data_A1LVG # _chem_comp.id A1LVG _chem_comp.name "(3~{S},6~{S})-3-(2-methyl-2-oxidanyl-propyl)-6-[(2~{S})-4-oxidanylbutan-2-yl]piperazine-2,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-20 _chem_comp.pdbx_modified_date 2025-05-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.314 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LVG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XHX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LVG C02 C1 C 0 1 N N S N N N -2.350 -4.588 -13.957 1.208 -0.934 -0.915 C02 A1LVG 1 A1LVG C03 C2 C 0 1 N N N N N N -2.235 -3.348 -14.825 -0.018 -1.712 -0.543 C03 A1LVG 2 A1LVG C05 C3 C 0 1 N N S N N N -2.489 -1.733 -12.833 -1.507 0.183 -0.998 C05 A1LVG 3 A1LVG C06 C4 C 0 1 N N N N N N -2.327 -2.962 -11.946 -0.359 0.744 -1.782 C06 A1LVG 4 A1LVG C09 C5 C 0 1 N N N N N N -3.911 -1.185 -12.651 -1.732 1.045 0.245 C09 A1LVG 5 A1LVG C10 C6 C 0 1 N N S N N N -3.617 -5.371 -14.328 1.907 -0.458 0.360 C10 A1LVG 6 A1LVG C11 C7 C 0 1 N N N N N N -4.010 0.350 -12.593 -2.979 0.556 0.986 C11 A1LVG 7 A1LVG C12 C8 C 0 1 N N N N N N -3.487 0.997 -13.873 -3.276 1.493 2.158 C12 A1LVG 8 A1LVG C14 C9 C 0 1 N N N N N N -3.264 0.919 -11.393 -4.171 0.546 0.026 C14 A1LVG 9 A1LVG C15 C10 C 0 1 N N N N N N -3.615 -6.704 -13.564 2.304 -1.670 1.206 C15 A1LVG 10 A1LVG C16 C11 C 0 1 N N N N N N -4.861 -4.545 -14.023 3.159 0.338 -0.011 C16 A1LVG 11 A1LVG C17 C12 C 0 1 N N N N N N -6.160 -5.275 -14.407 3.789 0.918 1.257 C17 A1LVG 12 A1LVG N01 N1 N 0 1 N N N N N N -2.271 -4.317 -12.520 0.871 0.223 -1.734 N01 A1LVG 13 A1LVG N04 N2 N 0 1 N N N N N N -2.282 -2.017 -14.256 -1.247 -1.189 -0.587 N04 A1LVG 14 A1LVG O07 O1 O 0 1 N N N N N N -2.231 -2.793 -10.768 -0.554 1.709 -2.490 O07 A1LVG 15 A1LVG O08 O2 O 0 1 N N N N N N -2.065 -3.490 -16.005 0.112 -2.865 -0.187 O08 A1LVG 16 A1LVG O13 O3 O 0 1 N N N N N N -5.361 0.678 -12.461 -2.752 -0.766 1.478 O13 A1LVG 17 A1LVG O18 O4 O 0 1 N N N N N N -6.191 -5.577 -15.770 4.959 1.661 0.910 O18 A1LVG 18 A1LVG H021 H1 H 0 0 N N N N N N -1.498 -5.234 -14.215 1.885 -1.580 -1.474 H021 A1LVG 19 A1LVG H051 H2 H 0 0 N N N N N N -1.773 -0.965 -12.505 -2.405 0.206 -1.616 H051 A1LVG 20 A1LVG H091 H3 H 0 0 N N N N N N -4.523 -1.536 -13.495 -0.866 0.968 0.902 H091 A1LVG 21 A1LVG H092 H4 H 0 0 N N N N N N -4.316 -1.590 -11.712 -1.871 2.084 -0.053 H092 A1LVG 22 A1LVG H101 H5 H 0 0 N N N N N N -3.592 -5.586 -15.406 1.229 0.176 0.931 H101 A1LVG 23 A1LVG H123 H6 H 0 0 N N N N N N -3.574 2.091 -13.794 -3.449 2.501 1.783 H123 A1LVG 24 A1LVG H121 H7 H 0 0 N N N N N N -2.432 0.723 -14.018 -4.164 1.144 2.686 H121 A1LVG 25 A1LVG H122 H8 H 0 0 N N N N N N -4.078 0.644 -14.730 -2.427 1.500 2.842 H122 A1LVG 26 A1LVG H142 H9 H 0 0 N N N N N N -3.359 2.015 -11.388 -3.959 -0.121 -0.809 H142 A1LVG 27 A1LVG H141 H10 H 0 0 N N N N N N -3.693 0.510 -10.467 -5.059 0.198 0.554 H141 A1LVG 28 A1LVG H143 H11 H 0 0 N N N N N N -2.201 0.643 -11.458 -4.343 1.555 -0.349 H143 A1LVG 29 A1LVG H151 H12 H 0 0 N N N N N N -4.519 -7.276 -13.821 2.802 -1.332 2.114 H151 A1LVG 30 A1LVG H152 H13 H 0 0 N N N N N N -2.723 -7.284 -13.842 1.412 -2.237 1.470 H152 A1LVG 31 A1LVG H153 H14 H 0 0 N N N N N N -3.602 -6.506 -12.482 2.982 -2.305 0.635 H153 A1LVG 32 A1LVG H162 H15 H 0 0 N N N N N N -4.884 -4.327 -12.945 3.875 -0.320 -0.504 H162 A1LVG 33 A1LVG H161 H16 H 0 0 N N N N N N -4.806 -3.602 -14.587 2.888 1.149 -0.686 H161 A1LVG 34 A1LVG H172 H17 H 0 0 N N N N N N -6.229 -6.210 -13.832 3.073 1.576 1.750 H172 A1LVG 35 A1LVG H171 H18 H 0 0 N N N N N N -7.018 -4.631 -14.164 4.061 0.106 1.932 H171 A1LVG 36 A1LVG H011 H19 H 0 0 N N N N N N -2.174 -5.092 -11.896 1.570 0.633 -2.268 H011 A1LVG 37 A1LVG H041 H20 H 0 0 N N N N N N -2.166 -1.240 -14.875 -1.998 -1.748 -0.333 H041 A1LVG 38 A1LVG H131 H21 H 0 0 N N N N N N -5.456 1.622 -12.422 -3.503 -1.141 1.959 H131 A1LVG 39 A1LVG H181 H22 H 0 0 N N N N N N -7.002 -6.026 -15.977 5.411 2.059 1.667 H181 A1LVG 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LVG N01 C02 SING N N 1 A1LVG C06 N01 SING N N 2 A1LVG C02 C03 SING N N 3 A1LVG C02 C10 SING N N 4 A1LVG C03 N04 SING N N 5 A1LVG C03 O08 DOUB N N 6 A1LVG N04 C05 SING N N 7 A1LVG C05 C06 SING N N 8 A1LVG C05 C09 SING N N 9 A1LVG C06 O07 DOUB N N 10 A1LVG C09 C11 SING N N 11 A1LVG C10 C15 SING N N 12 A1LVG C10 C16 SING N N 13 A1LVG C11 C12 SING N N 14 A1LVG C11 O13 SING N N 15 A1LVG C11 C14 SING N N 16 A1LVG C16 C17 SING N N 17 A1LVG C17 O18 SING N N 18 A1LVG C02 H021 SING N N 19 A1LVG C05 H051 SING N N 20 A1LVG C09 H091 SING N N 21 A1LVG C09 H092 SING N N 22 A1LVG C10 H101 SING N N 23 A1LVG C12 H123 SING N N 24 A1LVG C12 H121 SING N N 25 A1LVG C12 H122 SING N N 26 A1LVG C14 H142 SING N N 27 A1LVG C14 H141 SING N N 28 A1LVG C14 H143 SING N N 29 A1LVG C15 H151 SING N N 30 A1LVG C15 H152 SING N N 31 A1LVG C15 H153 SING N N 32 A1LVG C16 H162 SING N N 33 A1LVG C16 H161 SING N N 34 A1LVG C17 H172 SING N N 35 A1LVG C17 H171 SING N N 36 A1LVG N01 H011 SING N N 37 A1LVG N04 H041 SING N N 38 A1LVG O13 H131 SING N N 39 A1LVG O18 H181 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LVG InChI InChI 1.06 "InChI=1S/C12H22N2O4/c1-7(4-5-15)9-11(17)13-8(10(16)14-9)6-12(2,3)18/h7-9,15,18H,4-6H2,1-3H3,(H,13,17)(H,14,16)/t7-,8+,9?/m1/s1" A1LVG InChIKey InChI 1.06 BJPOUTJDLWKJCE-WGTSGOJVSA-N A1LVG SMILES_CANONICAL CACTVS 3.385 "C[C@@H](CCO)[C@@H]1NC(=O)[C@H](CC(C)(C)O)NC1=O" A1LVG SMILES CACTVS 3.385 "C[CH](CCO)[CH]1NC(=O)[CH](CC(C)(C)O)NC1=O" A1LVG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CCO)[C@H]1C(=O)N[C@H](C(=O)N1)CC(C)(C)O" A1LVG SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCO)C1C(=O)NC(C(=O)N1)CC(C)(C)O" # _pdbx_chem_comp_identifier.comp_id A1LVG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},6~{S})-3-(2-methyl-2-oxidanyl-propyl)-6-[(2~{S})-4-oxidanylbutan-2-yl]piperazine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LVG "Create component" 2023-12-20 PDBJ A1LVG "Initial release" 2025-05-28 RCSB #