data_A1LX7
#
_chem_comp.id A1LX7
_chem_comp.name "[(2R)-2-octanoyloxy-3-[oxidanyl-[(2R,3R,5S,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H47 O13 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-02-12
_chem_comp.pdbx_modified_date 2024-05-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 586.607
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1LX7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8Y9I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1LX7 C10 C1 C 0 1 N N N N N N 85.183 104.458 103.313 -1.139 2.978 1.939 C10 A1LX7 1
A1LX7 C15 C2 C 0 1 N N N N N N 90.084 103.168 103.970 -6.433 0.830 -0.100 C15 A1LX7 2
A1LX7 C16 C3 C 0 1 N N N N N N 89.841 104.062 102.759 -7.192 0.583 -1.405 C16 A1LX7 3
A1LX7 C17 C4 C 0 1 N N N N N N 91.081 104.766 102.230 -8.649 0.236 -1.090 C17 A1LX7 4
A1LX7 C18 C5 C 0 1 N N N N N N 91.023 104.909 100.718 -9.408 -0.011 -2.395 C18 A1LX7 5
A1LX7 C19 C6 C 0 1 N N N N N N 91.663 103.710 100.038 -10.865 -0.358 -2.080 C19 A1LX7 6
A1LX7 C20 C7 C 0 1 N N N N N N 93.173 103.692 100.221 -11.624 -0.605 -3.385 C20 A1LX7 7
A1LX7 C28 C8 C 0 1 N N R N N N 85.724 105.307 110.907 3.426 -2.206 0.528 C28 A1LX7 8
A1LX7 C32 C9 C 0 1 N N N N N N 87.689 104.698 112.406 3.892 -4.188 -0.920 C32 A1LX7 9
A1LX7 C22 C10 C 0 1 N N N N N N 85.075 104.858 105.714 -1.692 0.640 2.625 C22 A1LX7 10
A1LX7 C11 C11 C 0 1 N N R N N N 85.726 103.980 104.659 -2.269 1.961 2.115 C11 A1LX7 11
A1LX7 C13 C12 C 0 1 N N N N N N 87.925 103.176 105.232 -4.228 1.420 0.870 C13 A1LX7 12
A1LX7 C01 C13 C 0 1 N N N N N N 85.674 103.301 96.069 8.679 4.316 -3.176 C01 A1LX7 13
A1LX7 C02 C14 C 0 1 N N N N N N 86.985 102.767 95.504 7.560 4.836 -2.271 C02 A1LX7 14
A1LX7 C03 C15 C 0 1 N N N N N N 87.845 102.130 96.585 6.470 3.770 -2.143 C03 A1LX7 15
A1LX7 C04 C16 C 0 1 N N N N N N 87.301 102.448 97.973 5.352 4.290 -1.238 C04 A1LX7 16
A1LX7 C05 C17 C 0 1 N N N N N N 88.335 102.184 99.058 4.262 3.224 -1.110 C05 A1LX7 17
A1LX7 C06 C18 C 0 1 N N N N N N 87.690 101.794 100.380 3.143 3.744 -0.205 C06 A1LX7 18
A1LX7 C07 C19 C 0 1 N N N N N N 86.245 102.257 100.477 2.053 2.678 -0.076 C07 A1LX7 19
A1LX7 C08 C20 C 0 1 N N N N N N 86.086 103.393 101.472 0.951 3.190 0.815 C08 A1LX7 20
A1LX7 O09 O1 O 0 1 N N N N N N 85.077 103.384 102.429 -0.117 2.419 1.072 O09 A1LX7 21
A1LX7 O12 O2 O 0 1 N N N N N N 87.109 104.177 104.700 -2.926 1.742 0.838 O12 A1LX7 22
A1LX7 C14 C21 C 0 1 N N N N N N 88.839 102.369 104.330 -4.977 1.177 -0.415 C14 A1LX7 23
A1LX7 O21 O3 O 0 1 N N N N N N 87.954 102.974 106.386 -4.801 1.325 1.930 O21 A1LX7 24
A1LX7 O23 O4 O 0 1 N N N N N N 84.234 104.074 106.490 -0.660 0.197 1.741 O23 A1LX7 25
A1LX7 P24 P1 P 0 1 N N N N N N 84.842 103.494 107.894 0.169 -1.163 1.972 P24 A1LX7 26
A1LX7 O25 O5 O 0 1 N N N N N N 83.704 103.175 108.811 1.038 -1.040 3.322 O25 A1LX7 27
A1LX7 O26 O6 O 0 1 N N N N N N 85.844 104.538 108.647 1.151 -1.412 0.721 O26 A1LX7 28
A1LX7 C27 C22 C 0 1 N N N N N N 86.144 104.182 109.964 1.946 -2.591 0.578 C27 A1LX7 29
A1LX7 O29 O7 O 0 1 N N N N N N 86.305 106.494 110.463 3.655 -1.339 -0.584 O29 A1LX7 30
A1LX7 C30 C23 C 0 1 N N R N N N 86.202 105.071 112.337 4.276 -3.469 0.375 C30 A1LX7 31
A1LX7 O31 O8 O 0 1 N N N N N N 86.004 106.272 113.030 5.659 -3.109 0.328 O31 A1LX7 32
A1LX7 O33 O9 O 0 1 N N N N N N 88.039 104.321 113.711 4.687 -5.367 -1.064 O33 A1LX7 33
A1LX7 C34 C24 C 0 1 N N S N N N 88.000 103.518 111.493 2.412 -4.573 -0.871 C34 A1LX7 34
A1LX7 O35 O10 O 0 1 N N N N N N 89.355 103.191 111.620 2.054 -5.244 -2.080 O35 A1LX7 35
A1LX7 C36 C25 C 0 1 N N R N N N 87.635 103.887 110.056 1.562 -3.310 -0.717 C36 A1LX7 36
A1LX7 O37 O11 O 0 1 N N N N N N 87.886 102.806 109.209 0.180 -3.670 -0.670 O37 A1LX7 37
A1LX7 O38 O12 O 0 1 N N N N N N 85.579 102.216 107.664 -0.772 -2.299 2.094 O38 A1LX7 38
A1LX7 O39 O13 O 0 1 N N N N N N 86.832 104.300 101.429 1.030 4.295 1.298 O39 A1LX7 39
A1LX7 H1 H1 H 0 1 N N N N N N 85.866 105.210 102.891 -1.536 3.889 1.491 H1 A1LX7 40
A1LX7 H2 H2 H 0 1 N N N N N N 84.190 104.907 103.460 -0.705 3.210 2.911 H2 A1LX7 41
A1LX7 H3 H3 H 0 1 N N N N N N 90.903 102.470 103.741 -6.895 1.657 0.439 H3 A1LX7 42
A1LX7 H4 H4 H 0 1 N N N N N N 90.366 103.796 104.828 -6.467 -0.069 0.516 H4 A1LX7 43
A1LX7 H5 H5 H 0 1 N N N N N N 89.106 104.830 103.042 -7.158 1.482 -2.021 H5 A1LX7 44
A1LX7 H6 H6 H 0 1 N N N N N N 89.429 103.440 101.951 -6.730 -0.244 -1.944 H6 A1LX7 45
A1LX7 H7 H7 H 0 1 N N N N N N 91.971 104.180 102.502 -8.683 -0.663 -0.474 H7 A1LX7 46
A1LX7 H8 H8 H 0 1 N N N N N N 91.148 105.766 102.684 -9.111 1.063 -0.551 H8 A1LX7 47
A1LX7 H9 H9 H 0 1 N N N N N N 91.561 105.822 100.421 -9.374 0.888 -3.011 H9 A1LX7 48
A1LX7 H10 H10 H 0 1 N N N N N N 89.972 104.984 100.403 -8.946 -0.838 -2.934 H10 A1LX7 49
A1LX7 H11 H11 H 0 1 N N N N N N 91.436 103.748 98.962 -10.899 -1.257 -1.464 H11 A1LX7 50
A1LX7 H12 H12 H 0 1 N N N N N N 91.242 102.790 100.469 -11.327 0.469 -1.541 H12 A1LX7 51
A1LX7 H13 H13 H 0 1 N N N N N N 93.594 102.811 99.715 -12.661 -0.852 -3.160 H13 A1LX7 52
A1LX7 H14 H14 H 0 1 N N N N N N 93.606 104.605 99.787 -11.590 0.294 -4.001 H14 A1LX7 53
A1LX7 H15 H15 H 0 1 N N N N N N 93.412 103.647 101.294 -11.162 -1.432 -3.923 H15 A1LX7 54
A1LX7 H16 H16 H 0 1 N N N N N N 84.627 105.384 110.905 3.699 -1.694 1.451 H16 A1LX7 55
A1LX7 H17 H17 H 0 1 N N N N N N 88.285 105.564 112.082 4.068 -3.526 -1.769 H17 A1LX7 56
A1LX7 H18 H18 H 0 1 N N N N N N 85.851 105.309 106.350 -1.277 0.786 3.623 H18 A1LX7 57
A1LX7 H19 H19 H 0 1 N N N N N N 84.493 105.653 105.225 -2.482 -0.110 2.666 H19 A1LX7 58
A1LX7 H20 H20 H 0 1 N N N N N N 85.455 102.927 104.822 -2.993 2.344 2.834 H20 A1LX7 59
A1LX7 H21 H21 H 0 1 N N N N N N 85.082 103.752 95.259 9.105 3.411 -2.743 H21 A1LX7 60
A1LX7 H22 H22 H 0 1 N N N N N N 85.106 102.475 96.521 8.273 4.090 -4.162 H22 A1LX7 61
A1LX7 H23 H23 H 0 1 N N N N N N 85.888 104.061 96.835 9.455 5.075 -3.267 H23 A1LX7 62
A1LX7 H24 H24 H 0 1 N N N N N N 86.761 102.012 94.736 7.965 5.062 -1.285 H24 A1LX7 63
A1LX7 H25 H25 H 0 1 N N N N N N 87.542 103.599 95.049 7.134 5.741 -2.704 H25 A1LX7 64
A1LX7 H26 H26 H 0 1 N N N N N N 87.852 101.039 96.443 6.065 3.544 -3.129 H26 A1LX7 65
A1LX7 H27 H27 H 0 1 N N N N N N 88.871 102.518 96.503 6.897 2.865 -1.709 H27 A1LX7 66
A1LX7 H28 H28 H 0 1 N N N N N N 87.011 103.509 98.008 5.757 4.516 -0.252 H28 A1LX7 67
A1LX7 H29 H29 H 0 1 N N N N N N 86.418 101.820 98.162 4.925 5.195 -1.671 H29 A1LX7 68
A1LX7 H30 H30 H 0 1 N N N N N N 88.993 101.366 98.729 3.856 2.998 -2.096 H30 A1LX7 69
A1LX7 H31 H31 H 0 1 N N N N N N 88.931 103.096 99.209 4.688 2.319 -0.676 H31 A1LX7 70
A1LX7 H32 H32 H 0 1 N N N N N N 87.718 100.699 100.477 3.549 3.970 0.781 H32 A1LX7 71
A1LX7 H33 H33 H 0 1 N N N N N N 88.263 102.250 101.201 2.717 4.649 -0.638 H33 A1LX7 72
A1LX7 H34 H34 H 0 1 N N N N N N 85.914 102.602 99.486 1.648 2.452 -1.063 H34 A1LX7 73
A1LX7 H35 H35 H 0 1 N N N N N N 85.620 101.411 100.799 2.480 1.773 0.357 H35 A1LX7 74
A1LX7 H36 H36 H 0 1 N N N N N N 88.298 102.109 103.408 -4.514 0.350 -0.954 H36 A1LX7 75
A1LX7 H37 H37 H 0 1 N N N N N N 89.139 101.448 104.851 -4.942 2.076 -1.031 H37 A1LX7 76
A1LX7 H38 H38 H 0 1 N N N N N N 83.720 102.250 109.026 1.677 -0.314 3.312 H38 A1LX7 77
A1LX7 H39 H39 H 0 1 N N N N N N 85.593 103.272 110.244 1.771 -3.253 1.426 H39 A1LX7 78
A1LX7 H40 H40 H 0 1 N N N N N N 86.053 107.206 111.040 4.575 -1.054 -0.678 H40 A1LX7 79
A1LX7 H41 H41 H 0 1 N N N N N N 85.609 104.259 112.784 4.101 -4.130 1.223 H41 A1LX7 80
A1LX7 H42 H42 H 0 1 N N N N N N 86.290 106.170 113.930 6.258 -3.862 0.232 H42 A1LX7 81
A1LX7 H43 H43 H 0 1 N N N N N N 87.857 105.037 114.308 4.497 -5.874 -1.865 H43 A1LX7 82
A1LX7 H44 H44 H 0 1 N N N N N N 87.375 102.667 111.801 2.237 -5.234 -0.022 H44 A1LX7 83
A1LX7 H45 H45 H 0 1 N N N N N N 89.544 102.968 112.524 2.555 -6.056 -2.243 H45 A1LX7 84
A1LX7 H46 H46 H 0 1 N N N N N N 88.205 104.777 109.750 1.737 -2.649 -1.566 H46 A1LX7 85
A1LX7 H47 H47 H 0 1 N N N N N N 87.859 103.098 108.305 -0.134 -4.130 -1.461 H47 A1LX7 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1LX7 C02 C01 SING N N 1
A1LX7 C02 C03 SING N N 2
A1LX7 C03 C04 SING N N 3
A1LX7 C04 C05 SING N N 4
A1LX7 C05 C06 SING N N 5
A1LX7 C19 C20 SING N N 6
A1LX7 C19 C18 SING N N 7
A1LX7 C06 C07 SING N N 8
A1LX7 C07 C08 SING N N 9
A1LX7 C18 C17 SING N N 10
A1LX7 O39 C08 DOUB N N 11
A1LX7 C08 O09 SING N N 12
A1LX7 C17 C16 SING N N 13
A1LX7 O09 C10 SING N N 14
A1LX7 C16 C15 SING N N 15
A1LX7 C10 C11 SING N N 16
A1LX7 C15 C14 SING N N 17
A1LX7 C14 C13 SING N N 18
A1LX7 C11 O12 SING N N 19
A1LX7 C11 C22 SING N N 20
A1LX7 O12 C13 SING N N 21
A1LX7 C13 O21 DOUB N N 22
A1LX7 C22 O23 SING N N 23
A1LX7 O23 P24 SING N N 24
A1LX7 O38 P24 DOUB N N 25
A1LX7 P24 O26 SING N N 26
A1LX7 P24 O25 SING N N 27
A1LX7 O26 C27 SING N N 28
A1LX7 O37 C36 SING N N 29
A1LX7 C27 C36 SING N N 30
A1LX7 C27 C28 SING N N 31
A1LX7 C36 C34 SING N N 32
A1LX7 O29 C28 SING N N 33
A1LX7 C28 C30 SING N N 34
A1LX7 C34 O35 SING N N 35
A1LX7 C34 C32 SING N N 36
A1LX7 C30 C32 SING N N 37
A1LX7 C30 O31 SING N N 38
A1LX7 C32 O33 SING N N 39
A1LX7 C10 H1 SING N N 40
A1LX7 C10 H2 SING N N 41
A1LX7 C15 H3 SING N N 42
A1LX7 C15 H4 SING N N 43
A1LX7 C16 H5 SING N N 44
A1LX7 C16 H6 SING N N 45
A1LX7 C17 H7 SING N N 46
A1LX7 C17 H8 SING N N 47
A1LX7 C18 H9 SING N N 48
A1LX7 C18 H10 SING N N 49
A1LX7 C19 H11 SING N N 50
A1LX7 C19 H12 SING N N 51
A1LX7 C20 H13 SING N N 52
A1LX7 C20 H14 SING N N 53
A1LX7 C20 H15 SING N N 54
A1LX7 C28 H16 SING N N 55
A1LX7 C32 H17 SING N N 56
A1LX7 C22 H18 SING N N 57
A1LX7 C22 H19 SING N N 58
A1LX7 C11 H20 SING N N 59
A1LX7 C01 H21 SING N N 60
A1LX7 C01 H22 SING N N 61
A1LX7 C01 H23 SING N N 62
A1LX7 C02 H24 SING N N 63
A1LX7 C02 H25 SING N N 64
A1LX7 C03 H26 SING N N 65
A1LX7 C03 H27 SING N N 66
A1LX7 C04 H28 SING N N 67
A1LX7 C04 H29 SING N N 68
A1LX7 C05 H30 SING N N 69
A1LX7 C05 H31 SING N N 70
A1LX7 C06 H32 SING N N 71
A1LX7 C06 H33 SING N N 72
A1LX7 C07 H34 SING N N 73
A1LX7 C07 H35 SING N N 74
A1LX7 C14 H36 SING N N 75
A1LX7 C14 H37 SING N N 76
A1LX7 O25 H38 SING N N 77
A1LX7 C27 H39 SING N N 78
A1LX7 O29 H40 SING N N 79
A1LX7 C30 H41 SING N N 80
A1LX7 O31 H42 SING N N 81
A1LX7 O33 H43 SING N N 82
A1LX7 C34 H44 SING N N 83
A1LX7 O35 H45 SING N N 84
A1LX7 C36 H46 SING N N 85
A1LX7 O37 H47 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1LX7 InChI InChI 1.06 "InChI=1S/C25H47O13P/c1-3-5-7-9-11-13-18(26)35-15-17(37-19(27)14-12-10-8-6-4-2)16-36-39(33,34)38-25-23(31)21(29)20(28)22(30)24(25)32/h17,20-25,28-32H,3-16H2,1-2H3,(H,33,34)/t17-,20-,21-,22+,23-,24-,25-/m1/s1"
A1LX7 InChIKey InChI 1.06 UPUKKDCTWWVPCJ-OZRWLNDDSA-N
A1LX7 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1O)OC(=O)CCCCCCC"
A1LX7 SMILES CACTVS 3.385 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O)OC(=O)CCCCCCC"
A1LX7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OC[C@H](COP(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1O)O)O)O)O)OC(=O)CCCCCCC"
A1LX7 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O)OC(=O)CCCCCCC"
#
_pdbx_chem_comp_identifier.comp_id A1LX7
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(2~{R})-2-octanoyloxy-3-[oxidanyl-[(2~{R},3~{R},5~{S},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1LX7 "Create component" 2024-02-12 PDBJ
A1LX7 "Initial release" 2024-05-29 RCSB
#