data_A1LWR # _chem_comp.id A1LWR _chem_comp.name "1,4-dimethyl-3-[(2-nitrophenyl)methyl]-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H21 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-17 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 435.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LWR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XR0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LWR C13 C1 C 0 1 N N N N N N -3.419 -4.479 88.856 2.579 -0.230 1.299 C13 A1LWR 1 A1LWR C15 C2 C 0 1 Y N N N N N -4.605 -2.667 87.395 2.595 -2.347 -0.037 C15 A1LWR 2 A1LWR C17 C3 C 0 1 Y N N N N N -6.230 -3.407 85.443 4.544 -3.051 -1.236 C17 A1LWR 3 A1LWR C20 C4 C 0 1 N N N N N N 2.020 -3.351 86.810 -2.938 -0.793 0.508 C20 A1LWR 4 A1LWR C21 C5 C 0 1 N N N N N N 2.893 -4.569 87.131 -4.327 -0.457 0.157 C21 A1LWR 5 A1LWR C24 C6 C 0 1 N N N N N N 5.124 -5.873 86.750 -6.418 -0.920 -1.175 C24 A1LWR 6 A1LWR C26 C7 C 0 1 N N N N N N 3.738 -6.453 88.770 -6.304 1.155 0.211 C26 A1LWR 7 A1LWR C01 C8 C 0 1 Y N N N N N 1.044 -2.831 87.851 -1.839 0.115 0.124 C01 A1LWR 8 A1LWR C02 C9 C 0 1 Y N N N N N 1.428 -1.651 88.742 -2.099 1.224 -0.688 C02 A1LWR 9 A1LWR C03 C10 C 0 1 Y N N N N N 0.435 -1.136 89.782 -1.077 2.072 -1.048 C03 A1LWR 10 A1LWR C04 C11 C 0 1 Y N N N N N -0.943 -1.822 89.912 0.218 1.828 -0.606 C04 A1LWR 11 A1LWR C05 C12 C 0 1 Y N N N N N -1.316 -2.968 89.041 0.485 0.720 0.206 C05 A1LWR 12 A1LWR C06 C13 C 0 1 Y N N N N N -0.321 -3.496 87.983 -0.540 -0.131 0.574 C06 A1LWR 13 A1LWR C07 C14 C 0 1 N N N N N N -0.654 -4.670 87.054 -0.257 -1.321 1.454 C07 A1LWR 14 A1LWR N08 N1 N 0 1 N N N N N N -2.059 -1.538 90.807 1.426 2.485 -0.797 N08 A1LWR 15 A1LWR C09 C15 C 0 1 N N N N N N -3.132 -2.501 90.507 2.387 1.814 -0.135 C09 A1LWR 16 A1LWR N10 N2 N 0 1 N N N N N N -2.666 -3.376 89.416 1.851 0.743 0.481 N10 A1LWR 17 A1LWR O11 O1 O 0 1 N N N N N N -4.187 -2.559 91.043 3.562 2.128 -0.098 O11 A1LWR 18 A1LWR C12 C16 C 0 1 N N N N N N -2.088 -0.492 91.808 1.622 3.703 -1.587 C12 A1LWR 19 A1LWR C14 C17 C 0 1 Y N N N N N -4.344 -4.133 87.707 3.271 -1.223 0.401 C14 A1LWR 20 A1LWR C16 C18 C 0 1 Y N N N N N -5.555 -2.312 86.255 3.231 -3.261 -0.855 C16 A1LWR 21 A1LWR C18 C19 C 0 1 Y N N N N N -5.970 -4.869 85.771 5.216 -1.922 -0.808 C18 A1LWR 22 A1LWR C19 C20 C 0 1 Y N N N N N -5.022 -5.244 86.900 4.581 -1.011 0.016 C19 A1LWR 23 A1LWR O22 O2 O 0 1 N N N N N N 2.100 -2.800 85.762 -2.696 -1.819 1.116 O22 A1LWR 24 A1LWR C23 C21 C 0 1 N N N N N N 4.081 -4.888 86.238 -5.005 -1.218 -0.765 C23 A1LWR 25 A1LWR C25 C22 C 0 1 N N N N N N 5.104 -5.991 88.270 -7.136 -0.092 -0.111 C25 A1LWR 26 A1LWR C27 C23 C 0 1 N N N N N N 2.630 -5.506 88.317 -4.988 0.686 0.796 C27 A1LWR 27 A1LWR O28 O3 O 0 1 N N N N N N 4.318 -4.137 85.084 -4.380 -2.267 -1.320 O28 A1LWR 28 A1LWR O29 O4 O 0 1 N N N N N N 1.591 -5.537 88.886 -4.498 1.237 1.760 O29 A1LWR 29 A1LWR N30 N3 N 1 1 N N N N N N -4.835 -6.666 87.143 5.300 0.199 0.474 N30 A1LWR 30 A1LWR O31 O5 O 0 1 N N N N N N -3.937 -7.105 87.754 6.380 0.486 -0.011 O31 A1LWR 31 A1LWR O32 O6 O -1 1 N N N N N N -5.777 -7.556 86.604 4.813 0.907 1.337 O32 A1LWR 32 A1LWR H1 H1 H 0 1 N N N N N N -4.030 -4.913 89.661 3.320 0.289 1.907 H1 A1LWR 33 A1LWR H2 H2 H 0 1 N N N N N N -2.700 -5.229 88.496 1.878 -0.754 1.949 H2 A1LWR 34 A1LWR H3 H3 H 0 1 N N N N N N -4.125 -1.890 87.971 1.571 -2.513 0.264 H3 A1LWR 35 A1LWR H4 H4 H 0 1 N N N N N N -6.895 -3.146 84.633 5.040 -3.763 -1.879 H4 A1LWR 36 A1LWR H6 H6 H 0 1 N N N N N N 4.921 -6.863 86.315 -6.406 -0.365 -2.113 H6 A1LWR 37 A1LWR H7 H7 H 0 1 N N N N N N 6.120 -5.531 86.434 -6.954 -1.857 -1.321 H7 A1LWR 38 A1LWR H8 H8 H 0 1 N N N N N N 3.533 -7.459 88.374 -6.120 1.722 -0.702 H8 A1LWR 39 A1LWR H9 H9 H 0 1 N N N N N N 3.752 -6.487 89.869 -6.833 1.776 0.933 H9 A1LWR 40 A1LWR H10 H10 H 0 1 N N N N N N 2.396 -1.184 88.637 -3.105 1.416 -1.032 H10 A1LWR 41 A1LWR H11 H11 H 0 1 N N N N N N 0.693 -0.303 90.419 -1.280 2.927 -1.676 H11 A1LWR 42 A1LWR H12 H12 H 0 1 N N N N N N -0.344 -5.613 87.528 0.191 -2.115 0.858 H12 A1LWR 43 A1LWR H13 H13 H 0 1 N N N N N N -1.738 -4.693 86.866 0.431 -1.030 2.248 H13 A1LWR 44 A1LWR H14 H14 H 0 1 N N N N N N -0.119 -4.546 86.101 -1.189 -1.678 1.893 H14 A1LWR 45 A1LWR H15 H15 H 0 1 N N N N N N -3.055 -0.512 92.332 1.493 4.576 -0.947 H15 A1LWR 46 A1LWR H16 H16 H 0 1 N N N N N N -1.275 -0.654 92.531 2.629 3.707 -2.006 H16 A1LWR 47 A1LWR H17 H17 H 0 1 N N N N N N -1.956 0.485 91.321 0.892 3.734 -2.395 H17 A1LWR 48 A1LWR H18 H18 H 0 1 N N N N N N -5.750 -1.275 86.023 2.704 -4.139 -1.197 H18 A1LWR 49 A1LWR H19 H19 H 0 1 N N N N N N -6.460 -5.644 85.200 6.241 -1.758 -1.105 H19 A1LWR 50 A1LWR H21 H21 H 0 1 N N N N N N 5.866 -6.720 88.583 -8.114 0.211 -0.485 H21 A1LWR 51 A1LWR H22 H22 H 0 1 N N N N N N 5.333 -5.009 88.709 -7.260 -0.689 0.793 H22 A1LWR 52 A1LWR H23 H23 H 0 1 N N N N N N 3.640 -3.479 84.989 -3.496 -2.476 -0.991 H23 A1LWR 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LWR O28 C23 SING N N 1 A1LWR C17 C18 DOUB Y N 2 A1LWR C17 C16 SING Y N 3 A1LWR O22 C20 DOUB N N 4 A1LWR C18 C19 SING Y N 5 A1LWR C23 C24 SING N N 6 A1LWR C23 C21 DOUB N N 7 A1LWR C16 C15 DOUB Y N 8 A1LWR O32 N30 SING N N 9 A1LWR C24 C25 SING N N 10 A1LWR C20 C21 SING N N 11 A1LWR C20 C01 SING N N 12 A1LWR C19 N30 SING N N 13 A1LWR C19 C14 DOUB Y N 14 A1LWR C07 C06 SING N N 15 A1LWR C21 C27 SING N N 16 A1LWR N30 O31 DOUB N N 17 A1LWR C15 C14 SING Y N 18 A1LWR C14 C13 SING N N 19 A1LWR C01 C06 DOUB Y N 20 A1LWR C01 C02 SING Y N 21 A1LWR C06 C05 SING Y N 22 A1LWR C25 C26 SING N N 23 A1LWR C27 C26 SING N N 24 A1LWR C27 O29 DOUB N N 25 A1LWR C02 C03 DOUB Y N 26 A1LWR C13 N10 SING N N 27 A1LWR C05 N10 SING N N 28 A1LWR C05 C04 DOUB Y N 29 A1LWR N10 C09 SING N N 30 A1LWR C03 C04 SING Y N 31 A1LWR C04 N08 SING N N 32 A1LWR C09 N08 SING N N 33 A1LWR C09 O11 DOUB N N 34 A1LWR N08 C12 SING N N 35 A1LWR C13 H1 SING N N 36 A1LWR C13 H2 SING N N 37 A1LWR C15 H3 SING N N 38 A1LWR C17 H4 SING N N 39 A1LWR C24 H6 SING N N 40 A1LWR C24 H7 SING N N 41 A1LWR C26 H8 SING N N 42 A1LWR C26 H9 SING N N 43 A1LWR C02 H10 SING N N 44 A1LWR C03 H11 SING N N 45 A1LWR C07 H12 SING N N 46 A1LWR C07 H13 SING N N 47 A1LWR C07 H14 SING N N 48 A1LWR C12 H15 SING N N 49 A1LWR C12 H16 SING N N 50 A1LWR C12 H17 SING N N 51 A1LWR C16 H18 SING N N 52 A1LWR C18 H19 SING N N 53 A1LWR C25 H21 SING N N 54 A1LWR C25 H22 SING N N 55 A1LWR O28 H23 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LWR InChI InChI 1.06 "InChI=1S/C23H21N3O6/c1-13-15(22(29)20-18(27)8-5-9-19(20)28)10-11-17-21(13)25(23(30)24(17)2)12-14-6-3-4-7-16(14)26(31)32/h3-4,6-7,10-11,27H,5,8-9,12H2,1-2H3" A1LWR InChIKey InChI 1.06 DRLROISZNNCBFZ-UHFFFAOYSA-N A1LWR SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(Cc2ccccc2[N+]([O-])=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" A1LWR SMILES CACTVS 3.385 "CN1C(=O)N(Cc2ccccc2[N+]([O-])=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" A1LWR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)Cc3ccccc3[N+](=O)[O-])C(=O)C4=C(CCCC4=O)O" A1LWR SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)Cc3ccccc3[N+](=O)[O-])C(=O)C4=C(CCCC4=O)O" # _pdbx_chem_comp_identifier.comp_id A1LWR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1,4-dimethyl-3-[(2-nitrophenyl)methyl]-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LWR "Create component" 2024-01-17 PDBJ A1LWR "Modify name" 2024-04-25 PDBJ A1LWR "Modify formula" 2024-04-25 PDBJ A1LWR "Modify linking type" 2024-04-25 PDBJ A1LWR "Initial release" 2025-01-15 RCSB #