data_A1LVP # _chem_comp.id A1LVP _chem_comp.name "1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-4-prop-2-enyl-3~{H}-1,4-benzodiazepine-2,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-27 _chem_comp.pdbx_modified_date 2024-12-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 382.410 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LVP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XII _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LVP C13 C1 C 0 1 N N N N N N 3.157 -3.316 82.427 -2.309 -1.040 0.200 C13 A1LVP 1 A1LVP C17 C2 C 0 1 N N N N N N 4.702 -6.363 84.473 -5.746 -0.234 -1.378 C17 A1LVP 2 A1LVP C20 C3 C 0 1 N N N N N N 5.314 -4.717 82.009 -4.137 0.576 0.916 C20 A1LVP 3 A1LVP C24 C4 C 0 1 N N N N N N -4.111 -3.687 83.657 4.928 -1.113 0.477 C24 A1LVP 4 A1LVP C26 C5 C 0 1 N N N N N N -0.758 -0.121 86.975 2.103 3.597 0.319 C26 A1LVP 5 A1LVP C28 C6 C 0 1 N N N N N N -4.203 -2.791 81.328 6.103 -2.729 -0.927 C28 A1LVP 6 A1LVP C01 C7 C 0 1 Y N N N N N 2.037 -2.839 83.319 -1.094 -0.207 0.111 C01 A1LVP 7 A1LVP C02 C8 C 0 1 Y N N N N N 2.400 -1.829 84.398 -1.185 1.129 -0.300 C02 A1LVP 8 A1LVP C03 C9 C 0 1 Y N N N N N 1.241 -1.315 85.246 -0.054 1.901 -0.378 C03 A1LVP 9 A1LVP C04 C10 C 0 1 Y N N N N N -0.194 -1.803 84.996 1.202 1.374 -0.053 C04 A1LVP 10 A1LVP C05 C11 C 0 1 Y N N N N N -0.596 -2.786 83.933 1.304 0.041 0.352 C05 A1LVP 11 A1LVP C06 C12 C 0 1 Y N N N N N 0.618 -3.310 83.061 0.146 -0.743 0.440 C06 A1LVP 12 A1LVP C08 C13 C 0 1 N N N N N N -2.974 -1.318 86.075 3.480 1.900 -0.638 C08 A1LVP 13 A1LVP C09 C14 C 0 1 N N N N N N -3.585 -2.315 85.137 3.802 0.506 -1.102 C09 A1LVP 14 A1LVP C11 C15 C 0 1 N N N N N N -1.836 -3.199 83.743 2.580 -0.596 0.698 C11 A1LVP 15 A1LVP C12 C16 C 0 1 N N N N N N 0.545 -4.314 81.896 0.245 -2.178 0.889 C12 A1LVP 16 A1LVP C14 C17 C 0 1 N N N N N N 4.039 -4.485 82.783 -3.633 -0.435 -0.016 C14 A1LVP 17 A1LVP C16 C18 C 0 1 N N N N N N 3.638 -5.450 83.879 -4.394 -0.820 -1.094 C16 A1LVP 18 A1LVP C18 C19 C 0 1 N N N N N N 6.125 -5.987 84.062 -6.360 0.368 -0.115 C18 A1LVP 19 A1LVP C19 C20 C 0 1 N N N N N N 6.308 -5.721 82.565 -5.367 1.359 0.507 C19 A1LVP 20 A1LVP C27 C21 C 0 1 N N N N N N -4.804 -2.989 82.484 5.023 -2.431 -0.248 C27 A1LVP 21 A1LVP N07 N1 N 0 1 N N N N N N -1.304 -1.083 86.041 2.285 2.222 -0.152 N07 A1LVP 22 A1LVP N10 N2 N 0 1 N N N N N N -3.052 -2.907 84.278 3.723 -0.402 0.043 N10 A1LVP 23 A1LVP O15 O1 O 0 1 N N N N N N 3.333 -2.688 81.425 -2.216 -2.227 0.448 O15 A1LVP 24 A1LVP O21 O2 O 0 1 N N N N N N 2.320 -5.546 84.304 -3.911 -1.756 -1.924 O21 A1LVP 25 A1LVP O22 O3 O 0 1 N N N N N N 5.566 -4.119 81.013 -3.588 0.778 1.980 O22 A1LVP 26 A1LVP O23 O4 O 0 1 N N N N N N -1.963 -3.979 82.879 2.595 -1.354 1.650 O23 A1LVP 27 A1LVP O25 O5 O 0 1 N N N N N N -3.640 -0.727 86.858 4.336 2.757 -0.711 O25 A1LVP 28 A1LVP H1 H1 H 0 1 N N N N N N 4.631 -6.313 85.570 -5.647 0.546 -2.133 H1 A1LVP 29 A1LVP H2 H2 H 0 1 N N N N N N 4.504 -7.392 84.139 -6.403 -1.017 -1.757 H2 A1LVP 30 A1LVP H3 H3 H 0 1 N N N N N N -4.869 -3.909 84.422 4.877 -1.292 1.551 H3 A1LVP 31 A1LVP H4 H4 H 0 1 N N N N N N -3.675 -4.628 83.289 5.807 -0.510 0.251 H4 A1LVP 32 A1LVP H5 H5 H 0 1 N N N N N N -1.567 0.282 87.602 2.364 3.657 1.375 H5 A1LVP 33 A1LVP H6 H6 H 0 1 N N N N N N -0.010 -0.614 87.613 2.747 4.265 -0.253 H6 A1LVP 34 A1LVP H7 H7 H 0 1 N N N N N N -0.282 0.700 86.419 1.063 3.892 0.184 H7 A1LVP 35 A1LVP H8 H8 H 0 1 N N N N N N -3.186 -3.126 81.184 6.171 -3.673 -1.446 H8 A1LVP 36 A1LVP H9 H9 H 0 1 N N N N N N -4.727 -2.294 80.525 6.926 -2.030 -0.966 H9 A1LVP 37 A1LVP H10 H10 H 0 1 N N N N N N 3.416 -1.497 84.554 -2.146 1.551 -0.555 H10 A1LVP 38 A1LVP H11 H11 H 0 1 N N N N N N 1.432 -0.599 86.032 -0.133 2.931 -0.696 H11 A1LVP 39 A1LVP H12 H12 H 0 1 N N N N N N -4.399 -1.769 84.638 3.084 0.199 -1.862 H12 A1LVP 40 A1LVP H13 H13 H 0 1 N N N N N N -4.011 -3.091 85.790 4.809 0.483 -1.520 H13 A1LVP 41 A1LVP H14 H14 H 0 1 N N N N N N 0.667 -5.336 82.284 0.271 -2.831 0.016 H14 A1LVP 42 A1LVP H15 H15 H 0 1 N N N N N N -0.431 -4.226 81.396 1.156 -2.315 1.472 H15 A1LVP 43 A1LVP H16 H16 H 0 1 N N N N N N 1.347 -4.098 81.175 -0.620 -2.428 1.503 H16 A1LVP 44 A1LVP H19 H19 H 0 1 N N N N N N 6.794 -6.812 84.348 -7.282 0.889 -0.370 H19 A1LVP 45 A1LVP H20 H20 H 0 1 N N N N N N 6.411 -5.077 84.609 -6.576 -0.427 0.599 H20 A1LVP 46 A1LVP H21 H21 H 0 1 N N N N N N 6.185 -6.671 82.024 -5.813 1.831 1.382 H21 A1LVP 47 A1LVP H22 H22 H 0 1 N N N N N N 7.324 -5.334 82.401 -5.095 2.119 -0.226 H22 A1LVP 48 A1LVP H23 H23 H 0 1 N N N N N N -5.821 -2.647 82.608 4.200 -3.129 -0.208 H23 A1LVP 49 A1LVP H24 H24 H 0 1 N N N N N N 2.256 -6.197 84.993 -3.013 -2.073 -1.753 H24 A1LVP 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LVP O22 C20 DOUB N N 1 A1LVP C28 C27 DOUB N N 2 A1LVP O15 C13 DOUB N N 3 A1LVP C12 C06 SING N N 4 A1LVP C20 C19 SING N N 5 A1LVP C20 C14 SING N N 6 A1LVP C13 C14 SING N N 7 A1LVP C13 C01 SING N N 8 A1LVP C27 C24 SING N N 9 A1LVP C19 C18 SING N N 10 A1LVP C14 C16 DOUB N N 11 A1LVP O23 C11 DOUB N N 12 A1LVP C06 C01 DOUB Y N 13 A1LVP C06 C05 SING Y N 14 A1LVP C01 C02 SING Y N 15 A1LVP C24 N10 SING N N 16 A1LVP C11 C05 SING N N 17 A1LVP C11 N10 SING N N 18 A1LVP C16 O21 SING N N 19 A1LVP C16 C17 SING N N 20 A1LVP C05 C04 DOUB Y N 21 A1LVP C18 C17 SING N N 22 A1LVP N10 C09 SING N N 23 A1LVP C02 C03 DOUB Y N 24 A1LVP C04 C03 SING Y N 25 A1LVP C04 N07 SING N N 26 A1LVP C09 C08 SING N N 27 A1LVP N07 C08 SING N N 28 A1LVP N07 C26 SING N N 29 A1LVP C08 O25 DOUB N N 30 A1LVP C17 H1 SING N N 31 A1LVP C17 H2 SING N N 32 A1LVP C24 H3 SING N N 33 A1LVP C24 H4 SING N N 34 A1LVP C26 H5 SING N N 35 A1LVP C26 H6 SING N N 36 A1LVP C26 H7 SING N N 37 A1LVP C28 H8 SING N N 38 A1LVP C28 H9 SING N N 39 A1LVP C02 H10 SING N N 40 A1LVP C03 H11 SING N N 41 A1LVP C09 H12 SING N N 42 A1LVP C09 H13 SING N N 43 A1LVP C12 H14 SING N N 44 A1LVP C12 H15 SING N N 45 A1LVP C12 H16 SING N N 46 A1LVP C18 H19 SING N N 47 A1LVP C18 H20 SING N N 48 A1LVP C19 H21 SING N N 49 A1LVP C19 H22 SING N N 50 A1LVP C27 H23 SING N N 51 A1LVP O21 H24 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LVP InChI InChI 1.06 "InChI=1S/C21H22N2O5/c1-4-10-23-11-17(26)22(3)14-9-8-13(12(2)18(14)21(23)28)20(27)19-15(24)6-5-7-16(19)25/h4,8-9,24H,1,5-7,10-11H2,2-3H3" A1LVP InChIKey InChI 1.06 NIWCIBOQMVCWFM-UHFFFAOYSA-N A1LVP SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)CN(CC=C)C(=O)c2c(C)c(ccc12)C(=O)C3=C(O)CCCC3=O" A1LVP SMILES CACTVS 3.385 "CN1C(=O)CN(CC=C)C(=O)c2c(C)c(ccc12)C(=O)C3=C(O)CCCC3=O" A1LVP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)CC=C)C(=O)C3=C(CCCC3=O)O" A1LVP SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)CC=C)C(=O)C3=C(CCCC3=O)O" # _pdbx_chem_comp_identifier.comp_id A1LVP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-4-prop-2-enyl-3~{H}-1,4-benzodiazepine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LVP "Create component" 2023-12-27 PDBJ A1LVP "Modify formula" 2024-04-22 PDBJ A1LVP "Modify linking type" 2024-04-22 PDBJ A1LVP "Modify name" 2024-04-22 PDBJ A1LVP "Initial release" 2024-12-25 RCSB #