LTQ H29 H29 H 0 1 N N N N N N -10.226 -2.076 3.219 6.921 -3.661 -3.541 H29 A1LTQ 75 A1LTQ H30 H30 H 0 1 N N N N N N -8.874 -1.587 3.993 8.049 -4.719 -2.887 H30 A1LTQ 76 A1LTQ H31 H31 H 0 1 N N N N N N 0.269 1.121 0.470 -7.177 1.782 -1.091 H31 A1LTQ 77 A1LTQ H32 H32 H 0 1 N N N N N N 0.097 -1.193 0.244 -6.643 0.193 -2.794 H32 A1LTQ 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LTQ C1 O1 SING N N 1 A1LTQ O1 CZ SING N N 2 A1LTQ CZ NH1 DOUB N N 3 A1LTQ CZ NE SING N N 4 A1LTQ NE CD SING N N 5 A1LTQ CD CG SING N N 6 A1LTQ CG CB SING N N 7 A1LTQ CB CA SING N N 8 A1LTQ CA N SING N N 9 A1LTQ CA C SING N N 10 A1LTQ C OXT SING N N 11 A1LTQ C O DOUB N N 12 A1LTQ NE C8 SING N N 13 A1LTQ C8 O4 SING N N 14 A1LTQ O4 C9 SING N N 15 A1LTQ C9 C10 SING N N 16 A1LTQ C10 O5 SING N N 17 A1LTQ O5 P1 SING N N 18 A1LTQ P1 O6 SING N N 19 A1LTQ P1 O7 DOUB N N 20 A1LTQ P1 O8 SING N N 21 A1LTQ O8 P2 SING N N 22 A1LTQ P2 O9 SING N N 23 A1LTQ P2 O10 DOUB N N 24 A1LTQ P2 O11 SING N N 25 A1LTQ O11 C11 SING N N 26 A1LTQ C11 C12 SING N N 27 A1LTQ C12 O12 SING N N 28 A1LTQ O12 C13 SING N N 29 A1LTQ C13 C14 SING N N 30 A1LTQ C14 O13 SING N N 31 A1LTQ C14 C15 SING N N 32 A1LTQ C15 O14 SING N N 33 A1LTQ C13 N4 SING N N 34 A1LTQ N4 C16 SING Y N 35 A1LTQ C16 N5 DOUB Y N 36 A1LTQ N5 C17 SING Y N 37 A1LTQ C17 C18 DOUB Y N 38 A1LTQ C18 N6 SING Y N 39 A1LTQ N6 C19 DOUB Y N 40 A1LTQ C19 N7 SING Y N 41 A1LTQ N7 C20 DOUB Y N 42 A1LTQ C20 N8 SING N N 43 A1LTQ C9 C21 SING N N 44 A1LTQ C21 O15 SING N N 45 A1LTQ C1 C8 SING N N 46 A1LTQ C12 C15 SING N N 47 A1LTQ N4 C18 SING Y N 48 A1LTQ C1 C21 SING N N 49 A1LTQ C17 C20 SING Y N 50 A1LTQ C1 H1 SING N N 51 A1LTQ NH1 HH11 SING N N 52 A1LTQ CD HD2 SING N N 53 A1LTQ CD HD3 SING N N 54 A1LTQ CG HG2 SING N N 55 A1LTQ CG HG3 SING N N 56 A1LTQ CB HB2 SING N N 57 A1LTQ CB HB3 SING N N 58 A1LTQ CA HA SING N N 59 A1LTQ N H SING N N 60 A1LTQ N H2 SING N N 61 A1LTQ OXT HXT SING N N 62 A1LTQ C8 H13 SING N N 63 A1LTQ C9 H14 SING N N 64 A1LTQ C10 H15 SING N N 65 A1LTQ C10 H16 SING N N 66 A1LTQ O6 H17 SING N N 67 A1LTQ O9 H18 SING N N 68 A1LTQ C11 H19 SING N N 69 A1LTQ C11 H20 SING N N 70 A1LTQ C12 H21 SING N N 71 A1LTQ C13 H22 SING N N 72 A1LTQ C14 H23 SING N N 73 A1LTQ O13 H24 SING N N 74 A1LTQ C15 H25 SING N N 75 A1LTQ O14 H26 SING N N 76 A1LTQ C16 H27 SING N N 77 A1LTQ C19 H28 SING N N 78 A1LTQ N8 H29 SING N N 79 A1LTQ N8 H30 SING N N 80 A1LTQ C21 H31 SING N N 81 A1LTQ O15 H32 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LTQ InChI InChI 1.06 "InChI=1S/C21H32N8O15P2/c22-8(20(33)34)2-1-3-28-19-15(43-21(28)24)13(31)10(42-19)5-40-46(37,38)44-45(35,36)39-4-9-12(30)14(32)18(41-9)29-7-27-11-16(23)25-6-26-17(11)29/h6-10,12-15,18-19,24,30-32H,1-5,22H2,(H,33,34)(H,35,36)(H,37,38)(H2,23,25,26)/b24-21+/t8-,9+,10+,12+,13+,14+,15+,18+,19-/m0/s1" A1LTQ InChIKey InChI 1.06 FAXYOCQOJNLOLJ-QFBBLTADSA-N A1LTQ SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCN1[C@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2OC1=N)C(O)=O" A1LTQ SMILES CACTVS 3.385 "N[CH](CCCN1[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2OC1=N)C(O)=O" A1LTQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/1\N(C2C(O1)C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)CCCC(C(=O)O)N" A1LTQ SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C5C(O4)N(C(=N)O5)CCCC(C(=O)O)N)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id A1LTQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[5-[[[[5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2-azanylidene-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxazol-3-yl]-2-azanyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LTQ "Create component" 2024-02-14 PDBE A1LTQ "Modify descriptor" 2024-02-14 PDBE A1LTQ "Other modification" 2024-02-14 PDBE A1LTQ "Modify model coordinates code" 2024-06-21 PDBJ A1LTQ "Initial release" 2024-07-03 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1LTQ _pdbx_chem_comp_synonyms.name "5-[5-[[[[5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2-azanylidene-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxazol-3-yl]-2-azanyl-pentanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #