data_A1LW1
#
_chem_comp.id A1LW1
_chem_comp.name "(3~{S})-~{N}-[(2~{S})-6-azanyl-1-(2,2-diphenylethylamino)-1-oxidanylidene-hexan-2-yl]-2-(4-oxidanylidene-4-phenyl-butanoyl)-3,4-dihydro-1~{H}-isoquinoline-3-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H44 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-01-25
_chem_comp.pdbx_modified_date 2025-02-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 644.802
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1LW1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8XYI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1LW1 N3 N1 N 0 1 N N N N N N 134.659 117.745 88.379 3.680 1.435 -0.051 N3 A1LW1 1
A1LW1 C4 C1 C 0 1 N N N N N N 135.507 116.642 87.915 4.998 1.799 -0.581 C4 A1LW1 2
A1LW1 C5 C2 C 0 1 Y N N N N N 135.972 116.772 86.486 4.837 2.802 -1.696 C5 A1LW1 3
A1LW1 C6 C3 C 0 1 Y N N N N N 136.516 115.669 85.831 5.950 3.087 -2.476 C6 A1LW1 4
A1LW1 C7 C4 C 0 1 Y N N N N N 136.961 115.770 84.525 5.868 4.001 -3.506 C7 A1LW1 5
A1LW1 C8 C5 C 0 1 Y N N N N N 136.870 116.969 83.857 4.668 4.638 -3.763 C8 A1LW1 6
A1LW1 C10 C6 C 0 1 Y N N N N N 135.879 117.993 85.806 3.640 3.430 -1.956 C10 A1LW1 7
A1LW1 C13 C7 C 0 1 N N N N N N 134.002 116.505 90.393 4.327 -0.951 -0.133 C13 A1LW1 8
A1LW1 C15 C8 C 0 1 N N N N N N 133.082 114.236 89.836 4.691 -3.404 -0.081 C15 A1LW1 9
A1LW1 C17 C9 C 0 1 Y N N N N N 132.210 113.433 90.740 4.341 -4.804 0.204 C17 A1LW1 10
A1LW1 C20 C10 C 0 1 Y N N N N N 130.553 111.904 92.374 3.681 -7.441 0.739 C20 A1LW1 11
A1LW1 C21 C11 C 0 1 Y N N N N N 131.338 111.293 91.419 2.787 -6.431 1.050 C21 A1LW1 12
A1LW1 C22 C12 C 0 1 Y N N N N N 132.164 112.049 90.604 3.108 -5.116 0.786 C22 A1LW1 13
A1LW1 C26 C13 C 0 1 N N S N N N 131.274 116.844 86.074 -0.936 1.594 0.819 C26 A1LW1 14
A1LW1 C28 C14 C 0 1 N N N N N N 131.768 114.908 84.474 -0.501 2.787 2.970 C28 A1LW1 15
A1LW1 C1 C15 C 0 1 N N N N N N 135.300 119.198 86.502 2.387 3.158 -1.165 C1 A1LW1 16
A1LW1 C11 C16 C 0 1 N N N N N N 134.262 117.807 89.669 3.359 0.152 0.209 C11 A1LW1 17
A1LW1 C14 C17 C 0 1 N N N N N N 132.871 115.727 89.753 3.723 -2.300 0.262 C14 A1LW1 18
A1LW1 C18 C18 C 0 1 Y N N N N N 131.414 114.040 91.708 5.236 -5.831 -0.113 C18 A1LW1 19
A1LW1 C19 C19 C 0 1 Y N N N N N 130.591 113.275 92.517 4.901 -7.141 0.157 C19 A1LW1 20
A1LW1 C2 C20 C 0 1 N N S N N N 134.203 118.823 87.490 2.723 2.528 0.191 C2 A1LW1 21
A1LW1 C23 C21 C 0 1 N N N N N N 132.893 118.519 86.764 1.471 1.978 0.823 C23 A1LW1 22
A1LW1 C27 C22 C 0 1 N N N N N N 131.198 115.338 85.821 -1.492 2.611 1.818 C27 A1LW1 23
A1LW1 C29 C23 C 0 1 N N N N N N 133.251 115.180 84.310 -1.058 3.804 3.969 C29 A1LW1 24
A1LW1 C30 C24 C 0 1 N N N N N N 133.796 114.661 83.000 -0.067 3.981 5.122 C30 A1LW1 25
A1LW1 C32 C25 C 0 1 N N N N N N 130.167 117.289 87.030 -1.963 1.328 -0.251 C32 A1LW1 26
A1LW1 C35 C26 C 0 1 N N N N N N 129.630 117.892 89.364 -4.168 0.571 -0.958 C35 A1LW1 27
A1LW1 C36 C27 C 0 1 N N N N N N 128.264 117.197 89.372 -5.440 0.013 -0.317 C36 A1LW1 28
A1LW1 C37 C28 C 0 1 Y N N N N N 127.549 117.527 90.674 -6.509 -0.138 -1.369 C37 A1LW1 29
A1LW1 C38 C29 C 0 1 Y N N N N N 127.002 118.786 90.882 -6.180 -0.612 -2.625 C38 A1LW1 30
A1LW1 C39 C30 C 0 1 Y N N N N N 126.358 119.089 92.069 -7.160 -0.751 -3.590 C39 A1LW1 31
A1LW1 C40 C31 C 0 1 Y N N N N N 126.253 118.141 93.063 -8.469 -0.415 -3.299 C40 A1LW1 32
A1LW1 C41 C32 C 0 1 Y N N N N N 126.792 116.887 92.871 -8.798 0.058 -2.042 C41 A1LW1 33
A1LW1 C42 C33 C 0 1 Y N N N N N 127.437 116.580 91.685 -7.819 0.192 -1.076 C42 A1LW1 34
A1LW1 C43 C34 C 0 1 Y N N N N N 128.233 115.701 89.086 -5.145 -1.332 0.296 C43 A1LW1 35
A1LW1 C44 C35 C 0 1 Y N N N N N 127.036 115.081 88.753 -4.422 -2.272 -0.414 C44 A1LW1 36
A1LW1 C45 C36 C 0 1 Y N N N N N 126.991 113.720 88.506 -4.147 -3.503 0.150 C45 A1LW1 37
A1LW1 C46 C37 C 0 1 Y N N N N N 128.138 112.961 88.589 -4.595 -3.795 1.424 C46 A1LW1 38
A1LW1 C47 C38 C 0 1 Y N N N N N 129.332 113.563 88.919 -5.317 -2.855 2.135 C47 A1LW1 39
A1LW1 C48 C39 C 0 1 Y N N N N N 129.381 114.924 89.167 -5.593 -1.624 1.571 C48 A1LW1 40
A1LW1 C9 C40 C 0 1 Y N N N N N 136.332 118.075 84.492 3.561 4.353 -2.991 C9 A1LW1 41
A1LW1 N25 N2 N 0 1 N N N N N N 132.568 117.231 86.611 0.282 2.128 0.205 N25 A1LW1 42
A1LW1 N31 N3 N 0 1 N N N N N N 133.104 115.274 81.839 -0.601 4.957 6.081 N31 A1LW1 43
A1LW1 N34 N4 N 0 1 N N N N N N 130.529 117.455 88.304 -3.170 0.830 0.082 N34 A1LW1 44
A1LW1 O12 O1 O 0 1 N N N N N N 134.115 118.879 90.233 2.292 -0.115 0.720 O12 A1LW1 45
A1LW1 O16 O2 O 0 1 N N N N N N 133.949 113.701 89.169 5.758 -3.137 -0.590 O16 A1LW1 46
A1LW1 O24 O3 O 0 1 N N N N N N 132.192 119.435 86.346 1.532 1.400 1.887 O24 A1LW1 47
A1LW1 O33 O4 O 0 1 N N N N N N 129.024 117.473 86.624 -1.703 1.561 -1.413 O33 A1LW1 48
A1LW1 H1 H1 H 0 1 N N N N N N 134.936 115.707 88.007 5.601 2.236 0.215 H1 A1LW1 49
A1LW1 H2 H2 H 0 1 N N N N N N 136.395 116.595 88.563 5.494 0.908 -0.964 H2 A1LW1 50
A1LW1 H3 H3 H 0 1 N N N N N N 136.591 114.724 86.349 6.887 2.589 -2.275 H3 A1LW1 51
A1LW1 H4 H4 H 0 1 N N N N N N 137.380 114.907 84.030 6.737 4.217 -4.110 H4 A1LW1 52
A1LW1 H5 H5 H 0 1 N N N N N N 137.218 117.047 82.838 4.598 5.358 -4.565 H5 A1LW1 53
A1LW1 H6 H6 H 0 1 N N N N N N 134.916 115.893 90.366 4.524 -0.942 -1.205 H6 A1LW1 54
A1LW1 H7 H7 H 0 1 N N N N N N 133.738 116.724 91.438 5.260 -0.798 0.409 H7 A1LW1 55
A1LW1 H8 H8 H 0 1 N N N N N N 129.911 111.311 93.008 3.424 -8.469 0.947 H8 A1LW1 56
A1LW1 H9 H9 H 0 1 N N N N N N 131.309 110.219 91.306 1.838 -6.674 1.504 H9 A1LW1 57
A1LW1 H10 H10 H 0 1 N N N N N N 132.776 111.562 89.859 2.410 -4.330 1.030 H10 A1LW1 58
A1LW1 H11 H11 H 0 1 N N N N N N 131.119 117.357 85.114 -0.703 0.664 1.338 H11 A1LW1 59
A1LW1 H12 H12 H 0 1 N N N N N N 131.229 115.449 83.683 -0.352 1.831 3.471 H12 A1LW1 60
A1LW1 H13 H13 H 0 1 N N N N N N 131.601 113.827 84.358 0.451 3.146 2.580 H13 A1LW1 61
A1LW1 H14 H14 H 0 1 N N N N N N 136.105 119.713 87.046 1.856 4.096 -1.001 H14 A1LW1 62
A1LW1 H15 H15 H 0 1 N N N N N N 134.878 119.875 85.745 1.747 2.480 -1.730 H15 A1LW1 63
A1LW1 H16 H16 H 0 1 N N N N N N 132.798 116.015 88.694 3.526 -2.310 1.334 H16 A1LW1 64
A1LW1 H17 H17 H 0 1 N N N N N N 131.932 115.980 90.267 2.790 -2.454 -0.281 H17 A1LW1 65
A1LW1 H18 H18 H 0 1 N N N N N N 131.439 115.113 91.828 6.188 -5.598 -0.567 H18 A1LW1 66
A1LW1 H19 H19 H 0 1 N N N N N N 129.976 113.755 93.264 5.593 -7.935 -0.083 H19 A1LW1 67
A1LW1 H20 H20 H 0 1 N N N N N N 134.021 119.710 88.114 3.169 3.277 0.846 H20 A1LW1 68
A1LW1 H21 H21 H 0 1 N N N N N N 130.142 115.033 85.864 -1.641 3.567 1.317 H21 A1LW1 69
A1LW1 H22 H22 H 0 1 N N N N N N 131.760 114.825 86.615 -2.444 2.252 2.209 H22 A1LW1 70
A1LW1 H23 H23 H 0 1 N N N N N N 133.792 114.692 85.134 -1.207 4.761 3.469 H23 A1LW1 71
A1LW1 H24 H24 H 0 1 N N N N N N 133.417 116.267 84.355 -2.010 3.446 4.360 H24 A1LW1 72
A1LW1 H25 H25 H 0 1 N N N N N N 133.658 113.570 82.963 0.083 3.024 5.623 H25 A1LW1 73
A1LW1 H26 H26 H 0 1 N N N N N N 134.869 114.897 82.941 0.885 4.339 4.731 H26 A1LW1 74
A1LW1 H27 H27 H 0 1 N N N N N N 130.119 117.698 90.330 -3.772 -0.154 -1.670 H27 A1LW1 75
A1LW1 H28 H28 H 0 1 N N N N N N 129.464 118.973 89.248 -4.401 1.500 -1.478 H28 A1LW1 76
A1LW1 H29 H29 H 0 1 N N N N N N 127.677 117.673 88.572 -5.787 0.697 0.458 H29 A1LW1 77
A1LW1 H30 H30 H 0 1 N N N N N N 127.080 119.537 90.110 -5.157 -0.874 -2.853 H30 A1LW1 78
A1LW1 H31 H31 H 0 1 N N N N N N 125.936 120.072 92.217 -6.903 -1.120 -4.572 H31 A1LW1 79
A1LW1 H32 H32 H 0 1 N N N N N N 125.750 118.379 93.989 -9.234 -0.523 -4.053 H32 A1LW1 80
A1LW1 H33 H33 H 0 1 N N N N N N 126.711 116.142 93.648 -9.821 0.320 -1.815 H33 A1LW1 81
A1LW1 H34 H34 H 0 1 N N N N N N 127.857 115.595 91.544 -8.076 0.558 -0.093 H34 A1LW1 82
A1LW1 H35 H35 H 0 1 N N N N N N 126.131 115.667 88.686 -4.072 -2.044 -1.410 H35 A1LW1 83
A1LW1 H36 H36 H 0 1 N N N N N N 126.053 113.251 88.247 -3.582 -4.238 -0.406 H36 A1LW1 84
A1LW1 H37 H37 H 0 1 N N N N N N 128.101 111.899 88.396 -4.380 -4.758 1.865 H37 A1LW1 85
A1LW1 H38 H38 H 0 1 N N N N N N 130.233 112.971 88.984 -5.667 -3.084 3.131 H38 A1LW1 86
A1LW1 H39 H39 H 0 1 N N N N N N 130.322 115.386 89.426 -6.155 -0.889 2.128 H39 A1LW1 87
A1LW1 H40 H40 H 0 1 N N N N N N 136.263 119.013 83.962 2.625 4.853 -3.193 H40 A1LW1 88
A1LW1 H41 H41 H 0 1 N N N N N N 133.225 116.523 86.870 0.234 2.591 -0.646 H41 A1LW1 89
A1LW1 H42 H42 H 0 1 N N N N N N 133.488 114.909 80.991 -1.514 4.680 6.410 H42 A1LW1 90
A1LW1 H44 H44 H 0 1 N N N N N N 132.128 115.060 81.882 0.035 5.092 6.852 H44 A1LW1 91
A1LW1 H45 H45 H 0 1 N N N N N N 131.481 117.267 88.547 -3.378 0.643 1.011 H45 A1LW1 92
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1LW1 N31 C30 SING N N 1
A1LW1 C30 C29 SING N N 2
A1LW1 C8 C9 DOUB Y N 3
A1LW1 C8 C7 SING Y N 4
A1LW1 C29 C28 SING N N 5
A1LW1 C28 C27 SING N N 6
A1LW1 C9 C10 SING Y N 7
A1LW1 C7 C6 DOUB Y N 8
A1LW1 C10 C5 DOUB Y N 9
A1LW1 C10 C1 SING N N 10
A1LW1 C27 C26 SING N N 11
A1LW1 C6 C5 SING Y N 12
A1LW1 C26 N25 SING N N 13
A1LW1 C26 C32 SING N N 14
A1LW1 O24 C23 DOUB N N 15
A1LW1 C5 C4 SING N N 16
A1LW1 C1 C2 SING N N 17
A1LW1 N25 C23 SING N N 18
A1LW1 O33 C32 DOUB N N 19
A1LW1 C23 C2 SING N N 20
A1LW1 C32 N34 SING N N 21
A1LW1 C2 N3 SING N N 22
A1LW1 C4 N3 SING N N 23
A1LW1 N34 C35 SING N N 24
A1LW1 N3 C11 SING N N 25
A1LW1 C45 C46 DOUB Y N 26
A1LW1 C45 C44 SING Y N 27
A1LW1 C46 C47 SING Y N 28
A1LW1 C44 C43 DOUB Y N 29
A1LW1 C47 C48 DOUB Y N 30
A1LW1 C43 C48 SING Y N 31
A1LW1 C43 C36 SING N N 32
A1LW1 O16 C15 DOUB N N 33
A1LW1 C35 C36 SING N N 34
A1LW1 C36 C37 SING N N 35
A1LW1 C11 O12 DOUB N N 36
A1LW1 C11 C13 SING N N 37
A1LW1 C14 C15 SING N N 38
A1LW1 C14 C13 SING N N 39
A1LW1 C15 C17 SING N N 40
A1LW1 C22 C17 DOUB Y N 41
A1LW1 C22 C21 SING Y N 42
A1LW1 C37 C38 DOUB Y N 43
A1LW1 C37 C42 SING Y N 44
A1LW1 C17 C18 SING Y N 45
A1LW1 C38 C39 SING Y N 46
A1LW1 C21 C20 DOUB Y N 47
A1LW1 C42 C41 DOUB Y N 48
A1LW1 C18 C19 DOUB Y N 49
A1LW1 C39 C40 DOUB Y N 50
A1LW1 C20 C19 SING Y N 51
A1LW1 C41 C40 SING Y N 52
A1LW1 C4 H1 SING N N 53
A1LW1 C4 H2 SING N N 54
A1LW1 C6 H3 SING N N 55
A1LW1 C7 H4 SING N N 56
A1LW1 C8 H5 SING N N 57
A1LW1 C13 H6 SING N N 58
A1LW1 C13 H7 SING N N 59
A1LW1 C20 H8 SING N N 60
A1LW1 C21 H9 SING N N 61
A1LW1 C22 H10 SING N N 62
A1LW1 C26 H11 SING N N 63
A1LW1 C28 H12 SING N N 64
A1LW1 C28 H13 SING N N 65
A1LW1 C1 H14 SING N N 66
A1LW1 C1 H15 SING N N 67
A1LW1 C14 H16 SING N N 68
A1LW1 C14 H17 SING N N 69
A1LW1 C18 H18 SING N N 70
A1LW1 C19 H19 SING N N 71
A1LW1 C2 H20 SING N N 72
A1LW1 C27 H21 SING N N 73
A1LW1 C27 H22 SING N N 74
A1LW1 C29 H23 SING N N 75
A1LW1 C29 H24 SING N N 76
A1LW1 C30 H25 SING N N 77
A1LW1 C30 H26 SING N N 78
A1LW1 C35 H27 SING N N 79
A1LW1 C35 H28 SING N N 80
A1LW1 C36 H29 SING N N 81
A1LW1 C38 H30 SING N N 82
A1LW1 C39 H31 SING N N 83
A1LW1 C40 H32 SING N N 84
A1LW1 C41 H33 SING N N 85
A1LW1 C42 H34 SING N N 86
A1LW1 C44 H35 SING N N 87
A1LW1 C45 H36 SING N N 88
A1LW1 C46 H37 SING N N 89
A1LW1 C47 H38 SING N N 90
A1LW1 C48 H39 SING N N 91
A1LW1 C9 H40 SING N N 92
A1LW1 N25 H41 SING N N 93
A1LW1 N31 H42 SING N N 94
A1LW1 N31 H44 SING N N 95
A1LW1 N34 H45 SING N N 96
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1LW1 InChI InChI 1.06 "InChI=1S/C40H44N4O4/c41-25-13-12-22-35(39(47)42-27-34(29-14-4-1-5-15-29)30-16-6-2-7-17-30)43-40(48)36-26-32-20-10-11-21-33(32)28-44(36)38(46)24-23-37(45)31-18-8-3-9-19-31/h1-11,14-21,34-36H,12-13,22-28,41H2,(H,42,47)(H,43,48)/t35-,36-/m0/s1"
A1LW1 InChIKey InChI 1.06 LEINOXRFIYQSFV-ZPGRZCPFSA-N
A1LW1 SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@H](NC(=O)[C@@H]1Cc2ccccc2CN1C(=O)CCC(=O)c3ccccc3)C(=O)NCC(c4ccccc4)c5ccccc5"
A1LW1 SMILES CACTVS 3.385 "NCCCC[CH](NC(=O)[CH]1Cc2ccccc2CN1C(=O)CCC(=O)c3ccccc3)C(=O)NCC(c4ccccc4)c5ccccc5"
A1LW1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(CNC(=O)[C@H](CCCCN)NC(=O)[C@@H]2Cc3ccccc3CN2C(=O)CCC(=O)c4ccccc4)c5ccccc5"
A1LW1 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(CNC(=O)C(CCCCN)NC(=O)C2Cc3ccccc3CN2C(=O)CCC(=O)c4ccccc4)c5ccccc5"
#
_pdbx_chem_comp_identifier.comp_id A1LW1
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{S})-~{N}-[(2~{S})-6-azanyl-1-(2,2-diphenylethylamino)-1-oxidanylidene-hexan-2-yl]-2-(4-oxidanylidene-4-phenyl-butanoyl)-3,4-dihydro-1~{H}-isoquinoline-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1LW1 "Create component" 2024-01-25 PDBJ
A1LW1 "Initial release" 2025-02-26 RCSB
#