data_A1LWU # _chem_comp.id A1LWU _chem_comp.name "4-[[1,6-dimethyl-2,5-bis(oxidanylidene)-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3~{H}-1,4-benzodiazepin-4-yl]methyl]benzenecarbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H23 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-17 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.478 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LWU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8XQV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LWU C13 C1 C 0 1 N N N N N N 45.860 1.852 36.519 2.945 -1.130 0.534 C13 A1LWU 1 A1LWU C17 C2 C 0 1 N N N N N N 45.763 3.797 39.784 6.805 -1.098 0.304 C17 A1LWU 2 A1LWU C20 C3 C 0 1 N N N N N N 47.344 3.921 37.277 4.498 -1.174 -1.480 C20 A1LWU 3 A1LWU C24 C4 C 0 1 N N N N N N 48.983 2.131 29.435 -3.882 1.256 0.933 C24 A1LWU 4 A1LWU C26 C5 C 0 1 N N N N N N 50.533 -1.860 33.325 0.305 4.669 -0.078 C26 A1LWU 5 A1LWU C28 C6 C 0 1 Y N N N N N 47.727 3.119 27.420 -4.231 -1.210 1.167 C28 A1LWU 6 A1LWU C01 C7 C 0 1 Y N N N N N 46.820 1.363 35.448 2.064 0.035 0.321 C01 A1LWU 7 A1LWU C02 C8 C 0 1 Y N N N N N 47.621 0.148 35.911 2.555 1.182 -0.315 C02 A1LWU 8 A1LWU C03 C9 C 0 1 Y N N N N N 48.605 -0.451 34.921 1.735 2.264 -0.508 C03 A1LWU 9 A1LWU C04 C10 C 0 1 Y N N N N N 48.753 0.141 33.534 0.403 2.243 -0.078 C04 A1LWU 10 A1LWU C05 C11 C 0 1 Y N N N N N 47.976 1.364 32.974 -0.099 1.101 0.553 C05 A1LWU 11 A1LWU C06 C12 C 0 1 Y N N N N N 46.956 1.962 34.034 0.740 -0.003 0.746 C06 A1LWU 12 A1LWU N07 N1 N 0 1 N N N N N N 49.912 -0.749 32.652 -0.349 3.378 -0.303 N07 A1LWU 13 A1LWU C08 C13 C 0 1 N N N N N N 50.373 -0.459 31.101 -1.616 3.401 -0.706 C08 A1LWU 14 A1LWU C09 C14 C 0 1 N N N N N N 49.759 0.644 30.442 -2.408 2.140 -0.918 C09 A1LWU 15 A1LWU N10 N2 N 0 1 N N N N N N 48.963 1.406 30.702 -2.546 1.449 0.363 N10 A1LWU 16 A1LWU C11 C15 C 0 1 N N N N N N 48.165 1.832 31.748 -1.485 0.989 1.024 C11 A1LWU 17 A1LWU C12 C16 C 0 1 N N N N N N 46.040 3.165 33.808 0.207 -1.239 1.424 C12 A1LWU 18 A1LWU C14 C17 C 0 1 N N N N N N 46.017 3.162 37.279 4.305 -1.136 -0.026 C14 A1LWU 19 A1LWU O15 O1 O 0 1 N N N N N N 44.943 1.140 36.795 2.548 -2.083 1.177 O15 A1LWU 20 A1LWU C16 C18 C 0 1 N N N N N N 45.147 3.198 38.526 5.394 -1.105 0.813 C16 A1LWU 21 A1LWU C18 C19 C 0 1 N N N N N N 47.283 3.714 39.752 6.881 -1.659 -1.115 C18 A1LWU 22 A1LWU C19 C20 C 0 1 N N N N N N 47.831 4.519 38.578 5.891 -0.904 -2.012 C19 A1LWU 23 A1LWU O21 O2 O 0 1 N N N N N N 44.172 2.184 38.652 5.186 -1.083 2.137 O21 A1LWU 24 A1LWU O22 O3 O 0 1 N N N N N N 48.001 4.040 36.297 3.575 -1.414 -2.230 O22 A1LWU 25 A1LWU O23 O4 O 0 1 N N N N N N 47.510 2.770 31.480 -1.677 0.439 2.091 O23 A1LWU 26 A1LWU O25 O5 O 0 1 N N N N N N 51.183 -1.124 30.588 -2.149 4.472 -0.908 O25 A1LWU 27 A1LWU C27 C21 C 0 1 Y N N N N N 47.689 2.259 28.662 -4.453 -0.051 0.445 C27 A1LWU 28 A1LWU C29 C22 C 0 1 Y N N N N N 46.470 3.341 26.608 -4.750 -2.410 0.727 C29 A1LWU 29 A1LWU C30 C23 C 0 1 Y N N N N N 45.177 2.694 27.058 -5.502 -2.453 -0.449 C30 A1LWU 30 A1LWU C31 C24 C 0 1 Y N N N N N 45.124 1.842 28.305 -5.722 -1.278 -1.172 C31 A1LWU 31 A1LWU C32 C25 C 0 1 Y N N N N N 46.390 1.624 29.111 -5.197 -0.086 -0.721 C32 A1LWU 32 A1LWU C33 C26 C 0 1 N N N N N N 43.921 2.925 26.240 -6.044 -3.695 -0.912 C33 A1LWU 33 A1LWU N34 N3 N 0 1 N N N N N N 42.996 3.103 25.626 -6.474 -4.680 -1.279 N34 A1LWU 34 A1LWU H1 H1 H 0 1 N N N N N N 45.464 4.853 39.861 7.180 -0.074 0.304 H1 A1LWU 35 A1LWU H2 H2 H 0 1 N N N N N N 45.393 3.246 40.661 7.426 -1.705 0.962 H2 A1LWU 36 A1LWU H3 H3 H 0 1 N N N N N N 49.337 3.150 29.649 -3.815 1.240 2.020 H3 A1LWU 37 A1LWU H4 H4 H 0 1 N N N N N N 49.705 1.622 28.780 -4.531 2.075 0.621 H4 A1LWU 38 A1LWU H5 H5 H 0 1 N N N N N N 50.135 -1.939 34.348 -0.398 5.475 -0.291 H5 A1LWU 39 A1LWU H6 H6 H 0 1 N N N N N N 50.318 -2.788 32.776 0.629 4.736 0.961 H6 A1LWU 40 A1LWU H7 H7 H 0 1 N N N N N N 51.621 -1.702 33.366 1.170 4.758 -0.735 H7 A1LWU 41 A1LWU H8 H8 H 0 1 N N N N N N 48.655 3.577 27.111 -3.645 -1.177 2.074 H8 A1LWU 42 A1LWU H9 H9 H 0 1 N N N N N N 47.493 -0.267 36.900 3.581 1.214 -0.652 H9 A1LWU 43 A1LWU H10 H10 H 0 1 N N N N N N 49.203 -1.304 35.207 2.121 3.145 -0.999 H10 A1LWU 44 A1LWU H13 H13 H 0 1 N N N N N N 50.621 1.278 30.185 -3.395 2.390 -1.307 H13 A1LWU 45 A1LWU H14 H14 H 0 1 N N N N N N 49.357 0.182 29.528 -1.886 1.496 -1.626 H14 A1LWU 46 A1LWU H15 H15 H 0 1 N N N N N N 46.565 4.086 34.100 0.459 -1.209 2.484 H15 A1LWU 47 A1LWU H16 H16 H 0 1 N N N N N N 45.765 3.221 32.744 -0.876 -1.278 1.308 H16 A1LWU 48 A1LWU H17 H17 H 0 1 N N N N N N 45.131 3.053 34.417 0.653 -2.124 0.969 H17 A1LWU 49 A1LWU H20 H20 H 0 1 N N N N N N 47.689 4.119 40.691 7.892 -1.533 -1.503 H20 A1LWU 50 A1LWU H21 H21 H 0 1 N N N N N N 47.587 2.662 39.645 6.625 -2.718 -1.102 H21 A1LWU 51 A1LWU H22 H22 H 0 1 N N N N N N 48.931 4.497 38.601 5.972 -1.264 -3.037 H22 A1LWU 52 A1LWU H23 H23 H 0 1 N N N N N N 47.483 5.560 38.655 6.100 0.165 -1.976 H23 A1LWU 53 A1LWU H24 H24 H 0 1 N N N N N N 44.272 1.558 37.944 4.267 -1.061 2.437 H24 A1LWU 54 A1LWU H25 H25 H 0 1 N N N N N N 46.495 3.953 25.719 -4.576 -3.315 1.290 H25 A1LWU 55 A1LWU H26 H26 H 0 1 N N N N N N 44.194 1.393 28.619 -6.302 -1.304 -2.083 H26 A1LWU 56 A1LWU H27 H27 H 0 1 N N N N N N 46.365 1.017 30.004 -5.367 0.823 -1.279 H27 A1LWU 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LWU C13 C01 SING N N 1 A1LWU C13 C14 SING N N 2 A1LWU C13 O15 DOUB N N 3 A1LWU C17 C16 SING N N 4 A1LWU C17 C18 SING N N 5 A1LWU C20 C14 SING N N 6 A1LWU C20 C19 SING N N 7 A1LWU C20 O22 DOUB N N 8 A1LWU C24 N10 SING N N 9 A1LWU C24 C27 SING N N 10 A1LWU C26 N07 SING N N 11 A1LWU C28 C27 DOUB Y N 12 A1LWU C28 C29 SING Y N 13 A1LWU C01 C02 DOUB Y N 14 A1LWU C01 C06 SING Y N 15 A1LWU C02 C03 SING Y N 16 A1LWU C03 C04 DOUB Y N 17 A1LWU C04 C05 SING Y N 18 A1LWU C05 C06 DOUB Y N 19 A1LWU C05 C11 SING N N 20 A1LWU C06 C12 SING N N 21 A1LWU N07 C08 SING N N 22 A1LWU C08 C09 SING N N 23 A1LWU C08 O25 DOUB N N 24 A1LWU C09 N10 SING N N 25 A1LWU N10 C11 SING N N 26 A1LWU C11 O23 DOUB N N 27 A1LWU C14 C16 DOUB N N 28 A1LWU C16 O21 SING N N 29 A1LWU C18 C19 SING N N 30 A1LWU C27 C32 SING Y N 31 A1LWU C29 C30 DOUB Y N 32 A1LWU C30 C31 SING Y N 33 A1LWU C30 C33 SING N N 34 A1LWU C31 C32 DOUB Y N 35 A1LWU C33 N34 TRIP N N 36 A1LWU C17 H1 SING N N 37 A1LWU C17 H2 SING N N 38 A1LWU C24 H3 SING N N 39 A1LWU C24 H4 SING N N 40 A1LWU C26 H5 SING N N 41 A1LWU C26 H6 SING N N 42 A1LWU C26 H7 SING N N 43 A1LWU C28 H8 SING N N 44 A1LWU C02 H9 SING N N 45 A1LWU C03 H10 SING N N 46 A1LWU C09 H13 SING N N 47 A1LWU C09 H14 SING N N 48 A1LWU C12 H15 SING N N 49 A1LWU C12 H16 SING N N 50 A1LWU C12 H17 SING N N 51 A1LWU C18 H20 SING N N 52 A1LWU C18 H21 SING N N 53 A1LWU C19 H22 SING N N 54 A1LWU C19 H23 SING N N 55 A1LWU O21 H24 SING N N 56 A1LWU C29 H25 SING N N 57 A1LWU C31 H26 SING N N 58 A1LWU C32 H27 SING N N 59 A1LWU N07 C04 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LWU InChI InChI 1.06 "InChI=1S/C26H23N3O5/c1-15-18(25(33)24-20(30)4-3-5-21(24)31)10-11-19-23(15)26(34)29(14-22(32)28(19)2)13-17-8-6-16(12-27)7-9-17/h6-11,30H,3-5,13-14H2,1-2H3" A1LWU InChIKey InChI 1.06 UFOLPYYCKLLBGZ-UHFFFAOYSA-N A1LWU SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)CN(Cc2ccc(cc2)C#N)C(=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" A1LWU SMILES CACTVS 3.385 "CN1C(=O)CN(Cc2ccc(cc2)C#N)C(=O)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O" A1LWU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)Cc3ccc(cc3)C#N)C(=O)C4=C(CCCC4=O)O" A1LWU SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1C(=O)N(CC(=O)N2C)Cc3ccc(cc3)C#N)C(=O)C4=C(CCCC4=O)O" # _pdbx_chem_comp_identifier.comp_id A1LWU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[1,6-dimethyl-2,5-bis(oxidanylidene)-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3~{H}-1,4-benzodiazepin-4-yl]methyl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LWU "Create component" 2024-01-17 PDBJ A1LWU "Modify linking type" 2024-04-23 PDBJ A1LWU "Modify formula" 2024-04-23 PDBJ A1LWU "Modify name" 2024-04-23 PDBJ A1LWU "Initial release" 2025-01-15 RCSB #