data_A1LXD # _chem_comp.id A1LXD _chem_comp.name D-2-keto-3-deoxypentonate _chem_comp.type non-polymer _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2~{S},4~{S})-2,4-bis(oxidanyl)oxolane-2-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-31 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.114 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1LXD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Y4J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1LXD C1 C1 C 0 1 N N N N N N 28.504 12.579 19.689 -1.648 0.304 -0.236 C1 A1LXD 1 A1LXD C2 C2 C 0 1 N N S N N N 27.622 11.774 20.601 -0.378 -0.375 0.207 C2 A1LXD 2 A1LXD C3 C3 C 0 1 N N N N N N 26.243 12.404 20.646 0.554 0.635 0.913 C3 A1LXD 3 A1LXD C4 C4 C 0 1 N N S N N N 26.226 13.172 21.956 1.972 0.217 0.461 C4 A1LXD 4 A1LXD C5 C5 C 0 1 N N N N N N 27.183 12.394 22.832 1.728 -0.997 -0.463 C5 A1LXD 5 A1LXD O1A O1 O 0 1 N N N N N N 29.060 12.058 18.713 -1.994 0.242 -1.393 O1A A1LXD 6 A1LXD O1B O2 O 0 1 N N N N N N 28.836 13.807 20.093 -2.397 0.973 0.654 O1B A1LXD 7 A1LXD O2 O3 O 0 1 N N N N N N 27.539 10.416 20.155 -0.677 -1.468 1.078 O2 A1LXD 8 A1LXD O4 O4 O 0 1 N N N N N N 26.771 14.475 21.743 2.601 1.278 -0.260 O4 A1LXD 9 A1LXD O5 O5 O 0 1 N N N N N N 28.150 11.837 21.932 0.374 -0.834 -0.938 O5 A1LXD 10 A1LXD H1 H1 H 0 1 N N N N N N 26.097 13.084 19.794 0.334 1.651 0.585 H1 A1LXD 11 A1LXD H2 H2 H 0 1 N N N N N N 25.461 11.631 20.637 0.458 0.552 1.995 H2 A1LXD 12 A1LXD H3 H3 H 0 1 N N N N N N 25.216 13.199 22.391 2.576 -0.073 1.321 H3 A1LXD 13 A1LXD H4 H4 H 0 1 N N N N N N 26.651 11.595 23.369 2.427 -0.983 -1.299 H4 A1LXD 14 A1LXD H5 H5 H 0 1 N N N N N N 27.671 13.062 23.557 1.826 -1.926 0.097 H5 A1LXD 15 A1LXD H6 H6 H 0 1 N N N N N N 29.517 14.153 19.529 -3.203 1.392 0.322 H6 A1LXD 16 A1LXD H7 H7 H 0 1 N N N N N N 28.067 10.306 19.373 -1.240 -2.145 0.680 H7 A1LXD 17 A1LXD H8 H8 H 0 1 N N N N N N 26.763 14.960 22.560 3.494 1.069 -0.567 H8 A1LXD 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LXD O1A C1 DOUB N N 1 A1LXD C1 O1B SING N N 2 A1LXD C1 C2 SING N N 3 A1LXD O2 C2 SING N N 4 A1LXD C2 C3 SING N N 5 A1LXD C2 O5 SING N N 6 A1LXD C3 C4 SING N N 7 A1LXD O4 C4 SING N N 8 A1LXD O5 C5 SING N N 9 A1LXD C4 C5 SING N N 10 A1LXD C3 H1 SING N N 11 A1LXD C3 H2 SING N N 12 A1LXD C4 H3 SING N N 13 A1LXD C5 H4 SING N N 14 A1LXD C5 H5 SING N N 15 A1LXD O1B H6 SING N N 16 A1LXD O2 H7 SING N N 17 A1LXD O4 H8 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1LXD InChI InChI 1.06 "InChI=1S/C5H8O5/c6-3-1-5(9,4(7)8)10-2-3/h3,6,9H,1-2H2,(H,7,8)/t3-,5-/m0/s1" A1LXD InChIKey InChI 1.06 DONPUMGGARYEMQ-UCORVYFPSA-N A1LXD SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1CO[C@@](O)(C1)C(O)=O" A1LXD SMILES CACTVS 3.385 "O[CH]1CO[C](O)(C1)C(O)=O" A1LXD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H](CO[C@@]1(C(=O)O)O)O" A1LXD SMILES "OpenEye OEToolkits" 2.0.7 "C1C(COC1(C(=O)O)O)O" # _pdbx_chem_comp_identifier.comp_id A1LXD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},4~{S})-2,4-bis(oxidanyl)oxolane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1LXD "Create component" 2024-01-31 PDBJ A1LXD "Initial release" 2024-07-10 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1LXD _pdbx_chem_comp_synonyms.name "(2~{S},4~{S})-2,4-bis(oxidanyl)oxolane-2-carboxylic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #