data_A1LX1 # _chem_comp.id A1LX1 _chem_comp.name "6-(iminomethyl)-4-(2-pyridin-2-ylethyl)-2-[4-(trifluoromethyl)phenyl]-1,2,4-triazine-3,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H14 F3 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-08 _chem_comp.pdbx_modified_date 2025-01-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.331 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LX1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Y7T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LX1 C10 C1 C 0 1 Y N N N N N -16.438 -0.634 -0.569 3.220 1.368 -0.698 C10 A1LX1 1 A1LX1 C17 C2 C 0 1 Y N N N N N -14.992 -2.600 -1.881 2.907 -0.971 0.751 C17 A1LX1 2 A1LX1 C20 C3 C 0 1 N N N N N N -9.417 -1.620 -2.033 -2.917 -0.118 0.664 C20 A1LX1 3 A1LX1 C21 C4 C 0 1 N N N N N N -8.691 -2.829 -2.640 -3.493 0.433 -0.641 C21 A1LX1 4 A1LX1 C22 C5 C 0 1 Y N N N N N -7.424 -2.412 -3.396 -4.715 1.262 -0.341 C22 A1LX1 5 A1LX1 C24 C6 C 0 1 Y N N N N N -5.452 -2.973 -4.689 -5.912 3.321 -0.506 C24 A1LX1 6 A1LX1 C26 C7 C 0 1 Y N N N N N -6.026 -0.712 -4.118 -6.800 1.417 0.627 C26 A1LX1 7 A1LX1 C02 C8 C 0 1 N N N N N N -10.266 -2.630 0.137 -1.835 -2.253 0.139 C02 A1LX1 8 A1LX1 C03 C9 C 0 1 N N N N N N -11.413 -2.985 1.034 -0.595 -3.000 -0.148 C03 A1LX1 9 A1LX1 C04 C10 C 0 1 N N N N N N -11.220 -3.661 2.391 -0.636 -4.447 -0.417 C04 A1LX1 10 A1LX1 C08 C11 C 0 1 Y N N N N N -14.393 -1.810 -0.920 1.833 -0.441 0.047 C08 A1LX1 11 A1LX1 C09 C12 C 0 1 Y N N N N N -15.104 -0.828 -0.248 1.996 0.729 -0.683 C09 A1LX1 12 A1LX1 C11 C13 C 0 1 Y N N N N N -17.028 -1.429 -1.539 4.285 0.840 0.009 C11 A1LX1 13 A1LX1 C12 C14 C 0 1 N N N N N N -18.492 -1.214 -1.889 5.620 1.540 -0.009 C12 A1LX1 14 A1LX1 C16 C15 C 0 1 Y N N N N N -16.316 -2.417 -2.203 4.129 -0.328 0.733 C16 A1LX1 15 A1LX1 C18 C16 C 0 1 N N N N N N -11.884 -1.690 -1.523 -0.505 -0.358 0.340 C18 A1LX1 16 A1LX1 C23 C17 C 0 1 Y N N N N N -6.602 -3.360 -4.003 -4.782 2.568 -0.788 C23 A1LX1 17 A1LX1 C25 C18 C 0 1 Y N N N N N -5.171 -1.613 -4.745 -6.936 2.730 0.218 C25 A1LX1 18 A1LX1 F13 F1 F 0 1 N N N N N N -18.977 -2.217 -2.682 6.643 0.597 0.138 F13 A1LX1 19 A1LX1 F14 F2 F 0 1 N N N N N N -18.623 0.009 -2.468 5.777 2.214 -1.225 F14 A1LX1 20 A1LX1 F15 F3 F 0 1 N N N N N N -19.173 -1.218 -0.741 5.679 2.459 1.044 F15 A1LX1 21 A1LX1 N05 N1 N 0 1 N N N N N N -10.871 -4.859 2.426 0.460 -5.090 -0.668 N05 A1LX1 22 A1LX1 N06 N2 N 0 1 N N N N N N -12.758 -2.688 0.622 0.546 -2.347 -0.160 N06 A1LX1 23 A1LX1 N07 N3 N 0 1 N N N N N N -13.010 -2.051 -0.615 0.591 -1.084 0.073 N07 A1LX1 24 A1LX1 N19 N4 N 0 1 N N N N N N -10.510 -1.986 -1.129 -1.729 -0.923 0.372 N19 A1LX1 25 A1LX1 N27 N5 N 0 1 Y N N N N N -7.105 -1.130 -3.476 -5.711 0.731 0.342 N27 A1LX1 26 A1LX1 O01 O1 O 0 1 N N N N N N -9.171 -2.889 0.490 -2.916 -2.811 0.161 O01 A1LX1 27 A1LX1 O28 O2 O 0 1 N N N N N N -12.076 -1.163 -2.566 -0.393 0.833 0.556 O28 A1LX1 28 A1LX1 H1 H1 H 0 1 N N N N N N -17.013 0.130 -0.068 3.347 2.278 -1.265 H1 A1LX1 29 A1LX1 H2 H2 H 0 1 N N N N N N -14.418 -3.365 -2.382 2.784 -1.881 1.320 H2 A1LX1 30 A1LX1 H3 H3 H 0 1 N N N N N N -8.686 -1.022 -1.470 -2.643 0.710 1.319 H3 A1LX1 31 A1LX1 H4 H4 H 0 1 N N N N N N -9.832 -1.015 -2.853 -3.664 -0.739 1.158 H4 A1LX1 32 A1LX1 H5 H5 H 0 1 N N N N N N -9.371 -3.339 -3.339 -2.746 1.055 -1.135 H5 A1LX1 33 A1LX1 H6 H6 H 0 1 N N N N N N -8.412 -3.520 -1.831 -3.767 -0.394 -1.296 H6 A1LX1 34 A1LX1 H7 H7 H 0 1 N N N N N N -4.806 -3.700 -5.158 -5.992 4.345 -0.842 H7 A1LX1 35 A1LX1 H8 H8 H 0 1 N N N N N N -5.806 0.345 -4.156 -7.595 0.948 1.189 H8 A1LX1 36 A1LX1 H9 H9 H 0 1 N N N N N N -11.383 -3.111 3.306 -1.579 -4.973 -0.405 H9 A1LX1 37 A1LX1 H10 H10 H 0 1 N N N N N N -14.627 -0.226 0.511 1.166 1.140 -1.239 H10 A1LX1 38 A1LX1 H11 H11 H 0 1 N N N N N N -16.791 -3.029 -2.956 4.964 -0.739 1.280 H11 A1LX1 39 A1LX1 H12 H12 H 0 1 N N N N N N -6.859 -4.407 -3.941 -3.965 2.996 -1.349 H12 A1LX1 40 A1LX1 H13 H13 H 0 1 N N N N N N -4.297 -1.259 -5.271 -7.830 3.288 0.456 H13 A1LX1 41 A1LX1 H14 H14 H 0 1 N N N N N N -10.776 -5.194 3.363 0.434 -6.043 -0.845 H14 A1LX1 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LX1 C25 C24 DOUB Y N 1 A1LX1 C25 C26 SING Y N 2 A1LX1 C24 C23 SING Y N 3 A1LX1 C26 N27 DOUB Y N 4 A1LX1 C23 C22 DOUB Y N 5 A1LX1 N27 C22 SING Y N 6 A1LX1 C22 C21 SING N N 7 A1LX1 F13 C12 SING N N 8 A1LX1 C21 C20 SING N N 9 A1LX1 O28 C18 DOUB N N 10 A1LX1 F14 C12 SING N N 11 A1LX1 C16 C17 DOUB Y N 12 A1LX1 C16 C11 SING Y N 13 A1LX1 C20 N19 SING N N 14 A1LX1 C12 C11 SING N N 15 A1LX1 C12 F15 SING N N 16 A1LX1 C17 C08 SING Y N 17 A1LX1 C11 C10 DOUB Y N 18 A1LX1 C18 N19 SING N N 19 A1LX1 C18 N07 SING N N 20 A1LX1 N19 C02 SING N N 21 A1LX1 C08 N07 SING N N 22 A1LX1 C08 C09 DOUB Y N 23 A1LX1 N07 N06 SING N N 24 A1LX1 C10 C09 SING Y N 25 A1LX1 C02 O01 DOUB N N 26 A1LX1 C02 C03 SING N N 27 A1LX1 N06 C03 DOUB N N 28 A1LX1 C03 C04 SING N N 29 A1LX1 C04 N05 DOUB N N 30 A1LX1 C10 H1 SING N N 31 A1LX1 C17 H2 SING N N 32 A1LX1 C20 H3 SING N N 33 A1LX1 C20 H4 SING N N 34 A1LX1 C21 H5 SING N N 35 A1LX1 C21 H6 SING N N 36 A1LX1 C24 H7 SING N N 37 A1LX1 C26 H8 SING N N 38 A1LX1 C04 H9 SING N N 39 A1LX1 C09 H10 SING N N 40 A1LX1 C16 H11 SING N N 41 A1LX1 C23 H12 SING N N 42 A1LX1 C25 H13 SING N N 43 A1LX1 N05 H14 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LX1 InChI InChI 1.06 "InChI=1S/C18H14F3N5O2/c19-18(20,21)12-4-6-14(7-5-12)26-17(28)25(16(27)15(11-22)24-26)10-8-13-3-1-2-9-23-13/h1-7,9,11,22H,8,10H2/b22-11-" A1LX1 InChIKey InChI 1.06 YEBJSFQNRVLLRG-JJFYIABZSA-N A1LX1 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1ccc(cc1)N2N=C(C=N)C(=O)N(CCc3ccccn3)C2=O" A1LX1 SMILES CACTVS 3.385 "FC(F)(F)c1ccc(cc1)N2N=C(C=N)C(=O)N(CCc3ccccn3)C2=O" A1LX1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\C1=NN(C(=O)N(C1=O)CCc2ccccn2)c3ccc(cc3)C(F)(F)F" A1LX1 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)CCN2C(=O)C(=NN(C2=O)c3ccc(cc3)C(F)(F)F)C=N" # _pdbx_chem_comp_identifier.comp_id A1LX1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-(iminomethyl)-4-(2-pyridin-2-ylethyl)-2-[4-(trifluoromethyl)phenyl]-1,2,4-triazine-3,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LX1 "Create component" 2024-02-08 PDBJ A1LX1 "Modify PCM" 2024-09-27 PDBE A1LX1 "Initial release" 2025-02-05 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1LX1 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C04 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #