data_A1LVJ # _chem_comp.id A1LVJ _chem_comp.name "5-[4-[[(1~{R})-1-[3-[bis(fluoranyl)methyl]-2-fluoranyl-phenyl]ethyl]amino]-2-methyl-6-morpholin-4-yl-7-oxidanylidene-pyrido[4,3-d]pyrimidin-8-yl]pyridine-2-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H24 F3 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-22 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 535.520 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LVJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XJJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LVJ C10 C1 C 0 1 N N N N N N 2.732 28.146 -47.103 3.134 0.052 -0.053 C10 A1LVJ 1 A1LVJ C15 C2 C 0 1 N N N N N N 2.084 29.748 -45.293 0.697 0.083 0.333 C15 A1LVJ 2 A1LVJ C17 C3 C 0 1 N N N N N N -1.217 26.834 -45.795 1.363 -3.901 1.270 C17 A1LVJ 3 A1LVJ C20 C4 C 0 1 N N N N N N -3.314 28.214 -47.021 0.946 -5.310 -1.176 C20 A1LVJ 4 A1LVJ C21 C5 C 0 1 N N N N N N -1.929 28.814 -46.830 0.917 -3.780 -1.105 C21 A1LVJ 5 A1LVJ C22 C6 C 0 1 Y N N N N N 3.830 27.567 -47.948 4.442 0.712 -0.228 C22 A1LVJ 6 A1LVJ C24 C7 C 0 1 Y N N N N N 4.784 27.193 -50.053 6.340 1.267 -1.570 C24 A1LVJ 7 A1LVJ C28 C8 C 0 1 N N N N N N 7.015 26.092 -50.232 8.114 2.635 -0.591 C28 A1LVJ 8 A1LVJ C01 C9 C 0 1 N N N N N N 1.029 32.119 -41.278 -3.034 1.465 2.441 C01 A1LVJ 9 A1LVJ C02 C10 C 0 1 N N R N N N 1.693 32.390 -42.606 -2.918 1.136 0.951 C02 A1LVJ 10 A1LVJ N03 N1 N 0 1 N N N N N N 1.384 31.321 -43.514 -1.735 0.301 0.726 N03 A1LVJ 11 A1LVJ C04 C11 C 0 1 N N N N N N 2.422 30.736 -44.358 -0.504 0.886 0.559 C04 A1LVJ 12 A1LVJ N05 N2 N 0 1 N N N N N N 3.707 31.151 -44.155 -0.352 2.207 0.596 N05 A1LVJ 13 A1LVJ C06 C12 C 0 1 N N N N N N 4.707 30.580 -44.937 0.825 2.784 0.438 C06 A1LVJ 14 A1LVJ C07 C13 C 0 1 N N N N N N 6.194 31.021 -44.761 0.881 4.289 0.499 C07 A1LVJ 15 A1LVJ N08 N3 N 0 1 N N N N N N 4.372 29.640 -45.878 1.950 2.139 0.230 N08 A1LVJ 16 A1LVJ C09 C14 C 0 1 N N N N N N 3.081 29.222 -46.067 1.968 0.806 0.166 C09 A1LVJ 17 A1LVJ C11 C15 C 0 1 N N N N N N 1.342 27.714 -47.324 3.018 -1.351 -0.105 C11 A1LVJ 18 A1LVJ O12 O1 O 0 1 N N N N N N 1.202 26.883 -48.145 4.019 -2.024 -0.294 O12 A1LVJ 19 A1LVJ N13 N4 N 0 1 N N N N N N 0.271 28.275 -46.523 1.835 -1.965 0.047 N13 A1LVJ 20 A1LVJ C14 C16 C 0 1 N N N N N N 0.620 29.261 -45.519 0.689 -1.295 0.258 C14 A1LVJ 21 A1LVJ N16 N5 N 0 1 N N N N N N -0.940 27.870 -46.664 1.793 -3.329 -0.014 N16 A1LVJ 22 A1LVJ C18 C17 C 0 1 N N N N N N -2.648 26.286 -45.927 1.387 -5.429 1.176 C18 A1LVJ 23 A1LVJ O19 O2 O 0 1 N N N N N N -3.597 27.291 -46.001 0.555 -5.848 0.090 O19 A1LVJ 24 A1LVJ C23 C18 C 0 1 Y N N N N N 3.725 27.690 -49.310 5.122 0.629 -1.451 C23 A1LVJ 25 A1LVJ C25 C19 C 0 1 Y N N N N N 5.865 26.624 -49.396 6.851 1.970 -0.476 C25 A1LVJ 26 A1LVJ N26 N6 N 0 1 Y N N N N N 5.920 26.526 -48.093 6.182 2.025 0.672 N26 A1LVJ 27 A1LVJ C27 C20 C 0 1 Y N N N N N 4.934 27.000 -47.352 5.019 1.436 0.823 C27 A1LVJ 28 A1LVJ N29 N7 N 0 1 N N N N N N 7.840 25.711 -50.901 9.116 3.163 -0.682 N29 A1LVJ 29 A1LVJ C30 C21 C 0 1 Y N N N N N 1.161 33.700 -43.199 -4.150 0.393 0.503 C30 A1LVJ 30 A1LVJ C31 C22 C 0 1 Y N N N N N -0.175 33.741 -43.534 -4.151 -0.988 0.470 C31 A1LVJ 31 A1LVJ C32 C23 C 0 1 Y N N N N N -0.746 34.888 -44.058 -5.281 -1.670 0.059 C32 A1LVJ 32 A1LVJ C33 C24 C 0 1 Y N N N N N 0.067 35.975 -44.312 -6.411 -0.971 -0.320 C33 A1LVJ 33 A1LVJ C34 C25 C 0 1 Y N N N N N 1.437 35.925 -44.021 -6.413 0.411 -0.288 C34 A1LVJ 34 A1LVJ C35 C26 C 0 1 N N N N N N 2.126 37.292 -44.299 -7.646 1.173 -0.701 C35 A1LVJ 35 A1LVJ F36 F1 F 0 1 N N N N N N 2.592 37.511 -45.513 -7.272 2.409 -1.239 F36 A1LVJ 36 A1LVJ F37 F2 F 0 1 N N N N N N 2.927 37.682 -43.287 -8.348 0.438 -1.663 F37 A1LVJ 37 A1LVJ C38 C27 C 0 1 Y N N N N N 2.012 34.777 -43.438 -5.284 1.095 0.129 C38 A1LVJ 38 A1LVJ F39 F3 F 0 1 N N N N N N 3.350 34.641 -43.147 -5.285 2.445 0.162 F39 A1LVJ 39 A1LVJ H2 H2 H 0 1 N N N N N N -0.511 26.014 -45.995 2.041 -3.575 2.059 H2 A1LVJ 40 A1LVJ H3 H3 H 0 1 N N N N N N -1.077 27.196 -44.766 0.351 -3.567 1.497 H3 A1LVJ 41 A1LVJ H4 H4 H 0 1 N N N N N N -4.063 29.019 -46.998 0.255 -5.652 -1.946 H4 A1LVJ 42 A1LVJ H5 H5 H 0 1 N N N N N N -3.355 27.702 -47.994 1.955 -5.644 -1.418 H5 A1LVJ 43 A1LVJ H6 H6 H 0 1 N N N N N N -1.687 29.420 -47.715 1.269 -3.366 -2.050 H6 A1LVJ 44 A1LVJ H7 H7 H 0 1 N N N N N N -1.948 29.458 -45.939 -0.102 -3.444 -0.917 H7 A1LVJ 45 A1LVJ H8 H8 H 0 1 N N N N N N 4.768 27.248 -51.131 6.889 1.227 -2.499 H8 A1LVJ 46 A1LVJ H9 H9 H 0 1 N N N N N N 1.262 32.935 -40.578 -2.143 2.002 2.765 H9 A1LVJ 47 A1LVJ H10 H10 H 0 1 N N N N N N -0.060 32.057 -41.419 -3.914 2.086 2.609 H10 A1LVJ 48 A1LVJ H11 H11 H 0 1 N N N N N N 1.401 31.168 -40.870 -3.129 0.540 3.011 H11 A1LVJ 49 A1LVJ H12 H12 H 0 1 N N N N N N 2.780 32.473 -42.463 -2.824 2.061 0.382 H12 A1LVJ 50 A1LVJ H13 H13 H 0 1 N N N N N N 0.448 30.974 -43.569 -1.822 -0.664 0.696 H13 A1LVJ 51 A1LVJ H14 H14 H 0 1 N N N N N N 6.826 30.473 -45.475 -0.119 4.683 0.675 H14 A1LVJ 52 A1LVJ H15 H15 H 0 1 N N N N N N 6.281 32.101 -44.949 1.541 4.595 1.311 H15 A1LVJ 53 A1LVJ H16 H16 H 0 1 N N N N N N 6.523 30.800 -43.735 1.264 4.677 -0.445 H16 A1LVJ 54 A1LVJ H17 H17 H 0 1 N N N N N N -0.165 29.675 -44.903 -0.239 -1.836 0.375 H17 A1LVJ 55 A1LVJ H19 H19 H 0 1 N N N N N N -2.867 25.658 -45.051 2.409 -5.767 1.002 H19 A1LVJ 56 A1LVJ H20 H20 H 0 1 N N N N N N -2.709 25.676 -46.840 1.015 -5.857 2.106 H20 A1LVJ 57 A1LVJ H21 H21 H 0 1 N N N N N N 2.866 28.148 -49.777 4.702 0.078 -2.280 H21 A1LVJ 58 A1LVJ H22 H22 H 0 1 N N N N N N 4.994 26.942 -46.275 4.501 1.510 1.768 H22 A1LVJ 59 A1LVJ H23 H23 H 0 1 N N N N N N -0.787 32.864 -43.385 -3.268 -1.535 0.766 H23 A1LVJ 60 A1LVJ H24 H24 H 0 1 N N N N N N -1.805 34.932 -44.264 -5.280 -2.750 0.033 H24 A1LVJ 61 A1LVJ H25 H25 H 0 1 N N N N N N -0.357 36.872 -44.739 -7.293 -1.505 -0.643 H25 A1LVJ 62 A1LVJ H26 H26 H 0 1 N N N N N N 1.274 37.983 -44.224 -8.283 1.333 0.169 H26 A1LVJ 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LVJ N29 C28 TRIP N N 1 A1LVJ C28 C25 SING N N 2 A1LVJ C24 C25 DOUB Y N 3 A1LVJ C24 C23 SING Y N 4 A1LVJ C25 N26 SING Y N 5 A1LVJ C23 C22 DOUB Y N 6 A1LVJ O12 C11 DOUB N N 7 A1LVJ N26 C27 DOUB Y N 8 A1LVJ C22 C27 SING Y N 9 A1LVJ C22 C10 SING N N 10 A1LVJ C11 C10 SING N N 11 A1LVJ C11 N13 SING N N 12 A1LVJ C10 C09 DOUB N N 13 A1LVJ C20 C21 SING N N 14 A1LVJ C20 O19 SING N N 15 A1LVJ C21 N16 SING N N 16 A1LVJ N16 N13 SING N N 17 A1LVJ N16 C17 SING N N 18 A1LVJ N13 C14 SING N N 19 A1LVJ C09 N08 SING N N 20 A1LVJ C09 C15 SING N N 21 A1LVJ O19 C18 SING N N 22 A1LVJ C18 C17 SING N N 23 A1LVJ N08 C06 DOUB N N 24 A1LVJ C14 C15 DOUB N N 25 A1LVJ F36 C35 SING N N 26 A1LVJ C15 C04 SING N N 27 A1LVJ C06 C07 SING N N 28 A1LVJ C06 N05 SING N N 29 A1LVJ C04 N05 DOUB N N 30 A1LVJ C04 N03 SING N N 31 A1LVJ C33 C32 DOUB Y N 32 A1LVJ C33 C34 SING Y N 33 A1LVJ C35 C34 SING N N 34 A1LVJ C35 F37 SING N N 35 A1LVJ C32 C31 SING Y N 36 A1LVJ C34 C38 DOUB Y N 37 A1LVJ C31 C30 DOUB Y N 38 A1LVJ N03 C02 SING N N 39 A1LVJ C38 C30 SING Y N 40 A1LVJ C38 F39 SING N N 41 A1LVJ C30 C02 SING N N 42 A1LVJ C02 C01 SING N N 43 A1LVJ C17 H2 SING N N 44 A1LVJ C17 H3 SING N N 45 A1LVJ C20 H4 SING N N 46 A1LVJ C20 H5 SING N N 47 A1LVJ C21 H6 SING N N 48 A1LVJ C21 H7 SING N N 49 A1LVJ C24 H8 SING N N 50 A1LVJ C01 H9 SING N N 51 A1LVJ C01 H10 SING N N 52 A1LVJ C01 H11 SING N N 53 A1LVJ C02 H12 SING N N 54 A1LVJ N03 H13 SING N N 55 A1LVJ C07 H14 SING N N 56 A1LVJ C07 H15 SING N N 57 A1LVJ C07 H16 SING N N 58 A1LVJ C14 H17 SING N N 59 A1LVJ C18 H19 SING N N 60 A1LVJ C18 H20 SING N N 61 A1LVJ C23 H21 SING N N 62 A1LVJ C27 H22 SING N N 63 A1LVJ C31 H23 SING N N 64 A1LVJ C32 H24 SING N N 65 A1LVJ C33 H25 SING N N 66 A1LVJ C35 H26 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LVJ InChI InChI 1.06 "InChI=1S/C27H24F3N7O2/c1-15(19-4-3-5-20(23(19)28)25(29)30)33-26-21-14-37(36-8-10-39-11-9-36)27(38)22(24(21)34-16(2)35-26)17-6-7-18(12-31)32-13-17/h3-7,13-15,25H,8-11H2,1-2H3,(H,33,34,35)/t15-/m1/s1" A1LVJ InChIKey InChI 1.06 HRMKBFIINYRRDO-OAHLLOKOSA-N A1LVJ SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC1=NC(=NC2=C(C(=O)N(C=C12)N3CCOCC3)c4ccc(nc4)C#N)C)c5cccc(C(F)F)c5F" A1LVJ SMILES CACTVS 3.385 "C[CH](NC1=NC(=NC2=C(C(=O)N(C=C12)N3CCOCC3)c4ccc(nc4)C#N)C)c5cccc(C(F)F)c5F" A1LVJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=NC2=C(C(=O)N(C=C2C(=N1)N[C@H](C)c3cccc(c3F)C(F)F)N4CCOCC4)c5ccc(nc5)C#N" A1LVJ SMILES "OpenEye OEToolkits" 2.0.7 "CC1=NC2=C(C(=O)N(C=C2C(=N1)NC(C)c3cccc(c3F)C(F)F)N4CCOCC4)c5ccc(nc5)C#N" # _pdbx_chem_comp_identifier.comp_id A1LVJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[4-[[(1~{R})-1-[3-[bis(fluoranyl)methyl]-2-fluoranyl-phenyl]ethyl]amino]-2-methyl-6-morpholin-4-yl-7-oxidanylidene-pyrido[4,3-d]pyrimidin-8-yl]pyridine-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LVJ "Create component" 2023-12-22 PDBJ A1LVJ "Initial release" 2024-08-14 RCSB #