data_A1LVO # _chem_comp.id A1LVO _chem_comp.name "1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-4-[[4-(trifluoromethyl)phenyl]methyl]-3~{H}-1,4-benzodiazepine-2,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H23 F3 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-27 _chem_comp.pdbx_modified_date 2024-12-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LVO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XIN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LVO C13 C1 C 0 1 N N N N N N 3.045 -3.415 81.786 3.329 -1.290 0.585 C13 A1LVO 1 A1LVO C17 C2 C 0 1 N N N N N N 6.253 -5.709 82.030 7.137 -1.878 0.263 C17 A1LVO 2 A1LVO C20 C3 C 0 1 N N N N N N 3.526 -5.532 83.264 4.791 -1.683 -1.459 C20 A1LVO 3 A1LVO C24 C4 C 0 1 N N N N N N -4.297 -3.712 83.623 -3.026 2.161 1.006 C24 A1LVO 4 A1LVO C26 C5 C 0 1 N N N N N N -0.693 0.028 86.179 1.608 4.813 -0.292 C26 A1LVO 5 A1LVO C28 C6 C 0 1 Y N N N N N -4.604 -3.161 80.974 -3.750 -0.205 1.385 C28 A1LVO 6 A1LVO C01 C7 C 0 1 Y N N N N N 1.905 -2.957 82.638 2.634 -0.013 0.327 C01 A1LVO 7 A1LVO C02 C8 C 0 1 Y N N N N N 2.290 -1.828 83.596 3.278 1.007 -0.383 C02 A1LVO 8 A1LVO C03 C9 C 0 1 Y N N N N N 1.173 -1.259 84.445 2.631 2.194 -0.619 C03 A1LVO 9 A1LVO C04 C10 C 0 1 Y N N N N N -0.236 -1.810 84.294 1.326 2.405 -0.157 C04 A1LVO 10 A1LVO C05 C11 C 0 1 Y N N N N N -0.688 -2.945 83.330 0.673 1.391 0.548 C05 A1LVO 11 A1LVO C06 C12 C 0 1 Y N N N N N 0.491 -3.520 82.463 1.335 0.180 0.785 C06 A1LVO 12 A1LVO C08 C13 C 0 1 N N N N N N -2.915 -1.266 85.529 -0.506 3.833 -0.804 C08 A1LVO 13 A1LVO C09 C14 C 0 1 N N N N N N -3.474 -2.304 84.715 -1.491 2.702 -0.926 C09 A1LVO 14 A1LVO C11 C15 C 0 1 N N N N N N -1.936 -3.383 83.269 -0.698 1.524 1.057 C11 A1LVO 15 A1LVO C12 C16 C 0 1 N N N N N N 0.371 -4.632 81.415 0.638 -0.919 1.544 C12 A1LVO 16 A1LVO C14 C17 C 0 1 N N N N N N 3.911 -4.591 82.137 4.653 -1.539 -0.005 C14 A1LVO 17 A1LVO C16 C18 C 0 1 N N N N N N 5.215 -4.792 81.410 5.759 -1.637 0.805 C16 A1LVO 18 A1LVO C18 C19 C 0 1 N N N N N N 6.023 -5.875 83.536 7.080 -2.518 -1.123 C18 A1LVO 19 A1LVO C19 C20 C 0 1 N N N N N N 4.626 -6.417 83.848 6.191 -1.664 -2.037 C19 A1LVO 20 A1LVO C27 C21 C 0 1 Y N N N N N -4.939 -3.904 82.266 -3.809 0.936 0.607 C27 A1LVO 21 A1LVO C29 C22 C 0 1 Y N N N N N -5.391 -3.531 79.710 -4.468 -1.329 1.020 C29 A1LVO 22 A1LVO C30 C23 C 0 1 Y N N N N N -6.464 -4.624 79.793 -5.245 -1.311 -0.124 C30 A1LVO 23 A1LVO C31 C24 C 0 1 Y N N N N N -6.774 -5.351 81.078 -5.304 -0.169 -0.901 C31 A1LVO 24 A1LVO C32 C25 C 0 1 Y N N N N N -6.002 -4.980 82.314 -4.586 0.954 -0.536 C32 A1LVO 25 A1LVO C33 C26 C 0 1 N N N N N N -7.286 -5.058 78.601 -6.027 -2.535 -0.523 C33 A1LVO 26 A1LVO F34 F1 F 0 1 N N N N N N -6.990 -4.237 77.543 -7.298 -2.487 0.060 F34 A1LVO 27 A1LVO F35 F2 F 0 1 N N N N N N -8.597 -4.962 78.960 -6.154 -2.575 -1.916 F35 A1LVO 28 A1LVO F36 F3 F 0 1 N N N N N N -7.013 -6.375 78.361 -5.356 -3.681 -0.083 F36 A1LVO 29 A1LVO N07 N1 N 0 1 N N N N N N -1.285 -1.000 85.365 0.753 3.631 -0.429 N07 A1LVO 30 A1LVO N10 N2 N 0 1 N N N N N N -3.081 -2.982 83.889 -1.696 2.109 0.396 N10 A1LVO 31 A1LVO O15 O1 O 0 1 N N N N N N 3.218 -2.741 80.818 2.809 -2.134 1.290 O15 A1LVO 32 A1LVO O21 O2 O 0 1 N N N N N N 5.478 -4.079 80.248 5.600 -1.513 2.131 O21 A1LVO 33 A1LVO O22 O3 O 0 1 N N N N N N 2.399 -5.579 83.644 3.818 -1.813 -2.172 O22 A1LVO 34 A1LVO O23 O4 O 0 1 N N N N N N -2.126 -4.263 82.515 -0.940 1.067 2.157 O23 A1LVO 35 A1LVO O25 O5 O 0 1 N N N N N N -3.564 -0.655 86.300 -0.871 4.961 -1.055 O25 A1LVO 36 A1LVO H1 H1 H 0 1 N N N N N N 6.193 -6.696 81.548 7.667 -0.928 0.197 H1 A1LVO 37 A1LVO H2 H2 H 0 1 N N N N N N 7.253 -5.281 81.866 7.677 -2.541 0.941 H2 A1LVO 38 A1LVO H3 H3 H 0 1 N N N N N N -5.067 -3.225 84.240 -3.549 3.054 0.663 H3 A1LVO 39 A1LVO H4 H4 H 0 1 N N N N N N -4.112 -4.728 84.001 -2.928 2.192 2.091 H4 A1LVO 40 A1LVO H5 H5 H 0 1 N N N N N N 0.384 0.091 85.965 1.033 5.707 -0.535 H5 A1LVO 41 A1LVO H6 H6 H 0 1 N N N N N N -1.169 0.994 85.953 1.971 4.882 0.733 H6 A1LVO 42 A1LVO H7 H7 H 0 1 N N N N N N -0.842 -0.215 87.242 2.455 4.730 -0.973 H7 A1LVO 43 A1LVO H8 H8 H 0 1 N N N N N N -3.838 -2.400 80.951 -3.140 -0.221 2.276 H8 A1LVO 44 A1LVO H9 H9 H 0 1 N N N N N N 3.302 -1.458 83.663 4.285 0.860 -0.746 H9 A1LVO 45 A1LVO H10 H10 H 0 1 N N N N N N 1.375 -0.468 85.152 3.135 2.976 -1.167 H10 A1LVO 46 A1LVO H12 H12 H 0 1 N N N N N N -3.848 -3.022 85.460 -2.439 3.084 -1.306 H12 A1LVO 47 A1LVO H13 H13 H 0 1 N N N N N N -4.325 -1.801 84.232 -1.099 1.948 -1.609 H13 A1LVO 48 A1LVO H14 H14 H 0 1 N N N N N N 0.534 -5.608 81.895 0.925 -0.873 2.594 H14 A1LVO 49 A1LVO H15 H15 H 0 1 N N N N N N -0.634 -4.607 80.967 -0.442 -0.793 1.456 H15 A1LVO 50 A1LVO H16 H16 H 0 1 N N N N N N 1.126 -4.479 80.630 0.925 -1.885 1.130 H16 A1LVO 51 A1LVO H17 H17 H 0 1 N N N N N N 6.772 -6.575 83.934 8.085 -2.573 -1.540 H17 A1LVO 52 A1LVO H18 H18 H 0 1 N N N N N N 6.141 -4.896 84.023 6.662 -3.522 -1.043 H18 A1LVO 53 A1LVO H19 H19 H 0 1 N N N N N N 4.500 -6.467 84.940 6.182 -2.085 -3.042 H19 A1LVO 54 A1LVO H20 H20 H 0 1 N N N N N N 4.533 -7.427 83.422 6.565 -0.641 -2.067 H20 A1LVO 55 A1LVO H21 H21 H 0 1 N N N N N N -5.192 -3.029 78.775 -4.422 -2.220 1.627 H21 A1LVO 56 A1LVO H22 H22 H 0 1 N N N N N N -7.532 -6.119 81.109 -5.911 -0.155 -1.795 H22 A1LVO 57 A1LVO H23 H23 H 0 1 N N N N N N -6.208 -5.487 83.245 -4.633 1.846 -1.143 H23 A1LVO 58 A1LVO H25 H25 H 0 1 N N N N N N 4.796 -3.431 80.112 4.705 -1.331 2.451 H25 A1LVO 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LVO C13 C01 SING N N 1 A1LVO C13 C14 SING N N 2 A1LVO C13 O15 DOUB N N 3 A1LVO C17 C16 SING N N 4 A1LVO C17 C18 SING N N 5 A1LVO C20 C14 SING N N 6 A1LVO C20 C19 SING N N 7 A1LVO C20 O22 DOUB N N 8 A1LVO C24 C27 SING N N 9 A1LVO C24 N10 SING N N 10 A1LVO C26 N07 SING N N 11 A1LVO C28 C27 DOUB Y N 12 A1LVO C28 C29 SING Y N 13 A1LVO C01 C02 DOUB Y N 14 A1LVO C01 C06 SING Y N 15 A1LVO C02 C03 SING Y N 16 A1LVO C03 C04 DOUB Y N 17 A1LVO C04 C05 SING Y N 18 A1LVO C05 C06 DOUB Y N 19 A1LVO C05 C11 SING N N 20 A1LVO C06 C12 SING N N 21 A1LVO C08 C09 SING N N 22 A1LVO C08 N07 SING N N 23 A1LVO C08 O25 DOUB N N 24 A1LVO C09 N10 SING N N 25 A1LVO C11 N10 SING N N 26 A1LVO C11 O23 DOUB N N 27 A1LVO C14 C16 DOUB N N 28 A1LVO C16 O21 SING N N 29 A1LVO C18 C19 SING N N 30 A1LVO C27 C32 SING Y N 31 A1LVO C29 C30 DOUB Y N 32 A1LVO C30 C31 SING Y N 33 A1LVO C30 C33 SING N N 34 A1LVO C31 C32 DOUB Y N 35 A1LVO C33 F34 SING N N 36 A1LVO C33 F35 SING N N 37 A1LVO C33 F36 SING N N 38 A1LVO C17 H1 SING N N 39 A1LVO C17 H2 SING N N 40 A1LVO C24 H3 SING N N 41 A1LVO C24 H4 SING N N 42 A1LVO C26 H5 SING N N 43 A1LVO C26 H6 SING N N 44 A1LVO C26 H7 SING N N 45 A1LVO C28 H8 SING N N 46 A1LVO C02 H9 SING N N 47 A1LVO C03 H10 SING N N 48 A1LVO C09 H12 SING N N 49 A1LVO C09 H13 SING N N 50 A1LVO C12 H14 SING N N 51 A1LVO C12 H15 SING N N 52 A1LVO C12 H16 SING N N 53 A1LVO C18 H17 SING N N 54 A1LVO C18 H18 SING N N 55 A1LVO C19 H19 SING N N 56 A1LVO C19 H20 SING N N 57 A1LVO C29 H21 SING N N 58 A1LVO C31 H22 SING N N 59 A1LVO C32 H23 SING N N 60 A1LVO O21 H25 SING N N 61 A1LVO N07 C04 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LVO InChI InChI 1.06 "InChI=1S/C26H23F3N2O5/c1-14-17(24(35)23-19(32)4-3-5-20(23)33)10-11-18-22(14)25(36)31(13-21(34)30(18)2)12-15-6-8-16(9-7-15)26(27,28)29/h6-11,32H,3-5,12-13H2,1-2H3" A1LVO InChIKey InChI 1.06 PJRNCTHLDJFKRG-UHFFFAOYSA-N A1LVO SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)CN(Cc2ccc(cc2)C(F)(F)F)C(=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" A1LVO SMILES CACTVS 3.385 "CN1C(=O)CN(Cc2ccc(cc2)C(F)(F)F)C(=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" A1LVO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)Cc3ccc(cc3)C(F)(F)F)C(=O)C4=C(CCCC4=O)O" A1LVO SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)Cc3ccc(cc3)C(F)(F)F)C(=O)C4=C(CCCC4=O)O" # _pdbx_chem_comp_identifier.comp_id A1LVO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-4-[[4-(trifluoromethyl)phenyl]methyl]-3~{H}-1,4-benzodiazepine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LVO "Create component" 2023-12-27 PDBJ A1LVO "Modify formula" 2024-04-23 PDBJ A1LVO "Modify linking type" 2024-04-23 PDBJ A1LVO "Modify name" 2024-04-23 PDBJ A1LVO "Initial release" 2024-12-25 RCSB #